From chemistry-request#* at *#ccl.net Thu Aug  7 15:30:51 2003
Received: from mailrelay.mdli.com ([208.200.221.8])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id h77JUmNG012708
	for <chemistry_at_ccl.net>; Thu, 7 Aug 2003 15:30:51 -0400
Received: from puffin.mdli.com (puffin.mdli.com [172.16.1.12])
	by mailrelay.mdli.com (Postfix) with ESMTP
	id 693D1B5F20; Thu,  7 Aug 2003 12:30:47 -0700 (PDT)
Received: from exch-sl02.mdli.com by puffin.mdli.com (980427.SGI.8.8.8/BCH1.0)
	id MAA24777; Thu, 7 Aug 2003 12:30:45 -0700 (PDT)
Received: by exch-sl02.mdli.com with Internet Mail Service (5.5.2653.19)
	id <QDPFMMQT>; Thu, 7 Aug 2003 12:30:45 -0700
Message-ID: <FCA94FF996325842AACD9E80DBC2CA1F05033883_at_exch-sl02.mdli.com>
From: Doug Henry <D.Henry_at_mdl.com>
To: "'andre mauricio de oliveira'" <amolive_at_dedalus.lcc.ufmg.br>,
   Thomas Steinbrecher <thomas.steinbrecher_at_physchem.uni-freiburg.de>
Cc: chemistry_at_ccl.net
Subject: RE: Tool for secondary structure prediction
Date: Thu, 7 Aug 2003 12:30:43 -0700 
MIME-Version: 1.0
X-Mailer: Internet Mail Service (5.5.2653.19)
Content-Type: text/plain;
	charset="iso-8859-1"

Another is PSIPRED:
http://bioinf.cs.ucl.ac.uk/psipred/

-----Original Message-----
From: andre mauricio de oliveira [mailto:amolive_at_dedalus.lcc.ufmg.br]
Sent: Thursday, August 07, 2003 6:50 AM
To: Thomas Steinbrecher
Cc: chemistry_at_ccl.net
Subject: CCL:Tool for secondary structure prediction





Dear Dr. Steinbrecher,

(1) Try www.expasy.org.
(2) VEGA (freeware!) also has an interface w/ PREDICTOR	 suite.

Both require sequence in FASTA format.

Greets.





On Thu, 7 Aug 2003, Thomas Steinbrecher wrote:

> Dear CCLers,
>
> I am looking for a tool to predict secondary structure
> elements for a protein of known sequence but without
> 3D-structure. There are no homologues with known structure.
>
> Please point me to references for a program (ideally open
> source/freeware) that can do such a thing.
>
> Kind Regards,
>
> Thomas Steinbrecher
>
>
> Send your subscription/unsubscription requests to:
CHEMISTRY-REQUEST_at_ccl.net
> HOME Page: http://www.ccl.net   | Jobs Page: http://www.ccl.net/jobs
>
>
>
>
>
>
>

Andre Mauricio de Oliveira

VOICE +55-031-374-1325
      +55-031-499-5765
FAX   +55-031-499-5700

Laboratorio de QSAR e Modelagem Molecular
Nucleo de Estudos em Quimica Medicinal (NEQUIM)
NEQUIM's Homepage: http://www.qui.ufmg.br/~nequim
Departamento de Quimica ICEx
Federal University of Minas Gerais
Av Antonio Carlos 6627 Pampulha ZIP CODE 31270-901
Belo Horizonte MG Brazil


-= This is automatically added to each message by mailing script =-
To send e-mail to subscribers of CCL put the string CCL: on your Subject:
line
and send your message to:  CHEMISTRY_at_ccl.net

Send your subscription/unsubscription requests to: CHEMISTRY-REQUEST_at_ccl.net

HOME Page: http://www.ccl.net   | Jobs Page: http://www.ccl.net/jobs 

If your mail is bouncing from CCL.NET domain send it to the maintainer:
Jan Labanowski,  jkl_at_ccl.net (read about it on CCL Home Page)
-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+