Subject: helix bending in MD simulation

From: llshen <[email-masked]>
Date: Fri, 16 Nov 2001 8:40:44 +0800

Dear CCLers:
There is helix bending (unfloding on two residues) happened on the protein I simulated. Different structure prediction methods show that the helix is robust and conserved. Is there any person met same problems? And is there any simulation skills/analysis tools to find out the mechanical reason of the bending? BTW, I used paralleled EGO for MD simulation .

THX!

Lingling Shen