From chemistry-request@server.ccl.net Wed Mar 13 06:44:25 2002
Received: from mr4.cc.ic.ac.uk ([155.198.5.114])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DBiPp29874
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 06:44:25 -0500
Received: from origin.ch.ic.ac.uk ([155.198.224.252] helo=chcmga.ch.ic.ac.uk)
	by mr4.cc.ic.ac.uk with esmtp (Exim 3.31 #1)
	id 16l7BB-0001sF-04
	for chemistry@ccl.net; Wed, 13 Mar 2002 11:44:25 +0000
Received: from hbtower.ch.ic.ac.uk ([155.198.226.132] helo=ic.ac.uk)
	by chcmga.ch.ic.ac.uk with esmtp (Exim 2.02 #1)
	id 16l7Bf-009P1p-00; Wed, 13 Mar 2002 11:44:55 +0000
Sender: krzys@ic.ac.uk
Message-ID: <3C8F3B4B.BD651FDC@ic.ac.uk>
Date: Wed, 13 Mar 2002 11:43:08 +0000
From: Krzysztof Radacki <K.Radacki@ic.ac.uk>
Organization: Imperial College, London
X-Mailer: Mozilla 4.78 [en] (X11; U; Linux 2.4.7-10smp i686)
X-Accept-Language: en
MIME-Version: 1.0
To: CCL <chemistry@ccl.net>
Subject: small linux/c++ question.
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit

Dear CCL'ers
I have a little bit out of topic question.
Currently I'm translating my program from Borland C++ 
to gcc and I can't find a function itoa in gcc (it 
converts integer to string).
I would be quite happy if someone could explaine me how 
to do it in gcc.

MfG
Krzysztof

p.s.
because it's realy out-of-topic maybe better if answer 
would be addressed directly to my e-mail not to ccl.


-- 
Dr. K.Radacki
Department of Chemistry
Catalysis and Advanced Materials Section
Imperial College, London

From chemistry-request@server.ccl.net Wed Mar 13 07:37:25 2002
Received: from smtp1.dti.ne.jp ([202.216.228.36])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DCbOp30879
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 07:37:25 -0500
Received: from b159504364 (PPP387.fukuoka-ip.dti.ne.jp [211.132.93.137]) by smtp1.dti.ne.jp (8.12.1/3.7W) with SMTP id g2DCbN12005630 for <chemistry@ccl.net>; Wed, 13 Mar 2002 21:37:23 +0900 (JST)
Message-ID: <001801c1ca8a$9fab8440$895d84d3@b159504364>
From: "Telkuni" <telkuni@venus.dti.ne.jp>
To: <chemistry@ccl.net>
Subject: Role of the Fourier Transform in TDDFT
Date: Wed, 13 Mar 2002 21:28:46 +0900
MIME-Version: 1.0
Content-Type: text/plain;
	charset="iso-2022-jp"
Content-Transfer-Encoding: 7bit
X-Priority: 3
X-MSMail-Priority: Normal
X-Mailer: Microsoft Outlook Express 5.50.4133.2400
X-MimeOLE: Produced By Microsoft MimeOLE V5.50.4133.2400

  Hello! CCLers,

 I'm learning TDDFT. I have one question which is the role of its Fourier
transform.  All responses, I will appreciate. And I will summarize the replies,
send it to CCL.


  I have read some papers:

  1 )M. Petersilka
$B!!(BExcitation Energies from Time-Dpendent Density-Functional Theory
$B!!(BPhys. Rev. Lett. 76, p1212 (1996)

  2) M E Casida
  Time-Dependent Density Functional Response Theory for Molecules
$B!!(B-RECENT ADVANCES IN DENSITYFUNCTIONAL METHODS (Part I)

and so on...

  Although the Fourier transform was used on these papers, I can't find 
the reason(s) why we must do Fourier transform in TDDFT.


  On "Density-functional approach to local-field effects in finite systems: 
Photoabsorption in the rare gases"(by A.Zangwill and P.Soven, 
Phys. Rev. A, vol.21, pp1561 (1980)), there is a description:
  "The induced density and external potential are related through a position-
    and frequency-dependent complex susceptibility".
  Maybe, I think it is necessary to know the perturbation frequency by converting
the time-domain with Fourier transform ( time -> omega, to calculate the energy 
with the frequency).

  But I'm wondering, can we get perturbation frequency "only with" the Fourier 
transform? Because the transform has been originally used to divide or analyze 
complex wave(s).

  If someone knows the necessity and reason(s) of the Fourier transform 
in TDDFT, or knows the articles which describe the role of transform, please 
teach me.

