From chemistry-request%!at!%ccl.net Thu Aug 7 10:03:34 2003 Received: from dedalus.lcc.ufmg.br (dedalus.lcc.ufmg.br [150.164.65.10]) by server.ccl.net (8.12.8/8.12.8) with ESMTP id h77E3XNG005056 for ; Thu, 7 Aug 2003 10:03:34 -0400 Received: from dedalus.lcc.ufmg.br (loopback [127.0.0.1]) by dedalus.lcc.ufmg.br (8.12.8p1/8.12.8) with ESMTP id h77DoPxl036654; Thu, 7 Aug 2003 10:50:25 -0300 Received: from localhost (amolive -x- at -x- localhost) by dedalus.lcc.ufmg.br (8.12.8p1/8.12.8/Submit) with ESMTP id h77DoOUX036652; Thu, 7 Aug 2003 10:50:24 -0300 Date: Thu, 7 Aug 2003 10:50:24 -0300 (BSC) From: andre mauricio de oliveira X-X-Sender: amolive {*at*} dedalus To: Thomas Steinbrecher cc: chemistry.-at-.ccl.net Subject: Re: CCL:Tool for secondary structure prediction In-Reply-To: Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Dear Dr. Steinbrecher, (1) Try www.expasy.org. (2) VEGA (freeware!) also has an interface w/ PREDICTOR suite. Both require sequence in FASTA format. Greets. On Thu, 7 Aug 2003, Thomas Steinbrecher wrote: > Dear CCLers, > > I am looking for a tool to predict secondary structure > elements for a protein of known sequence but without > 3D-structure. There are no homologues with known structure. > > Please point me to references for a program (ideally open > source/freeware) that can do such a thing. > > Kind Regards, > > Thomas Steinbrecher > > -= This is automatically added to each message by mailing script =- > To send e-mail to subscribers of CCL put the string CCL: on your Subject: line > and send your message to: CHEMISTRY.-at-.ccl.net > > Send your subscription/unsubscription requests to: CHEMISTRY-REQUEST.-at-.ccl.net > HOME Page: http://www.ccl.net | Jobs Page: http://www.ccl.net/jobs > > If your mail is bouncing from CCL.NET domain send it to the maintainer: > Jan Labanowski, jkl.-at-.ccl.net (read about it on CCL Home Page) > -+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ > > > > > > Andre Mauricio de Oliveira VOICE +55-031-374-1325 +55-031-499-5765 FAX +55-031-499-5700 Laboratorio de QSAR e Modelagem Molecular Nucleo de Estudos em Quimica Medicinal (NEQUIM) NEQUIM's Homepage: http://www.qui.ufmg.br/~nequim Departamento de Quimica ICEx Federal University of Minas Gerais Av Antonio Carlos 6627 Pampulha ZIP CODE 31270-901 Belo Horizonte MG Brazil