From owner-chemistry@ccl.net Thu Jan 12 06:32:00 2006 From: "Roger Kevin Robinson r.robinson:imperial.ac.uk" To: CCL Subject: CCL:G: Gaussian 3 theory Message-Id: <-30468-060112063057-19692-x/nhc8QIb0PEcUYV3iR/SA|-|server.ccl.net> X-Original-From: Roger Kevin Robinson Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Thu, 12 Jan 2006 11:29:58 +0000 MIME-Version: 1.0 Sent to CCL by: Roger Kevin Robinson [r.robinson\a/imperial.ac.uk] Hi, Can any one give me any pointers on where to look for help on Gaussian-3 Theory. I've started here http://scitation.aip.org/getpdf/servlet/GetPDFServlet?filetype=pdf&id=JCPSA6000109000018007764000001&idtype=cvips Gaussian-3 (G3) theory for molecules containing first and second-row atoms Which seems a good place to start and have downloaded several other related papers including some on Gaussian 2 theory. I was just wondering if there were any books or anything i could look at which might be more helpful. Thanks for any help, Roger From owner-chemistry@ccl.net Thu Jan 12 08:38:00 2006 From: "Marcel Swart m.swart=-=few.vu.nl" To: CCL Subject: CCL:G: Gaussian 3 theory Message-Id: <-30469-060112083057-3787-1dQNvUFPoxi2TC/DAAuBqg##server.ccl.net> X-Original-From: Marcel Swart Content-Type: multipart/alternative; boundary=Apple-Mail-9--150542159 Date: Thu, 12 Jan 2006 13:54:07 +0100 Mime-Version: 1.0 (Apple Message framework v623) Sent to CCL by: Marcel Swart [m.swart-#-few.vu.nl] --Apple-Mail-9--150542159 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=WINDOWS-1252; delsp=yes; format=flowed See the following website: http://chemistry.anl.gov/compmat/comptherm.htm On Jan 12, 2006, at 12:36 PM, Roger Kevin Robinson =20 r.robinson:imperial.ac.uk wrote: > Sent to CCL by: Roger Kevin Robinson [r.robinson\a/imperial.ac.uk] > Hi, > > Can any one give me any pointers on where to look for help on > Gaussian-3 Theory. > > I've started here > http://scitation.aip.org/getpdf/servlet/GetPDFServlet?=20 > filetype=3Dpdf&id=3DJCPSA6000109000018007764000001&idtype=3Dcvips > Gaussian-3 (G3) theory for molecules containing first and second-row =20= > atoms > > Which seems a good place to start and have downloaded several other =20= > related papers including some on Gaussian 2 theory. =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96 dr. Marcel Swart Theoretische Chemie (kamer R152) Vrije Universiteit Amsterdam Faculteit der Exacte Wetenschappen De Boelelaan 1083 1081 HV Amsterdam The Netherlands T +31-(0)20-5987619 F +31-(0)20-5987629 E m.swart(-)few.vu.nl W http://www.few.vu.nl/~swart =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96 Starting May 1, 2006: ICREA researcher at Institut de Qu=EDmica Computacional Universitat de Girona Campus Montilivi 17071 Girona Catalunya (Spain) =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96 --Apple-Mail-9--150542159 Content-Transfer-Encoding: quoted-printable Content-Type: text/enriched; charset=WINDOWS-1252 See the following website: http://chemistry.anl.gov/compmat/comptherm.htm On Jan 12, 2006, at 12:36 PM, Roger Kevin Robinson r.robinson:imperial.ac.uk wrote: Sent to CCL by: Roger Kevin Robinson [r.robinson\a/imperial.ac.uk] Hi, Can any one give me any pointers on where to look for help on Gaussian-3 Theory. I've started here=20 = http://scitation.aip.org/getpdf/servlet/GetPDFServlet?filetype=3Dpdf&id=3D= JCPSA6000109000018007764000001&idtype=3Dcvips Gaussian-3 (G3) theory for molecules containing first and second-row atoms Which seems a good place to start and have downloaded several other related papers including some on Gaussian 2 theory. = Helvetica=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96 = Courierdr. Marcel Swart = Courier Theoretische Chemie (kamer R152) Vrije Universiteit Amsterdam Faculteit der Exacte Wetenschappen De Boelelaan 1083 1081 HV Amsterdam The Netherlands T +31-(0)20-5987619 F +31-(0)20-5987629 E m.swart(-)few.vu.nl W http://www.few.vu.nl/~swart = Helvetica=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96 = Courier0000,4040,8080Starting May 1, 2006: = Courier0000,4040,8080 ICREA researcher at Institut de Qu=EDmica Computacional Universitat de Girona Campus Montilivi 17071 Girona Catalunya (Spain) = Helvetica<= color>0000,4040,8080=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96=96= =96=96=96=96=96=96=96=96=96=96=96 --Apple-Mail-9--150542159-- From owner-chemistry@ccl.net Thu Jan 12 09:12:01 2006 From: "Vitaly Rassolov rassolov###mail.chem.sc.edu" To: CCL Subject: CCL:G: Gaussian 3 theory Message-Id: <-30470-060112084816-14884-n+Ozm/18DBLnSHt+qIhqcg_+_server.ccl.net> X-Original-From: Vitaly Rassolov Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed Date: Thu, 12 Jan 2006 08:11:32 -0500 (EST) MIME-Version: 1.0 Sent to CCL by: Vitaly Rassolov [rassolov]^[mail.chem.sc.edu] A