     
   Best regards,
   Telkuni


-------------------------------------------------
   Telkuni Tsuru     telkuni@venus.dti.ne.jp




From chemistry-request@server.ccl.net Wed Mar 13 01:20:17 2002
Received: from web13705.mail.yahoo.com ([216.136.175.138])
	by server.ccl.net (8.11.6/8.11.0) with SMTP id g2D6KHp22045
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 01:20:17 -0500
Message-ID: <20020313061846.28706.qmail@web13705.mail.yahoo.com>
Received: from [213.176.106.3] by web13705.mail.yahoo.com via HTTP; Tue, 12 Mar 2002 22:18:46 PST
Date: Tue, 12 Mar 2002 22:18:46 -0800 (PST)
From: reza tayebee <rtayebee@yahoo.com>
Subject: a request
To: chemistry@ccl.net
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii

Dear Sir
I am a chemist in Iran. I would be appreciate if you
send me papers on the application of Fuzzy Logic in
organic and inorganic chemistry by E-mail.
Yours Sincerely
Reza Tayebee

__________________________________________________
Do You Yahoo!?
Try FREE Yahoo! Mail - the world's greatest free email!
http://mail.yahoo.com/


From chemistry-request@server.ccl.net Wed Mar 13 09:53:57 2002
Received: from dh094-210.csb.sunysb.edu ([129.49.94.210])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DErvp02474
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 09:53:57 -0500
Received: from localhost (cuigl@localhost)
	by dh094-210.csb.sunysb.edu (8.11.6/8.11.6) with ESMTP id g2DEsZZ16510;
	Wed, 13 Mar 2002 09:54:35 -0500
X-Authentication-Warning: dh094-210.csb.sunysb.edu: cuigl owned process doing -bs
Date: Wed, 13 Mar 2002 09:54:35 -0500 (EST)
From: "CUI, Guanglei" <cuigl@morita.chem.sunysb.edu>
X-X-Sender: cuigl@dh094-210.csb.sunysb.edu
To: Krzysztof Radacki <K.Radacki@ic.ac.uk>
cc: CCL <chemistry@ccl.net>
Subject: Re: CCL:small linux/c++ question.
In-Reply-To: <3C8F3B4B.BD651FDC@ic.ac.uk>
Message-ID: <Pine.LNX.4.44.0203130954140.16083-100000@dh094-210.csb.sunysb.edu>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII

You can use sprintf. 

On Wed, 13 Mar 2002, Krzysztof Radacki wrote:

> Dear CCL'ers
> I have a little bit out of topic question.
> Currently I'm translating my program from Borland C++ 
> to gcc and I can't find a function itoa in gcc (it 
> converts integer to string).
> I would be quite happy if someone could explaine me how 
> to do it in gcc.
> 
> MfG
> Krzysztof
> 
> p.s.
> because it's realy out-of-topic maybe better if answer 
> would be addressed directly to my e-mail not to ccl.
> 
> 
> 

-- 
Guanglei Cui
Dept. of Chemistry
SUNY at Stony Brook
Stony Brook, NY 11790


From chemistry-request@server.ccl.net Wed Mar 13 09:51:40 2002
Received: from ucidoor.unitedcatalysts.com ([208.23.162.2])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DEpep02426
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 09:51:40 -0500
Received: by ucidoor.unitedcatalysts.com; (8.8.8/1.3/10May95) id JAA15920; Wed, 13 Mar 2002 09:51:35 -0500 (EST)
Received: from 10.1.0.50 by ucismtp02.unitedcatalysts.com (InterScan E-Mail VirusWall NT); Wed, 13 Mar 2002 09:49:13 -0500 (Eastern Standard Time)
Received: from lvlxch01.unitedcatalysts.com ([10.16.100.88])
 by lvlmail.unitedcatalysts.com (PMDF V6.0-24 #41777)
 with ESMTP id <0GSX00GDS2CKIB@lvlmail.unitedcatalysts.com>; Wed,
 13 Mar 2002 09:45:56 -0500 (EST)
Received: by lvlxch01.unitedcatalysts.com with Internet Mail Service
 (5.5.2650.21)	id <D3WP86ZK>; Wed, 13 Mar 2002 09:49:51 -0500
Content-return: allowed
Date: Wed, 13 Mar 2002 09:49:51 -0500
From: "Shobe, Dave" <dshobe@sud-chemieinc.com>
Subject: RE: Pseudopotential+AIM
To: =?iso-8859-1?Q?=27Miguel_A=2E_Ram=EDrez=27?= <mramirez@ull.es>,
   chemistry@ccl.net
Message-id: 
 <157A51F55AAAD3119CD70008C7B1629D01C15AAD@lvlxch01.unitedcatalysts.com>
MIME-version: 1.0
X-Mailer: Internet Mail Service (5.5.2650.21)
Content-type: text/plain; charset=iso-8859-1
Content-Transfer-Encoding: 8bit
X-MIME-Autoconverted: from quoted-printable to 8bit by server.ccl.net id g2DEpep02427

In principle you can but you have to add back in the "missing" electrons
before proceeding with the analysis.
 
