From chemistry-request@ccl.net Wed Jul 21 06:25:59 2004
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Date: Wed, 21 Jul 2004 15:15:48 +0400
From: Dmitry Rozmanov <dima|at|xenon.spb.ru>
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To: CCL <chemistry|at|ccl.net>
Subject: Re: CCL:force constants of diatomics in GAUSSIAN-03
References: <40F5307B.1020909|at|xenon.spb.ru> <40FC1BDF.1010700|at|xenon.spb.ru> <a05111b00bd22602b52aa@[192.38.70.75]> <40FD869D.4060002|at|xenon.spb.ru> <a05111b01bd23dbb0a52a@[192.38.70.75]>
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Hi Per-Ola,

This is about NO vibration.

Using mutiplicity of 2 I can get the ground state of the system. I guess if this 
is an equlibrium state there is no problem with exitation and such.

Check for yourself:

This is what Gaussian says:

  Harmonic frequencies (cm**-1), IR intensities (KM/Mole), Raman scattering
  activities (A**4/AMU), depolarization ratios for plane and unpolarized
  incident light, reduced masses (AMU), force constants (mDyne/A),
  and normal coordinates:
                      1
                     SG
  Frequencies --  2117.8243
  Red. masses --    14.8673
  Frc consts  --    39.2882
  IR Inten    --    86.4086
  Atom AN      X      Y      Z
    1   7     0.00   0.00   0.75
    2   8     0.00   0.00  -0.66

This is what GAMESS (US) says:

-------------------------------------------------------------------------------
          INTRINSIC VIBRATIONAL FREQUENCIES AND FORCE CONSTANTS
  FREQUENCIES AND FORCE CONSTANTS IN PARENTHESES SCALED BY 1.000 AND 1.000, RESP.
  -------------------------------------------------------------------------------
  INTERNAL COORDINATE        INTRINSIC FREQUENCIES
                                  (CM**-1)
  --------------------------------------------------

  STR.  2  1               2117.8       (2117.8    )

  --------------------------------------------------------------------
  INTERNAL COORDINATE                INTRINSIC FORCE CONSTANTS
                             (HARTREES/BOHR**2)        (MDYN/ANG)
  --------------------------------------------------------------------

  STR.  2  1                  1.2673  (  1.2673)     19.731  ( 19.731)


You see, the frequencies are perfectly the same and the units are the same.

However, I was pointed to a document which describes some pecularities of how 
Gaussian treats the reduced masses. I saw it before and I cannot still get how 
the same value with definite units can be different with two ways of calculation 
anyway.

Here is the link:
http://www.gaussian.com/g_whitepap/vib.htm#SECTION00036000000000000000

If this is the case, then I guess this is just a wrong way of doing things and 
the force constants got by Gaussian are not correct at all. There is a 
definition of the thing and there is no two way of calculation.

---Dmitry.

Per-Ola Norrby wrote:
>     Hi Dmitry
> 
>> I do no agree here. In fact I can do the same calculation with GAMESS 
>> (US) easily and get the meaningful result with the same method 
>> (ROHF/6-31G):
> 
> 
>     OK, I think you have two problems.  First, if GAMESS and G98 differ 
> that much, it's probably because you located two different states.  Have 
> you compared the total energies of the molecules, and the orbital 
> output?  I had a look in Jaguar, using C2v symmetry (I have to stay with 
> Abelian subgroups).  In that notation, the 2a1 state is high in energy, 
> whereas the 2b1 and 2b2 states are degenerate.  Watch out for this type 
> of situation!  The final wavefunction is completely dependent on the 
> first guess, it's very possible that Gaussian and GAMESS locate 
> different states (you can modify it in Gaussian using the GUESS 
> keyword).  And you can be quite sure that the 2b1 and 2b2 states will 
> not be correctly represented by a simple ROHF.
> 
>     I get my output as frequencies.  For the 2a1 state (the wrong one, 
> since it's high in energy), I get 943 cm-1, whereas 2b1 gives 2278 
> cm-1.  My guess is that GAMESS actually is the culprit here, locating 
> the high-energy state and thus giving a reasonable frequency for the 
> completely wrong reason.  You'd expect that an ROHF solution for a 
> problem that is inherently multideterminant would be expected to give a 
> too high force constant, like Gaussian is doing.
> 
>     And I know the problems of applying MCSCF to "real" situations, I'm 
> currently working with CASPT2 on some metal complexes.  Sometimes you 
> have to, when you run into problems that not even B3LYP or CCSD(T) can 
> handle...
> 
>     Regards,
> 
>     Per-Ola



From chemistry-request@ccl.net Wed Jul 21 11:15:53 2004
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Date: Wed, 21 Jul 2004 19:56:36 +0400
From: Dmitry Rozmanov <dima$at$xenon.spb.ru>
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To: CCL <chemistry$at$ccl.net>
Subject: Re: CCL:force constants of diatomics in GAUSSIAN-03
References: <Pine.HPX.4.21.0407211430070.26588-100000$at$gamma.dou.dk>
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Frank,

It could be true, however, this is not the case for HF, HCl, HBr, HI diatomics. 
Their constants are in agreement with others.