useful, but not updated recently, web page on G3 is created by Larry Curtiss http://chemistry.anl.gov/compmat/g3theory.htm It has a list of references in the bibliography section. ---------------------------------------------------------- Vitaly Rassolov Dept. of Chemistry and Biochemistry (803) 777-7811 University of South Carolina fax (803) 777-9521 631 Sumter St Columbia, SC 29208 rassolov()mail.chem.sc.edu On Thu, 12 Jan 2006, Roger Kevin Robinson r.robinson:imperial.ac.uk wrote: > Sent to CCL by: Roger Kevin Robinson [r.robinson\a/imperial.ac.uk] > Hi, > > Can any one give me any pointers on where to look for help on > Gaussian-3 Theory. > > I've started here > http://scitation.aip.org/getpdf/servlet/GetPDFServlet?filetype=pdf&id=JCPSA6000109000018007764000001&idtype=cvips > Gaussian-3 (G3) theory for molecules containing first and second-row atoms > > Which seems a good place to start and have downloaded several other related papers including some on Gaussian 2 theory. > > I was just wondering if there were any books or anything i could look at which might be more helpful. > > Thanks for any help, > > Roger> > > From owner-chemistry@ccl.net Thu Jan 12 09:57:01 2006 From: "Marius Retegan retegan.marius+/-gmail.com" To: CCL Subject: CCL:G: Gaussian 03 optimizatio restart Message-Id: <-30471-060112085702-20045-DDDaOu1V847LlGCTcfVRdQ%x%server.ccl.net> X-Original-From: Marius Retegan Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset=ISO-8859-1 Date: Thu, 12 Jan 2006 12:27:29 +0100 MIME-Version: 1.0 Sent to CCL by: Marius Retegan [retegan.marius a gmail.com] Hello First of all I would like to say Happy New Year to all subscribers of CCL. I have a short question. Lets say that I have a completed optimization and I want to use the geometry and the guess from a intermediate step to start another job. It's this possible? I've search the Gaussian 03 manual but I couldn't find find somethig related to my problem. Any help would be appriciated. Thank you very much. From owner-chemistry@ccl.net Thu Jan 12 10:32:00 2006 From: "Tamas E. Gunda tgunda2005 : puma.unideb.hu" To: CCL Subject: CCL: Simple molecular graphics Message-Id: <-30472-060112073603-15632-+TjqmewJBQNzeb9ynCiOgQ=-=server.ccl.net> X-Original-From: "Tamas E. Gunda" Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset="iso-8859-15" Date: Thu, 12 Jan 2006 11:37:29 +0100 MIME-Version: 1.0 Sent to CCL by: "Tamas E. Gunda" [tgunda2005 * puma.unideb.hu] The 9th and the forthcoming 10 versions of Chem3D are capable to produce images with arbitrary resolutions (I tried up to 1200 dpi) in monochromatic (actually grayshade) mode, too. You can control rotations, edit bonds etc, but some things are more or less out of control, for example many features of atom labels are predefined. I think it is difficult to find a modelling program to fit exactly to our individual tastes. Often it might be necessary to edit the image or add special labels with an image editor like Photoshop. Dr. Tamas E. Gunda University of Debrecen Medical and Health Science Center Dept. of Pharmaceutical Chemistry POBox 36 H-4010 Debrecen Hungary e-mail: tgunda2005 *AT* puma.unideb.hu ----- Original Message ----- > From: "Leif Olson leif.olson~~kodak.com" To: "Gunda, Tamas E " Sent: Wednesday, January 11, 2006 19:05 Subject: CCL: Simple molecular graphics > Sent to CCL by: "Leif Olson" [leif.olson,,kodak.com] > Hi CCL people, > > I know this is similar to previous questions that have been sent to the list in the past. But I am going to ask it anyway...I keep searching for a program that will make simple publication quality molecular graphics pictures (usually black-and-white), but with a couple of added features, and runs on Windows or Linux. > > Vast numbers of molecular graphics programs are advertised for their capability to make "publication quality" images. But what this always seems to refer to is the ability to create stunning color pictures complete with shadows, fog effects, dramatic backgrounds, etc., perhaps rendered with the help of POV-Ray. Nice, but not what I usually need for figures to put into journal articles or technical reports. I usually just want ball-and-stick, black-and-white (or a simple color scheme to highlight heteroatoms), maybe some cross-hatching to suggest depth, and some labeling capability, with the end result a high-resolution image or vector output. > > An example of a program that comes pretty close to what I would like is XChemEdit, where I can read in a structure, and quickly rotate/translate it to a desired orientation. Then, with a few mouse clicks I can remove undesired bonds, make dashed bonds (e.g. for hydrogen bonds or transition states), label bond distances/angles/dihedrals, resize and move labels, etc. This only takes a minute or