From: Ishita sharma <[email-masked]>
Date: Wed, 5 Jun 2002 03:35:41 +0100 (BST)

Sir,
       I am pooja,just joined into the field of
molecular modeling in INDIA.i have a peptide which has
a sequence 
	 GEWTWDDATKTWTWTEGGGGFALFALFA
The first part of this sequence that is
	GEWTWDDATKTWTWTE is known to have a beta-hairpin
structure and the other part GGGG is a linker FALFALFA
forms a helix,i wish to know how the peptide will fold
if i join all these together ,i ahve the pdb file for
GEWTWDDATKTWTWTE and for the other part i have
generated using INSIGHTII ,so i have a pdb file for
the entire sequence which corresponds to a
beta-beta-alpha motif,i just want to know whether it
will actually make  this motif using AMBER(molecular
dynamics and minimisation).Is AMBER the correct choice
or should i use some other software as i have been
told that it is not necessary that AMBER would predict
the correct structure,do you have any idea where else
this kind of peptide structure prediction studies are
carried out.

                  Waiting for your reply
                      Thanks
                             with regards
                              pooja

__________________________________________________
Do You Yahoo!?
Everything you'll ever need on one web page
> from News and Sport to Email and Music Charts
http://uk.my.yahoo.com