Could you point me to anything about calculation of the force constants via 
Taylor expasion, by the way. I feel I am interested in learning that thing.

Thank you for the response.

Best wishes.

	---Dmitry.


Frank Jensen wrote:
> 	Dmitry,
> 	Note that 2x19.731 = 39.462 ~ 39.2882
> 	The major difference is thus whether the 'force constant' includes
> the factor of 1/2 from the Taylor expansion or not. The remaining
> difference of 39.46 and 39.29 is most likely related to various 
> numerical differences in the two programs.
> 
> 	Frank
> 
> 
> On Wed, 21 Jul 2004, Dmitry Rozmanov wrote:
> 
> 
>>Hi Per-Ola,
>>
>>This is about NO vibration.
>>
>>Using mutiplicity of 2 I can get the ground state of the system. I guess if this 
>>is an equlibrium state there is no problem with exitation and such.
>>
>>Check for yourself:
>>
>>This is what Gaussian says:
>>
>>  Harmonic frequencies (cm**-1), IR intensities (KM/Mole), Raman scattering
>>  activities (A**4/AMU), depolarization ratios for plane and unpolarized
>>  incident light, reduced masses (AMU), force constants (mDyne/A),
>>  and normal coordinates:
>>                      1
>>                     SG
>>  Frequencies --  2117.8243
>>  Red. masses --    14.8673
>>  Frc consts  --    39.2882
>>  IR Inten    --    86.4086
>>  Atom AN      X      Y      Z
>>    1   7     0.00   0.00   0.75
>>    2   8     0.00   0.00  -0.66
>>
>>This is what GAMESS (US) says:
>>
>>-------------------------------------------------------------------------------
>>          INTRINSIC VIBRATIONAL FREQUENCIES AND FORCE CONSTANTS
>>  FREQUENCIES AND FORCE CONSTANTS IN PARENTHESES SCALED BY 1.000 AND 1.000, RESP.
>>  -------------------------------------------------------------------------------
>>  INTERNAL COORDINATE        INTRINSIC FREQUENCIES
>>                                  (CM**-1)
>>  --------------------------------------------------
>>
>>  STR.  2  1               2117.8       (2117.8    )
>>
>>  --------------------------------------------------------------------
>>  INTERNAL COORDINATE                INTRINSIC FORCE CONSTANTS
>>                             (HARTREES/BOHR**2)        (MDYN/ANG)
>>  --------------------------------------------------------------------
>>
>>  STR.  2  1                  1.2673  (  1.2673)     19.731  ( 19.731)
>>
>>
>>You see, the frequencies are perfectly the same and the units are the same.
>>
>>However, I was pointed to a document which describes some pecularities of how 
>>Gaussian treats the reduced masses. I saw it before and I cannot still get how 
>>the same value with definite units can be different with two ways of calculation 
>>anyway.
>>
>>Here is the link:
>>http://www.gaussian.com/g_whitepap/vib.htm#SECTION00036000000000000000
>>
>>If this is the case, then I guess this is just a wrong way of doing things and 
>>the force constants got by Gaussian are not correct at all. There is a 
>>definition of the thing and there is no two way of calculation.
>>
>>---Dmitry.
>>
>>Per-Ola Norrby wrote:
>>
>>>    Hi Dmitry
>>>
>>>
>>>>I do no agree here. In fact I can do the same calculation with GAMESS 
>>>>(US) easily and get the meaningful result with the same method 
>>>>(ROHF/6-31G):
>>>
>>>
>>>    OK, I think you have two problems.  First, if GAMESS and G98 differ 
>>>that much, it's probably because you located two different states.  Have 
>>>you compared the total energies of the molecules, and the orbital 
>>>output?  I had a look in Jaguar, using C2v symmetry (I have to stay with 
>>>Abelian subgroups).  In that notation, the 2a1 state is high in energy, 
>>>whereas the 2b1 and 2b2 states are degenerate.  Watch out for this type 
>>>of situation!  The final wavefunction is completely dependent on the 
>>>first guess, it's very possible that Gaussian and GAMESS locate 
>>>different states (you can modify it in Gaussian using the GUESS 
>>>keyword).  And you can be quite sure that the 2b1 and 2b2 states will 
>>>not be correctly represented by a simple ROHF.
>>>
>>>    I get my output as frequencies.  For the 2a1 state (the wrong one, 
>>>since it's high in energy), I get 943 cm-1, whereas 2b1 gives 2278 
>>>cm-1.  My guess is that GAMESS actually is the culprit here, locating 
>>>the high-energy state and thus giving a reasonable frequency for the 
>>>completely wrong reason.  You'd expect that an ROHF solution for a 
>>>problem that is inherently multideterminant would be expected to give a 
>>>too high force constant, like Gaussian is doing.
>>>
>>>    And I know the problems of applying MCSCF to "real" situations, I'm 
>>>currently working with CASPT2 on some metal complexes.  Sometimes you 
>>>have to, when you run into problems that not even B3LYP or CCSD(T) can 
>>>handle...
>>>
>>>    Regards,
>>>
>>>    Per-Ola
>>
>>
>>
>>-= This is automatically added to each message by the mailing script =-
>>To send e-mail to subscribers of CCL put the string CCL: on your Subject: line
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>>-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+
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>>
>>
>>
>>
> 
> 
> --------------------------------------------------
> | Frank Jensen, Chairman, Department of Chemistry|
> | University of Southern Denmark                 |
> | Campusvej 55, DK-5230 Odense, Denmark          |
> | FAX +45 66 15 87 80 , Voice +45 65 50 25 07    |
> | http://www.sdu.dk/Nat/Chem/STAFF/sci/FrjE.html |
> | http://bogense.chem.sdu.dk/~frj                |
> --------------------------------------------------
> 
> 