--David Shobe
Süd-Chemie Inc.
phone (502) 634-7409
fax     (502) 634-7724
email  dshobe@sud-chemieinc.com

Don't bother flaming me: I'm behind a firewall.



-----Original Message-----
From: Miguel A. Ramírez [mailto:mramirez@ull.es]
Sent: Tuesday, March 12, 2002 6:04 AM
To: chemistry@ccl.net
Subject: CCL:Pseudopotential+AIM



Please, I'm working with structures containing Co-Co bonds. I'm using
LANL2DZ as pseudopotential for the core electrons of the cobalt, In thats
conditions, could I use AIM methodology to analyse the molecule?. Thank you.
 
 
Dr. Miguel A. Ramírez Muñoz
Instituto Universitario de Bio-Orgánica "Antonio González"
Universidad de La Laguna
Astrofísico Frco. Sánchez, nº 2
38206, La Laguna, Tenerife, Spain



From chemistry-request@server.ccl.net Wed Mar 13 10:32:55 2002
Received: from rwcrmhc52.attbi.com ([216.148.227.88])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DFWtp03547
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 10:32:55 -0500
Received: from C1353359A ([12.228.114.158]) by rwcrmhc52.attbi.com
          (InterMail vM.4.01.03.27 201-229-121-127-20010626) with SMTP
          id <20020313153250.EWHT1147.rwcrmhc52.attbi.com@C1353359A>;
          Wed, 13 Mar 2002 15:32:50 +0000
Reply-To: <mark@planaria-software.com>
From: "Mark Thompson" <mark@planaria-software.com>
To: "Krzysztof Radacki" <K.Radacki@ic.ac.uk>, "CCL" <chemistry@ccl.net>
Subject: RE: small linux/c++ question.
Date: Wed, 13 Mar 2002 07:32:05 -0800
Message-ID: <000701c1caa4$3ae3a7d0$0300a8c0@attbi.com>
MIME-Version: 1.0
Content-Type: text/plain;
	charset="us-ascii"
Content-Transfer-Encoding: 7bit
X-Priority: 3 (Normal)
X-MSMail-Priority: Normal
X-Mailer: Microsoft Outlook IMO, Build 9.0.2416 (9.0.2911.0)
In-Reply-To: <3C8F3B4B.BD651FDC@ic.ac.uk>
X-MimeOLE: Produced By Microsoft MimeOLE V5.50.4807.1700
Importance: Normal


Dear Krzysztof,

I've appended an implementation that I've used in the past.  It creates the
string in inverted order and reverses it at the end.  All the usual caveats
about making sure the argument s[] is big enough apply...

Mark

=================================
Mark Thompson, Ph.D.
Planaria Software
Seattle, WA.
http://www.arguslab.com
=================================


void Itoa (int n, char s[])
{
  int   i, j, c, sign;

  if ((sign = n) < 0) {n = -n;}

  i = 0;

  do
  {
    s[i++] = (n % 10) + '0';
  } while ((n /= 10) > 0);


  if (sign < 0) {s[i++] = '-';}

  s[i] = '\0';

  for (i = 0, j = strlen(s) - 1;  i < j; i++, j--)
  {
    c    = s[i];
    s[i] = s[j];
    s[j] = c;
  }
}


> -----Original Message-----
> From: Computational Chemistry List [mailto:chemistry-request@ccl.net]On
> Behalf Of Krzysztof Radacki
> Sent: Wednesday, March 13, 2002 3:43 AM
> To: CCL
> Subject: CCL:small linux/c++ question.
>
>
> Dear CCL'ers
> I have a little bit out of topic question.
> Currently I'm translating my program from Borland C++
> to gcc and I can't find a function itoa in gcc (it
> converts integer to string).
> I would be quite happy if someone could explaine me how
> to do it in gcc.
>
> MfG
> Krzysztof
>
> p.s.
> because it's realy out-of-topic maybe better if answer
> would be addressed directly to my e-mail not to ccl.
>
>
> --
> Dr. K.Radacki
> Department of Chemistry
> Catalysis and Advanced Materials Section
> Imperial College, London
>
> -= This is automatically added to each message by mailing script =-
> CHEMISTRY@ccl.net -- To Everybody  | CHEMISTRY-REQUEST@ccl.net --
> To Admins
> MAILSERV@ccl.net -- HELP CHEMISTRY or HELP SEARCH
> CHEMISTRY-SEARCH@ccl.net -- archive search    |    Gopher:
> gopher.ccl.net 70
> Ftp: ftp.ccl.net  |  WWW: http://www.ccl.net/chemistry/   | Jan:
> jkl@ccl.net
>
>
>
>
>
>


