CCL:G: openbabel question
- From: Vlad Cojocaru
<Vlad.Cojocaru!A!eml-r.villa-bosch.de>
- Subject: CCL:G: openbabel question
- Date: Tue, 13 Dec 2005 18:57:14 +0100
Sent to CCL by: Vlad Cojocaru [Vlad.Cojocaru-$-eml-r.villa-bosch.de]
Dear Geoffrey,
Thanks for the answers to my questions ... I thought that the
Gaussian output is not supported because when I type babel -H into the
terminal, there is no g94, g98 or g03 input fyle type ... So, it was
more like a guess .. I didnt test it. However, if it supports those
files as input, I thought they should be listed by -H option... But,
again at the moment I am not using Gaussian so it was a rather
informative question, not based on encountered problems...
Best
vlad
Geoffrey Hutchison grh25**cornell.edu wrote:
>Sent to CCL by: Geoffrey Hutchison [grh25-#-cornell.edu]
>
>Yes, it is correct that in Open Babel 2.0, we have not included the
>Gaussian z-matrix input format. Instead, we concentrated on two things:
>* Making sure the core library is flexible and robust
>* Making sure "key formats" work well
>
>So no, not all formats from the original babel are supported in Open
>Babel right now. Certainly if there seems to be a demand for gzmat,
>it can be added. Since it's a volunteer project, formats are added
>when people contribute them to us, or when developers like myself
>have a need (e.g., I start using WizzyChem). On the other hand,
>Gaussian cartesian input has been supported for ages.
>
>
>
>> Second, I also noticed that openbabel doesnt convert Gaussian
>>output
>>anymore as babel used to do ... Is that also correct?
>>
>>
>
>I use Open Babel to read Gaussian output every day. So I'm not sure
>how you decided that it doesn't convert Gaussian output -- for sure I
>don't have old Gaussian files so I can only test g98 and g03.
>
>Older Gaussian files or other formats can be contributed:
>http://sourceforge.net/tracker/?atid=447448&group_id=40728&func=browse
>http://sourceforge.net/tracker/?atid=740158&group_id=40728&func=browse
>
>Cheers,
>-Geoff
>
>--
>-Dr. Geoffrey Hutchison <grh25/a\cornell.edu>
>Cornell University, Department of Chemistry and Chemical Biology
>Abruña Group http://abruna.chem.cornell.edu/
>
>On Dec 13, 2005, at 9:39 AM, Vlad Cojocaru Vlad.Cojocaru-#-eml-
>r.villa-bosch.de wrote:
>
>
>
>>Sent to CCL by: Vlad Cojocaru [Vlad.Cojocaru=eml-r.villa-bosch.de]
>>Dear CCL-ers,
>> I have been using in the past babel to create gzmat files from mol2
>>or pdb. However, I noticed that openbabel doesnt support the gzmat
>>file
>>format anymore ... Is that correct?
>> Second, I also noticed that openbabel doesnt convert Gaussian
>>output
>>anymore as babel used to do ... Is that also correct?
>> Although I am not using Gaussian at the moment I am just wondering
>>why openbabel doesnt support these file formats?
>>Best wishes
>>vlad
>>
>>
>>--
>>
>>
>> Dr. Vlad Cojocaru
>> EML Research gGmbH
>> Molecular and Cellular Modeling Group
>> Villa Bosch
>> Schloss-Wolfsbrunnenweg 33
>> 69118 Heidelberg
>> Germany
>> Phone: +49-6221-533266
>> Fax: +49-6221-533298
>> e-mail: Vlad.Cojocaru.:.eml-r.villa-bosch.de
>> <mailto:Vlad.Cojocaru.:.eml-r.villa-bosch.de>
>> Additional info: my home page
>> <http://projects.villa-bosch.de/mcm/people/cojocaru/>
>
>
>
>
>
--
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Villa Bosch
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg
Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru/./eml-r.villa-bosch.de
<mailto:Vlad.Cojocaru/./eml-r.villa-bosch.de>
Additional info: my home page
<http://projects.villa-bosch.de/mcm/people/cojocaru/>