Subject: Autodock 3.05 Problems

From: F Schambach <[email-masked]>
Date: Thu, 28 Jun 2001 18:00:48 +0100 (BST)

I've been trying to get Autodock distribution 3.05 to work on either 
a Red Hat Linux machine and on a SGI running IRIX 6.3 .

The problem I have when I try to dock into my protein structure is
that Autodock always docks my small ligand on top of protein residues
in positions that are obviously impossible.

That occurs on both systems with all kinds of ligands,
with the precompiled binaries, with the ones I compiled myself,
with standard mkgpf3/mkdpf3 files, 
who can help ?

Should I use an older/newer version ?

Thank you very much,

Felix Schambach, University of Bristol, Dept of Biochemistry

[email-masked]