From owner-chemistry@ccl.net Mon Feb 19 00:13:00 2007 From: "Olexandr Isayev alex]_[ccmsi.us" To: CCL Subject: CCL: GAMESS compilation error on AMD64 Message-Id: <-33639-070218235035-16846-j7A4aiQSQf5m3j+JOGBfoA|a|server.ccl.net> X-Original-From: "Olexandr Isayev" Date: Sun, 18 Feb 2007 23:50:32 -0500 Sent to CCL by: "Olexandr Isayev" [alex() ccmsi.us] Dear CCL members! I am trying to compile GAMESS on AMD Opteron (SUSE linux with gfortran and ACML 3.6). It fails with the error below during the code inlining. .. trudge.o umpddi.o vibanl.o vscf.o vvos.o zapddi.o zheev.o zmatrx.o qmmm.o vbdum.o neostb.o ../ddi/libddi.a -lpthread /opt/acml3.6.0/gfortran64_int64/lib/libacml.a unport.o: In function `setfm_': unport.f:(.text+0x37f): undefined reference to `loc_' unport.o: In function `tmdate_': unport.f:(.text+0xb14): undefined reference to `fdate_' unport.o: In function `logand_': unport.f:(.text+0x2e1): undefined reference to `and_' unport.o: In function `logor_': unport.f:(.text+0x2f1): undefined reference to `or_' unport.o: In function `logxor_': unport.f:(.text+0x341): undefined reference to `xor_' collect2: ld returned 1 exit status unset echo 0.564u 0.236s 0:00.84 94.0% 0+0k 0+0io 0pf+0w Any suggestionss are highly appreciated. Sincerely, Alexandr From owner-chemistry@ccl.net Mon Feb 19 04:29:00 2007 From: "ALBERT POATER TEIXIDOR albert.poater*o*udg.es" To: CCL Subject: CCL: Copy Message-Id: <-33640-070219034225-20491-/QLBNHGXO2KPgb0C+/YjdA__server.ccl.net> X-Original-From: "ALBERT POATER TEIXIDOR" Content-Transfer-Encoding: 8bit Content-Type: text/plain;charset=iso-8859-1 Date: Mon, 19 Feb 2007 09:42:08 +0100 (CET) MIME-Version: 1.0 Sent to CCL by: "ALBERT POATER TEIXIDOR" [albert.poater+*+udg.es] Dear Taye, There are different ways. You cant push the button IMP PANT and then insert paste the image and then cut the borders. Or saving the image in FILE and the SAVE IMAGE choosing the format (jpg, tiff... ) you want. See you, Albert > > Sent to CCL by: "Taye Beyene Demisse" [sene3095- -yahoo.com] > > Dear subscribers peace first. > I tried to copy an optimizd structure from gausview to word. > How can I copy and paste the optimized structure from gaussview to word. > Thank you. > Taye> > > > From owner-chemistry@ccl.net Mon Feb 19 05:41:02 2007 From: "Ding Xunlei dingxunlei-.-gmail.com" To: CCL Subject: CCL:G: G03-Excessive mixing of frozen core and valence orbitals Message-Id: <-33641-070219043228-24805-2hwD1ga3qFVWd/FbNh5DVQ%x%server.ccl.net> X-Original-From: Ding Xunlei Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset="gb2312" Date: Mon, 19 Feb 2007 09:38:53 +0800 Mime-Version: 1.0 Sent to CCL by: Ding Xunlei [dingxunlei^-^gmail.com] Dear All, I did a calculation using mp2 and I find an error below. Could you give me some