CCL:G: openbabel question
- From: Geoffrey Hutchison <grh25+/-cornell.edu>
- Subject: CCL:G: openbabel question
- Date: Tue, 13 Dec 2005 10:46:20 -0500
Sent to CCL by: Geoffrey Hutchison [grh25-#-cornell.edu]
Yes, it is correct that in Open Babel 2.0, we have not included the
Gaussian z-matrix input format. Instead, we concentrated on two things:
* Making sure the core library is flexible and robust
* Making sure "key formats" work well
So no, not all formats from the original babel are supported in Open
Babel right now. Certainly if there seems to be a demand for gzmat,
it can be added. Since it's a volunteer project, formats are added
when people contribute them to us, or when developers like myself
have a need (e.g., I start using WizzyChem). On the other hand,
Gaussian cartesian input has been supported for ages.
Second, I also noticed that openbabel doesnt
convert Gaussian
output
anymore as babel used to do ... Is that also correct?
I use Open Babel to read Gaussian output every day. So I'm not sure
how you decided that it doesn't convert Gaussian output -- for sure I
don't have old Gaussian files so I can only test g98 and g03.
Older Gaussian files or other formats can be contributed:
http://sourceforge.net/tracker/?atid=447448&group_id=40728&func=browse
http://sourceforge.net/tracker/?atid=740158&group_id=40728&func=browse
Cheers,
-Geoff
--
-Dr. Geoffrey Hutchison <grh25/a\cornell.edu>
Cornell University, Department of Chemistry and Chemical Biology
Abruña Group http://abruna.chem.cornell.edu/
On Dec 13, 2005, at 9:39 AM, Vlad Cojocaru Vlad.Cojocaru-#-eml-
r.villa-bosch.de wrote:
Sent to CCL by: Vlad Cojocaru [Vlad.Cojocaru=eml-r.villa-bosch.de]
Dear CCL-ers,
I have been using in the past babel to create gzmat files from mol2
or pdb. However, I noticed that openbabel doesnt support the gzmat
file
format anymore ... Is that correct?
Second, I also noticed that openbabel doesnt convert Gaussian
output
anymore as babel used to do ... Is that also correct?
Although I am not using Gaussian at the moment I am just wondering
why openbabel doesnt support these file formats?
Best wishes
vlad
--
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Villa Bosch
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg
Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru.:.eml-r.villa-bosch.de
<mailto:Vlad.Cojocaru.:.eml-r.villa-bosch.de>
Additional info: my home page
<http://projects.villa-bosch.de/mcm/people/cojocaru/>