Subject: Autodock tool does not add hydrogens properly.

From: tmahfouz ^^^ yahoo.com
Date: Mon, 21 Feb 2005 16:07:26 -0600

Hello all,
I'm trying to dock a small molecule to a protein. To add hydrogens to the 
protein I use adt and it works well except only one lysine residue it does 
not add the third hydrogen to it, all othe lysines have three hydrogens.
Also, how to modify the protonation state of histidine residues to make some 
HD1 and some positively charged.
Thanks,
Tarek
tmahfouz ^^^ yahoo.com