suggestion? Thank you! This input file: ------------------------------------------------------------ #mp2/6-31G* test 0 1 H 0.000000 -0.917747 0.000000 F 0.000000 0.000000 0.000000 H 0.000000 1.956639 0.000000 F 0.000000 2.875828 0.000000 H 0.000000 -0.917747 -2.250000 F 0.000000 0.000000 -2.250000 H-bq 0.000000 1.956639 -2.250000 F-bq 0.000000 2.875828 -2.250000 ------------------------------------------------------------ The output file: ------------------------------------------------------------------- SCF Done: E(RHF) = -199.305447100 A.U. after 21 cycles Convg = 0.2272D-08 -V/T = 1.9654 S**2 = 0.0000 ExpMin= 1.61D-01 ExpMax= 7.00D+03 ExpMxC= 1.05D+03 IAcc=1 IRadAn= 1 AccDes= 1.00D-06 HarFok: IExCor= 205 AccDes= 1.00D-06 IRadAn= 1 IDoV=1 ScaDFX= 1.000000 1.000000 1.000000 1.000000 Largest valence mixing into a core orbital is 9.92D-01 Excessive mixing of frozen core and valence orbitals. Error termination via Lnk1e in /gaussian/03d02-xlf10/g03/l801.exe at Sat Feb 17 16:37:03 2007. Yours sincerely, Ding Xunlei 2007-02-19 ______________________________________________ From owner-chemistry@ccl.net Mon Feb 19 06:48:00 2007 From: "Kaliappan Muthukumar muthukumar2k3[#]yahoo.com" To: CCL Subject: CCL: Copy Message-Id: <-33642-070219063607-10610-KPyxRTV0WtmWQ3tOyovltw-,-server.ccl.net> X-Original-From: Kaliappan Muthukumar Content-Transfer-Encoding: 8bit Content-Type: multipart/alternative; boundary="0-1899320255-1171881355=:39856" Date: Mon, 19 Feb 2007 10:35:55 +0000 (GMT) MIME-Version: 1.0 Sent to CCL by: Kaliappan Muthukumar [muthukumar2k3]*[yahoo.com] --0-1899320255-1171881355=:39856 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit You have to save the structure as a image file first. then open it in paint. copy and paste it in word as you like. with my best wishes, MK "Taye Beyene Demisse sene3095^^yahoo.com" wrote: Sent to CCL by: "Taye Beyene Demisse" [sene3095- -yahoo.com] Dear subscribers peace first. I tried to copy an optimizd structure from gausview to word. How can I copy and paste the optimized structure from gaussview to word. Thank you. Tayehttp://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp://www.ccl.net/chemistry/sub_unsub.shtmlhttp://www.ccl.net/spammers.txtKaliappan Muthukumar, Computational Modelling Group, Tyndall National Institute, University College Cork, Lee Maltings, Prospect Row, Cork, Ireland Website : http://www.tyndall.ie/research/computational-modelling-group/members.html --------------------------------- Here’s a new way to find what you're looking for - Yahoo! Answers --0-1899320255-1171881355=:39856 Content-Type: text/html; charset=iso-8859-1 Content-Transfer-Encoding: 8bit
You have to save the structure as a image file first. then open it in paint. copy and paste it in word as you like.
 