two, unfortunately the resulting images are not, in my opinion, good enough for external publication. They are nicely labeled and clear, but low-resolution. > > As an alternative, I have tried Schakal99, which can make excellent publication-quality b/w molecular graphics, and it seems that one has extensive control over the final image. But I find it difficult to use even after studying the manual and going through quite a few examples, and I am not sure that certain things like labeling bond angles can even be done. > > I have also looked at XBS, Molden, ORTEP, and WebLab Viewer, but they aren't quite what I am looking for either. We don't own Cache, Chem3D, or Gaussview, so I haven't tried them...what about those or other software? Is it best to just put in the time to really learn Schakal usage? Would you agree that fancy photorealistic "publication quality" graphics are often discouraged by journal editors anyway? > > Thanks! > > Leif Olson > Eastman Kodak Research Laboratories > From owner-chemistry@ccl.net Thu Jan 12 11:48:00 2006 From: "Eric Breynaert eric.breynaert()biw.kuleuven.be" To: CCL Subject: CCL:G: Gaussian 03 optimizatio restart Message-Id: <-30473-060112114401-26173-K9vlARa+PT9Ybv2tCndjLA||server.ccl.net> X-Original-From: Eric Breynaert Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="iso-8859-1"; format=flowed Date: Thu, 12 Jan 2006 16:46:17 +0100 Mime-Version: 1.0 Sent to CCL by: Eric Breynaert [eric.breynaert^_^biw.kuleuven.be] At 16:10 12/01/2006, you wrote: >Sent to CCL by: Marius Retegan [retegan.marius a gmail.com] >Hello >First of all I would like to say Happy New Year to all subscribers of CCL. >I have a short question. Lets say that I have a completed optimization >and I want to use the geometry and the guess from a intermediate step geometry is easy just write: geom=(check,step=??) for the guess i don't know the solution. >to start another job. It's this possible? >I've search the Gaussian 03 manual but I couldn't find find somethig >related to my problem. >Any help would be appriciated. >Thank you very much.-- Eric Breynaert Labo voor Colloïdchemie Kasteelpark Arenberg 23 B-3001 Leuven Tel: +3216321457 Fax: +3216321998 Disclaimer: http://www.kuleuven.be/cwis/email_disclaimer.htm From owner-chemistry@ccl.net Thu Jan 12 13:08:01 2006 From: "skpang,ctimail.com" To: CCL Subject: CCL: software for solving mathematics equations Message-Id: <-30474-060112100310-5512-AQM8xQq2kzV6k2+NjhUjfw..server.ccl.net> X-Original-From: skpang(_)ctimail.com Date: Thu, 12 Jan 2006 23:03:03 +0800 (HKT) Sent to CCL by: skpang|*|ctimail.com Dear all, Is there any free software for doing calculus,and it can solve the symbolic equation like MathCAD? Regards, Patrick My e-mail address : skpang(0)ctimail.com From owner-chemistry@ccl.net Thu Jan 12 15:11:01 2006 From: "Victor Manuel Rosas-Garcia quimico69(!)yahoo.com" To: CCL Subject: CCL: software for solving mathematics equations Message-Id: <-30475-060112150116-11876-INQ7zZNhrbIAsRuWdxZAvA.@.server.ccl.net> X-Original-From: Victor Manuel Rosas-Garcia Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset=iso-8859-1 Date: Thu, 12 Jan 2006 11:01:07 -0800 (PST) MIME-Version: 1.0 Sent to CCL by: Victor Manuel Rosas-Garcia [quimico69^^^yahoo.com] Try Maxima http://maxima.sourceforge.net/ --- "skpang,ctimail.com" wrote: > Sent to CCL by: skpang|*|ctimail.com > Dear all, > > Is there any free software for doing calculus,and it can solve the > symbolic equation like MathCAD? > > Regards, > > Patrick > > My e-mail address : skpang ~ ctimail.com > Victor M. Rosas García, PhD Coordinador del Posgrado en Ciencias Facultad de Ciencias Quimicas, UANL e-mail: quimico69 * yahoo.com Tel: (81) 8329-4010 ext. 6253 Fax: (81) 8376-5375 __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com From owner-chemistry@ccl.net Thu Jan 12 15:45:00 2006 From: "Richard M. Casey rcasey() rmcbiosciences.com" To: CCL Subject: CCL: VHTS software Message-Id: <-30476-060112153643-30889-HIOaYbZi9IJJuSIi5l60qQ]![server.ccl.net> X-Original-From: "Richard M. Casey" Content-Type: multipart/alternative; boundary="----=_NextPart_000_0096_01C6177D.15F81AD0" Date: Thu, 12 Jan 2006 13:35:43 -0700 MIME-Version: 1.0 Sent to CCL by: "Richard M. Casey" [rcasey]*[rmcbiosciences.com] This is a multi-part message in MIME format. ------=_NextPart_000_0096_01C6177D.15F81AD0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable CCL'ers, Does anyone know if there is free (OpenSource) software available for = virtual high-throughput screening? We're interested in screening = virtual compound libraries and would like to use OpenSource applications = if they are available. Regards, Richard Casey ------=_NextPart_000_0096_01C6177D.15F81AD0 Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable
CCL'ers,
 