From chemistry-request@server.ccl.net Wed Mar 13 10:43:38 2002
Received: from lark.cc.ku.edu (root@[129.237.34.2])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DFhcp03959
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 10:43:38 -0500
Received: from MGM01 by lark.cc.ku.edu (8.8.8/1.1.8.2/12Jan95-0207PM)
	id JAA0000026334; Wed, 13 Mar 2002 09:43:34 -0600 (CST)
From: "Gerry Lushington" <glushington@ku.edu>
To: <chemistry@ccl.net>
Subject: 3D to 2D coordinate compression
Date: Wed, 13 Mar 2002 09:45:53 -0600
Message-ID: <ALENILEMDANFJFIADDDOKEIKCGAA.glushington@ku.edu>
MIME-Version: 1.0
Content-Type: text/plain;
	charset="iso-8859-1"
Content-Transfer-Encoding: 7bit
X-Priority: 3 (Normal)
X-MSMail-Priority: Normal
X-Mailer: Microsoft Outlook IMO, Build 9.0.2416 (9.0.2911.0)
Importance: Normal
X-MimeOLE: Produced By Microsoft MimeOLE V5.50.4807.1700

Hi all,

At the risk of sounding retrograde, does anyone know of a good (preferably
simple, UNIX based) program to project 3D coordinates down to reasonable
looking 2D structures?  Obviously a trivial suggestion could be to
arbitrarily wipe out one axis, but as you can imagine that can produce some
pretty awful looking tangles.

                                      - Gerry


Gerald Lushington, Director
Molecular Graphics and Modeling Laboratory
& Cty Asst Professor of Medicinal Chemistry
University of Kansas
1251 Wescoe Hall Rd.
Lawrence KS 66045-7582
------------------------------------------
3021 Malott Hall          Ph. 785-864-1140
glushington@ku.edu        Fax 785-864-5326
http://www.msg.ukans.edu/~msg/mgm.html


From chemistry-request@server.ccl.net Wed Mar 13 12:27:32 2002
Received: from kafka.net.nih.gov ([165.112.130.10])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DHRWp06617
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 12:27:32 -0500
Received: from I.T.S.ME ([129.43.27.170])
	by kafka.net.nih.gov (/8.10.1) with ESMTP id g2DHRVQ15476;
	Wed, 13 Mar 2002 12:27:31 -0500 (EST)
Date: Wed, 13 Mar 2002 12:24:00 -0500 (Eastern Standard Time)
From: "M. Nicklaus" <mn1@helix.nih.gov>
To: Gerry Lushington <glushington@ku.edu>
cc: chemistry@ccl.net, mn1@helix.nih.gov
Subject: Re: CCL:3D to 2D coordinate compression
In-Reply-To: <ALENILEMDANFJFIADDDOKEIKCGAA.glushington@ku.edu>
Message-ID: <Pine.WNT.4.21.0203131220440.-8151103-100000@lmchcaddpc1.nci.nih.gov>
X-X-Sender: mn1@helix.nih.gov
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII

On Wed, 13 Mar 2002, Gerry Lushington wrote:

> At the risk of sounding retrograde, does anyone know of a good (preferably
> simple, UNIX based) program to project 3D coordinates down to reasonable
> looking 2D structures?  Obviously a trivial suggestion could be to
> arbitrarily wipe out one axis, but as you can imagine that can produce some
> pretty awful looking tangles.


CACTVS (see http://www2.chemie.uni-erlangen.de/software/cactvs/) does a
very good job at this.  You can either use the graphical Structure Browser
(csbr), or write a simple script.

