Subject: Re: CCL:how i can get detailed secondary structure from coordinate file?

From: "Jerry Song" <[email-masked]>
Date: Wed, 3 Apr 2002 16:43:20 -0500

Rasmol. you can open it and then concert it to molscript file (you need to
download the executable molscript program and set up the proper path), which
will contain the secondry structure infomation you need.

the format will be :

.....
  turn residue 10;
  turn residue 11;
  turn residue 12;
 set planecolour green;
  coil from 10 to 13;
  set planecolour rgb 1 0 0;
  helix from 13 to 28;
  turn residue 28;
......

> ----- Original Message -----
> From: "Zhangxd" <[email-masked]>
> To: "Jeff Nauss" <[email-masked]>
> Cc: <[email-masked]>
> Sent: Monday, February 04, 2002 5:56 PM
> Subject: CCL:how i can get detailed secondary structure from coordinate
> file?
>
>
> > Dear All,
> > during my research, i need the detailed information about secondary
> > structure of my biology system, i had its coordinate file, how i can get
> > its secondary structure information from this coordinate file? just like
> > the following:
> > Resi. 1 to Resi. 10 AlphaHelix
> > Resi. 15 to Resi. 25 BetaSheet
> > >..................
> > >...............
> >
> > hopefully it should be a program can do this automatically.
> > i had tried VMD, it just gives the graph of secondary structure of
> > the sequence but not a detailed text information like the above sample.
> >
> > thanks in advance!!!!
> >
> >
> >
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