Does anyone know if there is free = (OpenSource)=20 software available for virtual high-throughput screening?  We're = interested=20 in screening virtual compound libraries and would like to use OpenSource = applications if they are available.
 
 
 
Regards,
Richard = Casey
------=_NextPart_000_0096_01C6177D.15F81AD0-- From owner-chemistry@ccl.net Thu Jan 12 16:30:01 2006 From: "John Bushnell bushnell ~~ chem.ucsb.edu" To: CCL Subject: CCL: Simple molecular graphics Message-Id: <-30477-060112162202-24074-/JcyxNyDOyNqXf9Ij34SvQ%%server.ccl.net> X-Original-From: John Bushnell Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed Date: Thu, 12 Jan 2006 13:21:54 -0800 (PST) MIME-Version: 1.0 Sent to CCL by: John Bushnell [bushnell{:}chem.ucsb.edu] We have used Chem3D and ChemDraw for making simple, clear figures for publication. Chem3D is pretty easy and intuitive, and you have a good range of control for how to diplay things (we're talking simple models here). Then you can just cut-and-paste your molecule into ChemDraw and add well formatted text, lines/arrows and so forth. I have found this to be the simplest, most reliable way to make clear figures with simple black/white molecule renderings. Figuring out which version to buy is interesting. They have a multitude of levels/ packages, but many include both Chem3D and ChemDraw. As our group has moved more towards larger, more complex things, UCSB Chimera has become the software of choice for making impressive full color pictures. Plus it's free for academic and non-commercial use. It does take a little while to figure out how to do things (as it does with most sophisticated programs) but the results are quite nice. - John On Thu, 12 Jan 2006, Tamas E. Gunda tgunda2005 : puma.unideb.hu wrote: > Sent to CCL by: "Tamas E. Gunda" [tgunda2005 * puma.unideb.hu] The 9th > and the forthcoming 10 versions of Chem3D are capable to produce images > with arbitrary resolutions (I tried up to 1200 dpi) in monochromatic > (actually grayshade) mode, too. You can control rotations, edit bonds > etc, but some things are more or less out of control, for example many > features of atom labels are predefined. > > I think it is difficult to find a modelling program to fit exactly to > our individual tastes. Often it might be necessary to edit the image or > add special labels with an image editor like Photoshop. > > Dr. Tamas E. Gunda > University of Debrecen > Medical and Health Science Center > Dept. of Pharmaceutical Chemistry > POBox 36 > H-4010 Debrecen > Hungary > e-mail: tgunda2005 *AT* puma.unideb.hu > > > ----- Original Message ----- >> From: "Leif Olson leif.olson~~kodak.com" > To: "Gunda, Tamas E " > Sent: Wednesday, January 11, 2006 19:05 > Subject: CCL: Simple molecular graphics > > >> Sent to CCL by: "Leif Olson" [leif.olson,,kodak.com] >> Hi CCL people, >> >> I know this is similar to previous questions that have been sent to the >> list in the past. But I am going to ask it anyway...I > keep searching for a program that will make simple publication quality > molecular graphics pictures (usually black-and-white), but with a couple > of added features, and runs on Windows or Linux. >> >> Vast numbers of molecular graphics programs are advertised for their >> capability to make "publication quality" images. But what > this always seems to refer to is the ability to create stunning color > pictures complete with shadows, fog effects, dramatic backgrounds, etc., > perhaps rendered with the help of POV-Ray. Nice, but not what I usually > need for figures to put into journal articles or technical reports. I > usually just want ball-and-stick, black-and-white (or a simple color > scheme to highlight heteroatoms), maybe some cross-hatching to suggest > depth, and some labeling capability, with the end result a > high-resolution