with my best wishes,
MK

"Taye Beyene Demisse sene3095^^yahoo.com" <owner-chemistry- -ccl.net> wrote:

Sent to CCL by: "Taye Beyene Demisse" [sene3095- -yahoo.com]

Dear subscribers peace first.
I tried to copy an optimizd structure from gausview to word.
How can I copy and paste the optimized structure from gaussview to word.
Thank you.
Taye


http://www.ccl.net/cgi-bin/ccl/send_ccl_message
http://www.ccl.net/cgi-bin/ccl/send_ccl_message
http://www.ccl.net/chemistry/sub_unsub.shtml
http://www.ccl.net/spammers.txt






Kaliappan Muthukumar,
Computational Modelling Group,
Tyndall National Institute,
University College Cork,
Lee Maltings, Prospect Row,
Cork, Ireland
 


Here’s a new way to find what you're looking for - Yahoo! Answers --0-1899320255-1171881355=:39856-- From owner-chemistry@ccl.net Mon Feb 19 08:16:00 2007 From: "Jimmy Lawrence jlawrence[#]fuchinobe.oilfield.slb.com" To: CCL Subject: CCL: DRC visualization from MOPAC's results Message-Id: <-33643-070219071403-24870-XhWfgZGmbWKvyOrJiHYGhw]~[server.ccl.net> X-Original-From: Jimmy Lawrence Content-transfer-encoding: 7BIT Content-type: text/plain; charset=us-ascii Date: Mon, 19 Feb 2007 21:13:27 +0900 MIME-version: 1.0 Sent to CCL by: Jimmy Lawrence [jlawrence-x-fuchinobe.oilfield.slb.com] Hi everyone, I am sorry for asking this again, on the previous mail, I had a wrong subject title. I would like to know what will be the best way to visualize the output from MOPAC's DRC calculation (freeware preferable). What kind of programs you use, and what are the steps you use to visualize the molecule movement over time ? Thank you in advance, Jimmyhttp://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp://www.ccl.net/chemistry/sub_unsub.shtmlhttp://www.ccl.net/spammers.txt From owner-chemistry@ccl.net Mon Feb 19 08:51:00 2007 From: "saravanan biosaran2004-,-yahoo.com" To: CCL Subject: CCL: Need help to install amber7 in SGI IRIX 6.5 Message-Id: <-33644-070219010904-9859-c6ALrj/CA4OxMQHqHT4q1A(a)server.ccl.net> X-Original-From: saravanan Content-Type: multipart/alternative; boundary="0-1629252096-1171861733=:69397" Date: Sun, 18 Feb 2007 21:08:53 -0800 (PST) MIME-Version: 1.0 Sent to CCL by: saravanan [biosaran2004/a\yahoo.com] --0-1629252096-1171861733=:69397 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable sir,=0Ai am trying to install amber7in SGI IRIX 6.5=0A =0Acouldnt install, = got error=0A =0A> could not execute /usr/lib32/cmplrs/mfef77=0Aerror code 1= (bu21)=0A=0Ai found "mfef90" in "/usr/lib32/cmplrs" but mfef77 is not ther= e.=0A=0Awhat can be done to rectify this...=0A=0Alooking for reply.....=0A= =0A=0A =0A_________________________________________________________________= ___________________=0AWant to start your own business?=0ALearn how on Yahoo= ! Small Business.=0Ahttp://smallbusiness.yahoo.com/r-index --0-1629252096-1171861733=:69397 Content-Type: text/html; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable
=0A
sir,
=0A
i am trying to install amb= er7in SGI IRIX 6.5
=0A
 
=0A
couldnt install, got er= ror
=0A
 
=0A
> could not execute /usr/lib32/cmpl= rs/mfef77
=0A
error code 1 (bu21)
=0A
 
=0Ai found "mfef90" in "/usr/lib32/cmplrs" but mfef77 is not there.
=0A<= DIV> 
=0A
what can be done to rectify this...
=0A
&n= bsp;
=0A
looking for reply.....

