Subject: difficulty in using Babel

From: "97104 Chinmoy Ranjan UG(CHM)." <[email-masked]>
Date: Fri, 16 Mar 2001 09:47:53 +0530 (IST)

Hello All,
Its to Babel users.
 I was try to convert a pdb file to mol2 format using babel but while
doing the calculation i get the following message:
.
.
.
.

atom 8188 is isolated, type=O
atom 8189 is isolated, type=O
Unable to assign HYB type to atom 1333 type = N
Unable to assign HYB type to atom 1334 type = N
Unable to assign HYB type to atom 2344 type = N
Unable to assign HYB type to atom 3638 type = Mo
Unable to assign HYB type to atom 7294 type = Mo

The protein molecule(sulphite oxidase) contains Mo at its active site.I
donot understand how to get around this problem.Any kind of suggesstion is
is appreciated.

Thanks in advance.
Chinmoy Ranjan 
                        CHINMOY RANJAN                                          
                      INDIAN INSTITUTE OF TECHNOLOGY 
                        KANPUR