image or vector output. >> >> An example of a program that comes pretty close to what I would like is >> XChemEdit, where I can read in a structure, and quickly > rotate/translate it to a desired orientation. Then, with a few mouse > clicks I can remove undesired bonds, make dashed bonds (e.g. for > hydrogen bonds or transition states), label bond > distances/angles/dihedrals, resize and move labels, etc. This only > takes a minute or two, unfortunately the resulting images are not, in my > opinion, good enough for external publication. They are nicely labeled > and clear, but low-resolution. >> >> As an alternative, I have tried Schakal99, which can make excellent >> publication-quality b/w molecular graphics, and it seems that > one has extensive control over the final image. But I find it difficult > to use even after studying the manual and going through quite a few > examples, and I am not sure that certain things like labeling bond > angles can even be done. >> >> I have also looked at XBS, Molden, ORTEP, and WebLab Viewer, but they >> aren't quite what I am looking for either. We don't own > Cache, Chem3D, or Gaussview, so I haven't tried them...what about those > or other software? Is it best to just put in the time to really learn > Schakal usage? Would you agree that fancy photorealistic "publication > quality" graphics are often discouraged by journal editors anyway? >> >> Thanks! >> >> Leif Olson >> Eastman Kodak Research Laboratories From owner-chemistry@ccl.net Thu Jan 12 22:08:00 2006 From: "Steven ccl+*+mail.sioc.ac.cn" To: CCL Subject: CCL: VHTS software Message-Id: <-30478-060112203831-3008-B3NBcWbz8mxnSOEpBNuh6w*server.ccl.net> X-Original-From: "Steven" Content-Type: Multipart/related; type="multipart/alternative"; boundary="------------Boundary-00=_4RA0BHK0000000000000" Date: Fri, 13 Jan 2006 08:59:28 +0800 MIME-Version: 1.0 Sent to CCL by: "Steven" [ccl[*]mail.sioc.ac.cn] --------------Boundary-00=_4RA0BHK0000000000000 Content-Type: Multipart/Alternative; boundary="------------Boundary-00=_4RA06RO0000000000000" --------------Boundary-00=_4RA06RO0000000000000 Content-Type: Text/Plain; charset="gb2312" Content-Transfer-Encoding: quoted-printable Hi, Casey,=0D =0D I know that eHits is free virtual screening software for academic use. Yo= u can either choose a web-service which is running via a Web-GUI on their s= ite Yet you should sign and fax us back the license agreement from the downl= oad page. =0D =0D http://www.simbiosys.ca/ehits/index.html=0D =0D Best regards!=0D =0D Steven=0D =0D =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=0D State Key Lab of Bio-organic and Natural Products Chemistry =0D Shanghai Institute of Organic Chemistry (SIOC), Chinese Academy of Scienc= es.=0D Addr. 354, Fenglin Road, Shanghai, China.=0D Tel.: +86-21-54925275=0D Email: yzhao*mail.sioc.ac.cn=0D =0D =0D =0D -------Original Message-------=0D =0D > From: Richard M. Casey rcasey() rmcbiosciences.com=0D Date: 01/13/06 05:47:06=0D To: Wang, Renxiao =0D Subject: CCL: VHTS software=0D =0D Sent to CCL by: "Richard M. Casey" [rcasey]*[rmcbiosciences.com]=0D This is a multi-part message in MIME format.=0D =0D ------=3D_NextPart_000_0096_01C6177D.15F81AD0=0D Content-Type: text/plain;=0D charset=3D"iso-8859-1"=0D Content-Transfer-Encoding: quoted-printable=0D =0D CCL'ers,=0D =0D Does anyone know if there is free (OpenSource) software available for =3D= =0D virtual high-throughput screening? We're interested in screening =3D=0D virtual compound libraries and would like to use OpenSource applications = =3D=0D if they are available.=0D =0D =0D =0D Regards,=0D Richard Casey=0D ------=3D_NextPart_000_0096_01C6177D.15F81AD0=0D Content-Type: text/html;=0D charset=3D"iso-8859-1"=0D Content-Transfer-Encoding: quoted-printable=0D =0D =0D =0D =0D =0D =0D =0D =0D
CCL'ers,
=0D
 
