Subject: Re: CCL:A program to measure solvent accessibility/calculate connolly surface?

From: Minghu Song <[email-masked]>
Date: Thu, 28 Jun 2001 09:54:58 -0400 (EDT)

I used " Naccess", which can calculate the SASA and %SASA by residues or
atoms:
http://wolf.bms.umist.ac.uk/naccess/
and Deepview" (http://www.expasy.ch/)(you have to write a script to
extract the selected residues)

you  can also  try  "whatif",
"do_dssp"(http://rugmd0.chem.rug.nl/~gmx/online2.0/do_dssp.html),
MSMS"(http://www.scripps.edu/pub/olson-web/people/sanner/html/msms_home.html  
"ASC" (http://mendel.imp.univie.ac.at/SURFACE/ASC/index.html)

cheers,
minghu

On Wed, 27 Jun 2001, Andrew Hoofnagle wrote:

> Greetings-
> 
> Does anyone know of freeware or code to calculate a connolly surface for a
> macromolecule?  I am also interested in calculating the solvent
> accessibility of residues and atoms in the molecule, if anyone has any
> information regarding this as well.
> 
> Thank for any help,
> 
> Andy Hoofnagle
> 
> 
> 
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