From chemistry-request@ccl.net Wed Jul 21 06:17:56 2004
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Date: Wed, 21 Jul 2004 12:24:04 +0200
From: angelo vargas <vargas.-at-.chem.ethz.ch>
Organization: ETHZ
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Subject: Gaussian problem, standard orientation VS Z-matrix orientation
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Hallo
I am posting this question for the second time since I got no solution yet.
Using Gaussian it happens that two geometry optimiz. jobs with an 
identical route section produce in the output in one case both the 
Z-matrix and the Standard Orientation, at every optimiz. step, while in 
the other case only the Standard Orientation (with loss of infos of the 
original form of the Z-mat).
Explicit addition of IOP(2/11=0) that should force printout of both 
Z-matrix and Standard Orientations (at every opt step) does not help. I 
can patch the problem I guess but would like to know what is the control 
procedure for matrix output, how can I control what infos i get in the 
output?

Both initial Z-matrixes contain dummies and geometrical constraints.

The route section for both jobs that produce different outputs are:

Gaussian 98:  HP-PARisc-HPUX-G98RevA.7 11-Apr-1999
                     13-Jul-2004
  **************************************************
  ------------------------------------------------------------
  #P HF/STO-3g Opt=Z-Matrix gfinput gfprint IOP(6/7=3) pop=full
  ------------------------------------------------------------
  1/10=7,18=40,38=1/1,3;
  2/17=6,18=5/2;
  3/11=9,24=11,25=1,30=1/1,2,3;
  4//1;
  5/5=2,38=4/2;
  6/7=3,28=1/1;
  7/29=1/1,2,3,16;
  1/10=7,18=40/3(1);
  99//99;
  2//2;
  3/11=9,25=1,30=1/1,2,3;
  4/5=5,16=2/1;
  5/5=2,38=4/2;
  7//1,2,3,16;
  1/18=40/3(-5);
  2//2;
  6/7=3,19=2,28=1/1;
  99/9=1/99;



Is it not possible to have a clear way to have Gaussian, without 
ambiguity, always produce the desired information in the output?

Thanks
Angelo



_______________________________________________________________________
Angelo Vargas
Institute for Chemical and Bio Engineering
Swiss Federal Institute of Technology (ETHZ)
ETH Hvnggerberg,   Telefon:  0041/1/633 42 32, Room HCl E 129
Z|rich - Switzerland       Fax:      0041/1/632 11 63
E-mail:   vargas.-at-.chem.ethz.ch
________________________________________________________________________