=0D
Does anyone know if there is free =3D= =0D (OpenSource)=3D20=0D software available for virtual high-throughput screening?  We're =3D= =0D interested=3D20=0D in screening virtual compound libraries and would like to use OpenSource = =3D=0D =0D applications if they are available.
=0D
 
=0D
 
=0D
 
=0D
Regards,
=0D
Richard =3D=0D Casey
=0D =0D ------=3D_NextPart_000_0096_01C6177D.15F81AD0--=0D =0D =0D =0D -=3D This is automatically added to each message by the mailing script =3D= -=0D=0D=0D=0D =0D=0D=0D =0D=0D=0D =0D Subscribe/Unsubscribe:=0D=0D =0D=0D =0D Job advertisements: http://www.ccl.net/jobs=0D =0D= =0D =0D=0D=0D =0D=0D =0D=0D =0D =0D =20 --------------Boundary-00=_4RA06RO0000000000000 Content-Type: Text/HTML; charset="gb2312" Content-Transfer-Encoding: quoted-printable
Hi, Casey,
 
I know that eHits is free virtual screening software for academ= ic use. You can either choose a web-service which is running via a Web-GU= I on their site. Yet you should sign and fax us back = the license agreement from the download page.
 
 
Best regards!
 
Steven
 
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
State Key Lab of Bio-organic and = Natural Products Chemistry
Shanghai Institute of Organic Chemistry (S= IOC), Chinese Academy of Sciences.
Addr. 354, Fenglin Road, Shanghai, = China.
Tel.: +86-21-54925275
Email: yzhao*mail.sioc.ac.cn<= BR>
 
 
-------Original Message-------
 
Date: 01/13/06 05:= 47:06
Subject: CCL: VHTS= software
 
Sent to CCL by: "Richard M. Casey" [rcasey]*[rmcbiosciences.com]
This is a multi-part message in MIME format.
 
------=3D_NextPart_000_0096_01C6177D.15F81AD0
Content-Type: text/plain;
  charset=3D"iso-8859-1"
Content-Transfer-Encoding: quoted-printable
 
CCL'ers,
 
Does anyone know if there is free (OpenSource) software available fo= r =3D
virtual high-throughput screening?  We're interested in sc= reening =3D
virtual compound libraries and would like to use OpenSource applicat= ions =3D
if they are available.
 
 
 
Regards,
Richard Casey
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<META content=3D3D"MSHTML 6.00.2900.2802" name=3D3DGENERATOR><= /DIV>
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<DIV><FONT face=3D3DArial size=3D3D2>CCL'ers,</FONT&g= t;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2></FONT>&n= bsp;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2>Does anyone know if= there is free =3D
(OpenSource)=3D20
software available for virtual high-throughput screening?&nbsp; = We're =3D
interested=3D20
in screening virtual compound libraries and would like to use OpenSo= urce =3D
 
applications if they are available.</FONT></DIV>
<DIV>&nbsp;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2></FONT>&n= bsp;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2></FONT>&n= bsp;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2>Regards,</FONT&g= t;</DIV>
<DIV><FONT face=3D3DArial size=3D3D2>Richard =3D
Casey</FONT></DIV></BODY></HTML>
 
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Subject: CCL: what is the unit of density of solvent in solvation calculation Message-Id: <-30479-060112212053-6732-EYqXH5q29MT+r7VVkf+EGQ^^server.ccl.net> X-Original-From: "zhihui gu" Sent to CCL by: "zhihui gu" [zhihui.gu||chemail.tamu.edu] hello, does anyone know the unit of the solvent density when defining solvent by using PCM model? Thanks!