Marc

------------------------------------------------------------------------
 Marc C. Nicklaus, Ph.D.                 NIH/NCI at Frederick
 E-mail: mn1@helix.nih.gov               Bldg 376, Rm 207
 Phone:  (301) 846-5903                  376 Boyles Street
 Fax:    (301) 846-6033                  FREDERICK, MD 21702      USA
          Head, Computer-Aided Drug Design MiniCore Facility
     Laboratory of Medicinal Chemistry, Center for Cancer Research,
 National Cancer Institute at Frederick, National Institutes of Health
       http://rex.nci.nih.gov/RESEARCH/basic/medchem/mcnbio.htm
------------------------------------------------------------------------


From chemistry-request@server.ccl.net Wed Mar 13 12:45:51 2002
Received: from addu.axelero.hu ([195.228.240.77])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DHjop07074
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 12:45:51 -0500
Received: from chemaxon.com (user164.obuda.axelero.hu [195.228.88.164])
 by mail02.axelero.hu (iPlanet Messaging Server 5.1 (built Jan 30 2002))
 with ESMTP id <0GSX00JGGAOD61@mail02.axelero.hu> for chemistry@ccl.net; Wed,
 13 Mar 2002 18:45:49 +0100 (MET)
Date: Wed, 13 Mar 2002 18:45:41 +0100
From: Ferenc Csizmadia <fcsiz@chemaxon.com>
Subject: Re: CCL:3D to 2D coordinate compression
To: Gerry Lushington <glushington@ku.edu>
Cc: chemistry@ccl.net
Message-id: <3C8F9045.3030009@chemaxon.com>
Organization: ChemAxon
MIME-version: 1.0
Content-type: text/plain; charset=us-ascii; format=flowed
Content-transfer-encoding: 7BIT
X-Accept-Language: en-us, hu
User-Agent: Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:0.9.4)
 Gecko/20011128 Netscape6/6.2.1
References: <ALENILEMDANFJFIADDDOKEIKCGAA.glushington@ku.edu>

Hi Gerry,
Gerry Lushington wrote:

>At the risk of sounding retrograde, does anyone know of a good (preferably
>simple, UNIX based) program to project 3D coordinates down to reasonable
>looking 2D structures?  Obviously a trivial suggestion could be to
>arbitrarily wipe out one axis, but as you can imagine that can produce some
>pretty awful looking tangles.
>
Check out the MolConverter module in Marvin Beans. 
(http://www.chemaxon.com/products.html) 
This is the documenation: http://www.chemaxon.com/marvin/doc/molconvert.html
For example, you will need to call it like this to generate a 2D (MDL) 
Molfile:

    molconvert -2:O1 mol your_input_file > your_output_file

It is in Java, so you can run it in Unix (or Windows or Mac)

Best regards,
Ferenc

-- 
Dr. Ferenc Csizmadia
ChemAxon Ltd.
http://www.chemaxon.com




From chemistry-request@server.ccl.net Wed Mar 13 12:22:50 2002
Received: from fecit-gate.fecit.co.uk ([193.119.134.250])
	by server.ccl.net (8.11.6/8.11.0) with SMTP id g2DHMop06528
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 12:22:50 -0500
Received: by fecit-gate.fecit.co.uk; id RAA06280; Wed, 13 Mar 2002 17:36:43 GMT
Received: from suisei(192.168.101.50) by fecit-gate.fecit.co.uk via smap (V5.0)
	id xma006278; Wed, 13 Mar 02 17:36:39 GMT
Received: from calvin.fecit.co.uk (calvin.fecit.co.uk [192.168.101.124]) by suisei.fecit.co.uk (8.6.9/8.6.9) with ESMTP id QAA03281 for <chemistry@ccl.net>; Wed, 13 Mar 2002 16:50:50 GMT
Date: Wed, 13 Mar 2002 17:22:18 +0000 (GMT)
From: Andrew Horsfield <horsfield@fecit.co.uk>
X-X-Sender: hfield@calvin.fecit.co.uk
To: Computational Chemistry List <chemistry@ccl.net>
Subject: Electrostatic solvation model
Message-ID: <Pine.LNX.4.44.0203131718570.10716-100000@calvin.fecit.co.uk>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII

Hi,

Can anyone point me to a proof of the following equation for the 
electrostatic contribution to the solvation energy:

  U = 1/2 \sum_{ij} Q_i q_j / r_{ij}

where Q_i is a charge on the solute, and q_j is an induced charge on the 
solute/solvent interface.

