Subject: Re: CCL:installing autodock tools

From: [email-masked]
Date: Sat, 12 May 2001 16:22:26 -0500

Hi, I got the same problem before. Try to add the path
of Pmv to the .bash_profile. It may work. I did as
following:

PATH=$PATH: /home/she
lver/Program/python1.5/i86Linux2/bin:/home/shelver/Program/python1.5/share/lib/p
ython1.5/site-packages/AutoDockTools:/home/shelver/Program/python1.5/share/lib/p
ython1.5/site-packages/Pmv 

Unfornately I still have installed the ADT program
properly. The problem is about the OpenGL. I was told to
install the openGL1.5, but I do not know where to
download the openGL1.5 for Linux. If you know or someone
else know that, please let me know.
The following is the error I got while i try to run pmv
or adt:
Run PMV from 
/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/Pmv
Traceback (innermost last):
  File
"/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/Pmv/pmv",
line 53, in ?
    from Pmv.moleculeViewer import MoleculeViewer
  File
"/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/Pmv/moleculeViewer.py",
line 15, in ?
    from MolKit.protein import Protein
  File
"/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/MolKit/protein.py",
line 401, in ?
    from Pmv.extruder import Rectangle2D, Sheet2D,
Extrude, Rectangle2DDup, Circle2D
  File
"/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/Pmv/extruder.py",
line 16, in ?
    from OpenGL import GL
  File
"/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/OpenGL/GL/__init__.py",
line 4, in ?
    from _opengl_num import *
ImportError:
/home/shelver/Program/python1.5/share/lib/python1.5/site-packages/OpenGL/shared/linux2/_opengl_nummodule.so:
undefined symbol: glPolygonOffsetEXT
hit enter to continue       

hopefully someone give me a help.

xin
dept of pharmacy
NDSU
Fargo, ND 58102

Quoting Benjamin J Gross <[email-masked]>:

> Hi everyone,
> Sorry if my question is trivial:  I'm a
linux/python/autodock newbie.  I'm
> having some trouble getting autodock tools or Pmv to
work.  When I try to
> run the pmv script I get the following error:
> 
> [bgross@bgross Pmv]$ pmv
> Traceback (innermost last):
>   File
"/home/bgross/tools/share/lib/python1.5/site-packages/Pmv/pmv",
line
> 49, in ?
>     import Pmv
> ImportError: No module named Pmv
> 
> Has anyone solved anything similar?
> 
> Thanks in advance.  
> 
> Ben
> 
> 
> 
> 
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