Summary: correlating in silico TS energies with ee values
- From: Joe Harriman <s808o/at/unb.ca>
- Subject: Summary: correlating in silico TS energies with ee
values
- Date: Thu, 10 Jun 2004 10:43:23 -0300
Thanks for everyone for their replies. The following is a summary of the
responses
given to my initial question. In short I had asked if there were any methods
available
to correlate experimental ee values with TS energies obtained in silico. Hope
this can
help others as well.
Hi Joe,
The critical number you would need is the activation energy, i.e. the difference
between
the transition state energy and the reactants ground state energy (ideally free
energies including the entropic term). This should correlate with the energy of
activation (Ea) from the Arrhenius equation.
http://www.shodor.org/UNChem/advanced/kin/arrhenius.html
Then, you would need to test the correlation of the calculated activation
energies with
some experimentally-derived numbers to:
1) establish that the model and theory-level does reasonably reproduce your
experimentally observed results
2) to create a 'calibration' equation to more accurately estimate
activation energies for new reaction paths
If kinetically controlled, then the product ratios should be related to the
respective
reaction rates. If thermodynamically controlled, then the product energies
(energies of
reaction) should control the product ratios. This approach has been applied in a
paper
by: Malwitz, N., Reaction Kinetic Modeling from PM3 Transition State
Calculations, J.
Phys. Chem., Vol 99,
No. 15, 1995 p. 5291
Regards,
David Gallagher
CAChe Group, Fujitsu
Portland, Oregon
Hi,
This comes out of the Eyring or Arrhenius equations, which
you find in any basic physical chemistry text book. Arrhenius: k = A
exp(-Ea/RT); I
prefer Eyring, but they give the same results when you're looking at relative
rates.
As a first approximation assume that the constant(s) are equal for both paths
(usually
including the entropy, a fairly strong approximation...). I assume that you're
looking
at an irreversible step, then the ratio of products, r, can be obtained simply
as the
ratio of rate constants, r = exp(DEa/RT), where DEa is the difference in
transition
state energy (all the constants disappear in the division). When you have the
ratio,
the ee is easily obtained from ee = (r-1)/(r+1), which is the excess divided by
the
total, the definition of ee.
/Per-Ola
Joe,
The enantiomeric excess can be expressed as a ratio which means that you should
be able
to predict the ration from using the dG values at the dtationary point (TS). At
a
minimum, you need to do frequency calculations in order to obtain dG values.
You know
that one can consider that a pair of diastereomeric transition states (and they
have to
be to have different TS energies as enantiomeric TS have equivalent energies)
can be
considered to be an equilibrium reaction so K# = exp[-DG/RT]. So you can compare
TS
Equilibrium constants K#(1)/K#(2) = exp[(DG(2)-DG(1))/RT]
> From this it is easy to see how you could predict ration of optical
isomers.
I hope this helps...
Mark
Hi,
All other things equal, the energies can be treated as classical
barriers relative to the ground-state for the start of the reaction. I would
calculate
that as the end of an IRC run (or DRC with some handwaving), depending on the
program
you are using. Then use the apparent DeltaEdagger in the Arrhenius equation.
Or use
the delta(deltaEdagger) as a measure of the relative ratios of the isomers.This
should
lead (at worst) to a prediction of the predominant isomer, assuming kinetic
control of
the reaction. Delta(deltaE) (from the two ends of the IRC) can be used as a
prediction
of the predominant isomer, assuming thermodynamic control.
Sb
Hi,
First, I am not an expert in this area, and I will be very much
interested in the summary of all the answers that
you will get.
That said, I think that it depends on wether the two enantiomeric products are
obtained
under a kinetic control or under thermodynamic control. If the experimental
conditions
are such that you obtain the thermal equilibrium for your products then you
should use
their energies to calculate their proportions. (Bearing in mind that enantiomers
have
the same energy, then you should get ee=0.) Assuming that you are under kinetic
control, I would suggest using the Transition State Theory that states that the
rate
constant is proportional to exp(-Delta_G(TS)/RT). Then you can see that the
concentration of each product is proportionnal to k and thus to this exponential
term :
[A]/[B]=exp(-(Delta_G(TS-A)-Delta_G(TS-B))/RT) If you think that the entropic
contribution is the same for both TS, you can write:
[A]/[B]=exp(-(Delta_E(TS-A)-Delta_E(TS-B))/RT)
hope this helps,
Paul.
Joe,
Please take a look at the following publication from Ken Houk's group.
I did the calculations for stereoselective hydroborating agents - mono
and
di-isopinanylcampheylboranes. We used a hybrid QM/MM method at that time due to
the
difficulty of using a complete QM approach for the system. If you read the paper
and
references carefully, you should see some formulas showing how to convert
relative
energies into enantiomeric excess values.
There is also an earlier publication (of which I am a co-author) -
should be
Tetrahedron, or something similar listed in the Science paper. Sorry, I do not
a copy
of the paper with me at the moment.
Contact me or Ken Houk (UCLA) if you have further questions.
Regards,
Jim Metz