Cheers,

Andrew

  +----------------------------------------------------+
   Andrew Horsfield       e-mail: horsfield@fecit.co.uk 
    FECIT, Hayes Park Central, Hayes End Road, Hayes,
           Middlesex UB4 8FE, United Kingdom.           
   phone: +44-(0)20-8606-4653  FAX: +44-(0)20-8606-4422 
  +----------------------------------------------------+



From chemistry-request@server.ccl.net Wed Mar 13 12:03:30 2002
Received: from simulux.us.es (IDENT:root@[150.214.145.66])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DH3Tp06025
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 12:03:29 -0500
Received: from localhost (espa2002@localhost)
	by simulux.us.es (8.9.3/8.8.7) with ESMTP id SAA07649
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 18:03:13 +0100
Date: Wed, 13 Mar 2002 18:03:13 +0100 (CET)
From: ESPA2002 <espa2002@simulux.us.es>
To: <chemistry@ccl.net>
Subject: ESPA2002. First Circular
Message-ID: <Pine.LNX.4.30.0203131802280.7600-100000@simulux.us.es>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=ISO-8859-1
Content-Transfer-Encoding: 8BIT

************************************************************************
        FIRST CIRCULAR OF THE INTERNATIONAL CONFERENCE
"ELECTRONIC STRUCTURE: PRINCIPLES AND APPLICATIONS" (ESPA-2002)
************************************************************************

       	You are cordially invited to participate in the International
Conference "Electronic Structure: Principles and Applications" that will be
held at the University of Sevilla from 11th to 13th September, 2002.

	This conference intends to bring together scientists from within the
field of Theoretical and Computational Chemistry and related fields in
Chemical Physics, Inorganic and Organic Chemistry, and Biochemistry.
This conference aims to follow in the footsteps of the two
previous meetings ("Workshop on Computational Chemistry" at Madrid (1998) and
" Electronic Structure: Prediction and Applications" at San Sebastian (2000)).
They were a stimulating forum for the interaction among groups of the Spanish
theoretical community, and for the scientific exchange of this community with
well-known foreing scientists in the field. This success compels us to organize
ESPA-2002 in the hope of consolidating these fruitful scientific activities.
It is also expected that this meeting opens the door to scientists from
other countries. The official language will be english.

         Detailed information about the  Conference can be found at the web
site:
	        http://www.quimfis.us.es/~espa2002.

      For any additional information, the following e-mail address is supplied:
                   espa2002@simulux.us.es

CONFERENCE SITE
	The Conference will be held at the Faculty of Chemistry of the
University of Sevilla (Avenida de Reina Mercedes s/n). This is located within
Sevilla, so that all kind of services are provided in the environment of the
Conference site. General information about the location, weather,
transportation and tourism is given at the web site.

SCIENTIFIC PROGRAM
        This congress will cover different topics
within the field of Theoretical and Computational Chemistry:
	- Electronic Structure
	- Quantum and Classical Simulations
	- Spectroscopy
	- Solid State: Cluster and Periodic Calculations
	- Chemical Dynamics
	- Chemistry and Physics of Surfaces
	- Biological Applications
	- Solvation Phenomena
	- Gas Phase Chemistry
	The scientific program will consist of invited lectures
and poster sessions. The following speakers have confirmed their
participation:

- J. Bertran (UAB, Spain)
- M. Dupuis (PNL-Richland, USA)
- M. J. Gillan (London, UK)
- A. Gonzalez-Lafont (UAB, Spain)
- N. M. Harrison (London, UK)
- R. M. Lambert (Cambridge, UK)
- J.P. Malrieu (Toulouse, France)
- A. Martin Pendas (Oviedo, Spain)
- D. Marx (Bochum, Germany)
- K. V. Mikkelsen (Copenhagen, Denmark)
- S. Olivella (CSIC-Barcelona, Spain)
- P. Ordejon (ICM-Barcelona, Spain)
- G. Pacchioni (Milan, Italy)
- K. Refson (RAL, UK)
- N. Roesch (Munich, Germany)
- P. Sautet (Lyon, France)
- L. Serrano Andres (Valencia, Spain)
- O. Tapia (Uppsala, Sweden)
- D. G. Truhlar (Minnessota, USA)
- S. Vazquez (Santiago, Spain)

Poster sessions will be held on Wednesday and Thursday evening.
Instructions are available at the web site. Deadline for abstract
submission is June 30, 2002.

REGISTRATION AND ACCOMMODATION

The inscription fee has been set to 210 euros. A reduced registration (150
euros) is offered to graduate students. Deadline for standard registration
fees will be June 15.
A limited number of grants will be provided to younger scientists to
partially cover the congress assistance. Applications to these grants must
be submitted before May 15 to the Organising Committee. Further details
can be found at the web site.
Registration and accomodation forms can be obtained from the web site, and
must be sent or faxed to
                          Viajes Iberia Congresos
                          c/Tetuan 24
                          41001 Sevilla (Spain)
                          Phone: 34 95 422 4095
                          Fax:   34 95 421 0215
                          e-mail: congresos.sevilla@viajesiberia.com

Information on different accommodation possibilities are detailed at the web
site.