=0A=0A
Never Miss an Email
Stay connected with Yahoo! Mail on your mobile= . Get started! --0-1629252096-1171861733=:69397-- From owner-chemistry@ccl.net Mon Feb 19 09:32:01 2007 From: "=?ISO-8859-2?Q?G=DCL_ALTINBA=AA?= galtinbas],[gmail.com" To: CCL Subject: CCL: Copy Message-Id: <-33645-070219071147-23222-cbLXTd1yHGWmheX/nmW3rA[A]server.ccl.net> X-Original-From: "=?ISO-8859-2?Q?G=DCL_ALTINBA=AA?=" Content-Type: multipart/alternative; boundary="----=_Part_32342_30185750.1171883814546" Date: Mon, 19 Feb 2007 13:16:54 +0200 MIME-Version: 1.0 Sent to CCL by: "=?ISO-8859-2?Q?G=DCL_ALTINBA=AA?=" [galtinbas\a/gmail.com] ------=_Part_32342_30185750.1171883814546 Content-Type: text/plain; charset=ISO-8859-9; format=flowed Content-Transfer-Encoding: base64 Content-Disposition: inline RGVhciBUYXllCkkgdGhpbmsgdGhlIHNob3J0ZXN0IHdheSB0byBjb3B5IGltYWdlIGlzIHRvIGNs aWNrIGltYWdlIGNhcHR1cmUgZnJvbSBlZGl0Cm1lbnUuIEltYWdlIGlzIGNvcGllZCBhdXRvbW90 aWNhbGx5IGFuZCB5b3UgY2FuIHBhc3RlIGFueXdoZXJlIHlvdSB3YW50ClNlZSB5b3UKR3VsCgpP biAyLzE5LzA3LCBBTEJFUlQgUE9BVEVSIFRFSVhJRE9SIGFsYmVydC5wb2F0ZXIqbyp1ZGcuZXMg PApvd25lci1jaGVtaXN0cnlAY2NsLm5ldD4gd3JvdGU6Cj4KPgo+IFNlbnQgdG8gQ0NMIGJ5OiAi QUxCRVJUIFBPQVRFUiBURUlYSURPUiIgW2FsYmVydC5wb2F0ZXIrKit1ZGcuZXNdCj4gRGVhciBU YXllLAo+IFRoZXJlIGFyZSBkaWZmZXJlbnQgd2F5cy4gWW91IGNhbnQgcHVzaCB0aGUgYnV0dG9u IElNUCBQQU5UIGFuZCB0aGVuCj4gaW5zZXJ0IHBhc3RlIHRoZSBpbWFnZSBhbmQgdGhlbiBjdXQg dGhlIGJvcmRlcnMuIE9yIHNhdmluZyB0aGUgaW1hZ2UgaW4KPiBGSUxFIGFuZCB0aGUgU0FWRSBJ TUFHRSBjaG9vc2luZyB0aGUgZm9ybWF0IChqcGcsIHRpZmYuLi4gKSB5b3Ugd2FudC4KPiBTZWUg eW91LAo+IEFsYmVydAo+Cj4KPiA+Cj4gPiBTZW50IHRvIENDTCBieTogIlRheWUgQmV5ZW5lIERl bWlzc2UiIFtzZW5lMzA5NS0gLXlhaG9vLmNvbV0KPiA+Cj4gPiBEZWFyIHN1YnNjcmliZXJzIHBl YWNlIGZpcnN0Lgo+ID4gSSB0cmllZCB0byBjb3B5IGFuIG9wdGltaXpkIHN0cnVjdHVyZSBmcm9t IGdhdXN2aWV3IHRvIHdvcmQuCj4gPiBIb3cgY2FuIEkgY29weSBhbmQgcGFzdGUgdGhlIG9wdGlt aXplZCBzdHJ1Y3R1cmUgZnJvbSBnYXVzc3ZpZXcgdG8gd29yZC4KPiA+IFRoYW5rIHlvdS4KPiA+ IFRheWU+Cj4gPgo+ID4KPiA+Cj4KPgo+Cj4gLT0gVGhpcyBpcyBhdXRvbWF0aWNhbGx5IGFkZGVk IHRvIGVhY2ggbWVzc2FnZSBieSB0aGUgbWFpbGluZyBzY3JpcHQgPS0KPiBUbyByZWNvdmVyIHRo