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To: chemistry.-at-.ccl.net
Subject: Re: CCL:force constants of diatomics in GAUSSIAN-03
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References: <40F5307B.1020909.-at-.xenon.spb.ru> <40FC1BDF.1010700.-at-.xenon.spb.ru> <a05111b00bd22602b52aa@[192.38.70.75]> <40FD869D.4060002.-at-.xenon.spb.ru> <a05111b01bd23dbb0a52a@[192.38.70.75]> <40FE5064.9030808.-at-.xenon.spb.ru>
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On Wed, Jul 21, 2004 at 03:15:48PM +0400, Dmitry Rozmanov wrote:
Dmitry Rozmanov wrote
> If this is the case, then I guess this is just a wrong way of doing things 
> and the force constants got by Gaussian are not correct at all. There is a
> definition of the thing and there is no two way of calculation.
> 
> ---Dmitry.
> 

This is nonsense.  The details are in a white paper on our web site,
but the key point is that the force constant is the second derivative
with respect to a normal mode displacement and the units for the
normal mode, or equivalently the convention for what consititues a
unit step, are arbitrary.

For polyatomic molecules, one typically diagonalizes the force
constant matrix in mass-weighted coordinates, so the natural unit step
is a normalized displacement in these coordinates.  This approach is
general and applicable to any polyatomic molecule.  In the particular
case of H2 with the molecule along the x-axis, this normalized step
would be (1/sqrt(2),0,0,1/sqrt(2),0,0) in the 6 cartesian coordinates.
This unit step changes the H-H distance by sqrt(2).  For the particular
case of diatomic molecules when people calculate by hand, they use the
distance between atoms as the coordinate, which simpler for diatomics
but doesn't apply to polyatomics.  In that coordinate system, a unit
displacement changes the distance by 1 rather than sqrt(2), so the force
constants (second derivatives of the energy) differ by a factor of 2.
The corresponding reduced masses for the mode also differ by a factor
of two and the frequency is the same.  

For the diatomic, the "by hand" coordinates give a reduced mass for
the mode which is the same as the overall reduced mass for the
molecule.  For a general polyatomic molecule, the reduced mass
corresponding to a particular mode is not an observable quantity and
is not defined until one adopts a convention for the (arbitrary) size
of a unit normal mode displacement.

Mike Frisch





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Dear Colleagues,

We are pleased to announce the international workshop, "Theoretical and
Computational Chemistry of Complex Systems", to be held on 3-7 January
2005 in Hong Kong. The workshop will focus on recent theoretical
developments, covering formulation, computational methods, and application
aspects, and aiming at understanding complex molecular systems for their
structure-function relations to chemical, biological and physical properties.
The workshop is also arranged in conjunction with "The 3rd Chinese Theoretical
and Computational Chemistry Conference (CTCCC-3)". The two proceeding CTCCC
were held in Dalian (2000) and Taipei (2002), respectively.

Registration will be limited; be sure to apply to participate soon. Updated
information about the conference can be found at:
http://yangtze.hku.hk/ct3c.htm

Important Dates:

30 November 2004:       Deadline of early registration  US$250($300 on-site)
30 November 2004:       Deadline of abstract submission

Correspondence:

Professor YiJing Yan
Department of Chemistry
Hong Kong University of Science and Technology
Kowloon, Hong Kong
Tel: (852) 23587388
Fax: (852) 23581594
email: yyan|at|ust.hk

Professor GuanHua Chen
Department of Chemistry
The University of Hong Kong
Pokfulam Road, Hong Kong
Tel: (852) 28592164
Fax: (852) 28571586
email: ghc|at|everest.hku.hk

ChiYung Yam and XiuJun Wang
on behalf on Profs. YiJing Yan and GuanHua Chen



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Date: Wed, 21 Jul 2004 11:55:43 +0200
From: Stanislav.Ivan{at}unibas.ch
To: chemistry{at}ccl.net
Subject: 2 questions
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Dear ccl'ers,
I have 2 questions regarding g03:
1. is it possible to restart previous TS calculation ?
2. how to define explicit (hydrogen) atoms in g03 ?

Thank you.


--
Stanislav Ivan
Universitdt Basel
Departement Chemie
St.Johanns-Ring 19
4056 Basel
Switzerland

Tel.: (+41) (61) 267 11 44
Email: stanislav.ivan{at}unibas.ch

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From chemistry-request@ccl.net Wed Jul 21 06:12:44 2004
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Subject: What are the distance ranges between molecules for different intermolecular forces
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Dear all,

Have you any idea of the distance ranges between molecules for
different intermolecular forces and van der Waals force? For example:
Strong hydrogen bonds
Weak hydrogen bonds
Ion-dipole interaction
dipole-dipole interaction
dipole-induced dipole interaction
induced dipole-induced dipole interacton

If possible, please give me references for them.

Thank you for your help and attention.

Regards,

Patrick

my email address is skpang_at_ctimail.com