MEALS

Lunches are included in the registration fee and will be served at the Colegio
Mayor Hernando Colon that is placed at 2 minutes walk from the Conference site.

SOCIAL PROGRAM

Welcome cocktail will take place at the gardens of the
Colegio Mayor Hernando Colon on Tuesday 10 at 20:00.
On Wednesday 11 a guided visit by night to the Alcazar (a fortified arab palace
dated in 913, which later became the residence of various arab and catholic
monarchs) is offered to the participants.
On Thursday 12 a guided visit to Italica at the sunset (the Roman city founded
by Scipio 2200 years ago where Trajan and Hadrain emperors were born) will be
organized.
On Friday 13, the congress dinner will take place during a night cruise on
the Guadalquivir river.


The Organising Commitee

Enrique Sánchez Marcos
Javier Fernández Sanz
Antonio Marquez Cruz
Rafael Rodriguez Pappalardo
Jose Manuel Martinez Fernandez
Carmen Jimenez Calzado

Departamento de Quimica Fisica.
Universidad de Sevilla




-- 
International Conference "Electronic Structure: Principles & Applications 2002"
September 11-13, Sevilla (SPAIN)
e-mail:espa2002@simulux.us.es



From chemistry-request@server.ccl.net Wed Mar 13 15:10:08 2002
Received: from donkeykong.gpcc.itd.umich.edu (smtp@[141.211.2.163])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DKA8p09520
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 15:10:08 -0500
Received: from amidar.gpcc.itd.umich.edu (amidar.gpcc.itd.umich.edu [141.211.2.209])
        by donkeykong.gpcc.itd.umich.edu (8.8.8/4.3-mailhub) with ESMTP id PAA26781; Wed, 13 Mar 2002 15:10:02 -0500 (EST)
Received: from localhost (manojp@localhost)
	by amidar.gpcc.itd.umich.edu (8.9.1a/5.1-client) with ESMTP id PAA02456; Wed, 13 Mar 2002 15:10:02 -0500 (EST)
Precedence: first-class
Date: Wed, 13 Mar 2002 15:10:02 -0500 (EST)
From: Manoj Pal <manojp@umich.edu>
X-X-Sender:  <manojp@amidar.gpcc.itd.umich.edu>
To: Krzysztof Radacki <K.Radacki@ic.ac.uk>
cc: CCL <chemistry@ccl.net>
Subject: Re: CCL:small linux/c++ question.
In-Reply-To: <000701c1caa4$3ae3a7d0$0300a8c0@attbi.com>
Message-ID: <Pine.SOL.4.33.0203131435110.21785-100000@amidar.gpcc.itd.umich.edu>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII

Hi Krzysztof,

You can do it with a couple of lines of code in C/C++:

----------------------------------------------------------
 char string_after_conversion[10000]; //make it big
 int int_to_convert;

 //read an int in int_to_convert

 sprintf(string_after_conversion, "%d", int_to_convert);
----------------------------------------------------------

 printf("%s\n",string_after_conversion); //verify...


bye,
.====================================================================.
|                                |                                   |
|  Manoj Pal                     |   Even a stopped clock tells      |
|  Graduate Student              |   the right time twice a day      |
|  Department of Chemistry       |                                   |
|  University of Michigan        |                                   |
|  Ann Arbor, Michigan           |   http://www.manojpal.cjb.net     |
|  USA                           |   Email: pal_m@mailcity.com       |
|                                |                                   |
'===================================================================='


On Wed, 13 Mar 2002, Mark Thompson wrote:

>
> Dear Krzysztof,
>
> I've appended an implementation that I've used in the past.  It creates the
> string in inverted order and reverses it at the end.  All the usual caveats
> about making sure the argument s[] is big enough apply...
>
> Mark
>
> =================================
> Mark Thompson, Ph.D.
> Planaria Software
> Seattle, WA.
> http://www.arguslab.com
> =================================
>
>
> void Itoa (int n, char s[])
> {
>   int   i, j, c, sign;
>
>   if ((sign = n) < 0) {n = -n;}
>
>   i = 0;
>
>   do
>   {
>     s[i++] = (n % 10) + '0';
>   } while ((n /= 10) > 0);
>
>
>   if (sign < 0) {s[i++] = '-';}
>
>   s[i] = '\0';
>
>   for (i = 0, j = strlen(s) - 1;  i < j; i++, j--)
>   {
>     c    = s[i];
>     s[i] = s[j];
>     s[j] = c;
>   }
> }
>
>
> > -----Original Message-----
> > From: Computational Chemistry List [mailto:chemistry-request@ccl.net]On
> > Behalf Of Krzysztof Radacki
> > Sent: Wednesday, March 13, 2002 3:43 AM
> > To: CCL
> > Subject: CCL:small linux/c++ question.
> >
> >
> > Dear CCL'ers
> > I have a little bit out of topic question.
> > Currently I'm translating my program from Borland C++
> > to gcc and I can't find a function itoa in gcc (it
> > converts integer to string).
> > I would be quite happy if someone could explaine me how
> > to do it in gcc.
> >
> > MfG
> > Krzysztof
> >
> > p.s.
> > because it's realy out-of-topic maybe better if answer
> > would be addressed directly to my e-mail not to ccl.
> >
> >
> > --
> > Dr. K.Radacki
> > Department of Chemistry
> > Catalysis and Advanced Materials Section
> > Imperial College, London
> >
> > CHEMISTRY@ccl.net -- To Everybody  | CHEMISTRY-REQUEST@ccl.net --
> > To Admins
> > CHEMISTRY-SEARCH@ccl.net -- archive search    |    Gopher:
> > gopher.ccl.net 70
> > Ftp: ftp.ccl.net  |  WWW: http://www.ccl.net/chemistry/   | Jan:
> > jkl@ccl.net
> >
> >
> >
> >
> >
> >
>
>
> -= This is automatically added to each message by mailing script =-
> CHEMISTRY@ccl.net -- To Everybody  | CHEMISTRY-REQUEST@ccl.net -- To Admins
> MAILSERV@ccl.net -- HELP CHEMISTRY or HELP SEARCH
> CHEMISTRY-SEARCH@ccl.net -- archive search    |    Gopher: gopher.ccl.net 70
> Ftp: ftp.ccl.net  |  WWW: http://www.ccl.net/chemistry/   | Jan: jkl@ccl.net
>
>
>
>
>





From chemistry-request@server.ccl.net Wed Mar 13 15:34:12 2002
Received: from mail.cs.tu-berlin.de (root@[130.149.17.13])
	by server.ccl.net (8.11.6/8.11.0) with ESMTP id g2DKYCp10030
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 15:34:12 -0500
Received: from eidfjord.cs.tu-berlin.de (daemon@eidfjord.cs.tu-berlin.de [130.149.17.26])
	by mail.cs.tu-berlin.de (8.9.3/8.9.3) with ESMTP id VAA19342
	for <chemistry@ccl.net>; Wed, 13 Mar 2002 21:33:04 +0100 (MET)
Received: (from anbeajbj@localhost)
	by eidfjord.cs.tu-berlin.de (8.11.6+Sun/8.9.3) id g2DKX4515732;
	Wed, 13 Mar 2002 21:33:04 +0100 (MET)
Date: Wed, 13 Mar 2002 21:33:04 +0100 (MET)
From: Andreas Bender <anbeajbj@cs.tu-berlin.de>
X-Sender: anbeajbj@eidfjord
To: Computational Chemistry List <chemistry@ccl.net>
Subject: Re: CCL:Electrostatic solvation model
In-Reply-To: <Pine.LNX.4.44.0203131718570.10716-100000@calvin.fecit.co.uk>
Message-ID: <Pine.SOL.4.10.10203132121290.15440-100000@eidfjord>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=ISO-8859-1
Content-Transfer-Encoding: 8bit
X-MIME-Autoconverted: from QUOTED-PRINTABLE to 8bit by server.ccl.net id g2DKYCp10031

Hi Andrew,

I want to give you a simple illustration to your equation:

a) For a point charge, you have E = Q / (r * r)  (in non SI-units).

b) Integrate that with respect to r, and you have U(r)= Q / r.

c) You have interactions each particle with each other particle. So
you have to sum up with respect to i and j.

d) But - now you counted each interaction twice! Divide by 2, and you have
the equation you mentioned.

I hope that was your point, 
Good luck,
Andreas


On Wed, 13 Mar 2002, Andrew Horsfield wrote:

> Can anyone point me to a proof of the following equation for the 
> electrostatic contribution to the solvation energy:
> 
>   U = 1/2 \sum_{ij} Q_i q_j / r_{ij}


Mit freundlichen Grüssen,
Andreas Bender

Andreas Kieron Patrick Bender
http://www.andreasbender.de