ZSBlbWFpbCBhZGRyZXNzIG9mIHRoZSBhdXRob3Igb2YgdGhlIG1lc3NhZ2UsIHBsZWFzZSBjaGFu Z2UKPiB0aGUgc3RyYW5nZSBjaGFyYWN0ZXJzIG9uIHRoZSB0b3AgbGluZSB0byB0aGUgQCBzaWdu LiBZb3UgY2FuIGFsc28KPiBsb29rIHVwIHRoZSBYLU9yaWdpbmFsLUZyb206IGxpbmUgaW4gdGhl IG1haWwgaGVhZGVyLgo+Cj4gRS1tYWlsIHRvIHN1YnNjcmliZXJzOiBDSEVNSVNUUllAY2NsLm5l dCBvciB1c2U6Cj4gICAgICAgaHR0cDovL3d3dy5jY2wubmV0L2NnaS1iaW4vY2NsL3NlbmRfY2Ns X21lc3NhZ2UKPgo+IEUtbWFpbCB0byBhZG1pbmlzdHJhdG9yczogQ0hFTUlTVFJZLVJFUVVFU1RA Y2NsLm5ldCBvciB1c2UKPiAgICAgICBodHRwOi8vd3d3LmNjbC5uZXQvY2dpLWJpbi9jY2wvc2Vu ZF9jY2xfbWVzc2FnZQo+Cj4gU3Vic2NyaWJlL1Vuc3Vic2NyaWJlOgo+ICAgICAgIGh0dHA6Ly93 d3cuY2NsLm5ldC9jaGVtaXN0cnkvc3ViX3Vuc3ViLnNodG1sCj4KPiBCZWZvcmUgcG9zdGluZywg Y2hlY2sgd2FpdCB0aW1lIGF0OiBodHRwOi8vd3d3LmNjbC5uZXQKPgo+IEpvYjogaHR0cDovL3d3 dy5jY2wubmV0L2pvYnMKPiBDb25mZXJlbmNlczogaHR0cDovL3NlcnZlci5jY2wubmV0L2NoZW1p c3RyeS9hbm5vdW5jZW1lbnRzL2NvbmZlcmVuY2VzLwo+Cj4gU2VhcmNoIE1lc3NhZ2VzOiBodHRw Oi8vd3d3LmNjbC5uZXQvaHRkaWcgIChsb2dpbjogY2NsLCBQYXNzd29yZDogc2VhcmNoKQo+Cj4g SWYgeW91ciBtYWlsIGJvdW5jZXMgZnJvbSBDQ0wgd2l0aCA1LjcuMSBlcnJvciwgY2hlY2s6Cj4g ICAgICAgaHR0cDovL3d3dy5jY2wubmV0L3NwYW1tZXJzLnR4dAo+Cj4gUlRGSTogaHR0cDovL3d3 dy5jY2wubmV0L2NoZW1pc3RyeS9hYm91dGNjbC9pbnN0cnVjdGlvbnMvCj4KPiAtKy0rLSstKy0r LSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSst Ky0rLSsKPgo+Cj4KPgoKCi0tIApH/GwgQWx0/W5iYf4g1npw/W5hcgpSZXNlYXJjaCBBc3Npc3Rh bnQKTWFybWFyYSBVbml2ZXJzaXR5CkFydHMmU2NpZW5jZXMgRmFjdWx0eQpDaGVtaXN0cnkgRGVw YXJ0bWVudApH9np0ZXBlIENhbXB1cyAzNDcyMgpJc3RhbmJ1bCAvIFR1cmtleQpQaG9uZSBObzog KzkwIDIxNiAzNDcgOTYgNDEgLSAxMTY3CkZheCBObzogKyA5MCAyMTYgMzQ3IDg3IDgzCg== ------=_Part_32342_30185750.1171883814546 Content-Type: text/html; charset=ISO-8859-9 Content-Transfer-Encoding: base64 Content-Disposition: inline RGVhciBUYXllIDxicj5JIHRoaW5rIHRoZSBzaG9ydGVzdCB3YXkgdG8gY29weSBpbWFnZSBpcyB0 byBjbGljayBpbWFnZSBjYXB0dXJlIGZyb20gZWRpdCBtZW51LiBJbWFnZSBpcyBjb3BpZWQgYXV0 b21vdGljYWxseSBhbmQgeW91IGNhbiBwYXN0ZSBhbnl3aGVyZSB5b3Ugd2FudDxicj5TZWUgeW91 PGJyPkd1bDxicj48YnI+PGRpdj48c3BhbiBjbGFzcz0iZ21haWxfcXVvdGUiPk9uIDIvMTkvMDcs IAo8YiBjbGFzcz0iZ21haWxfc2VuZGVybmFtZSI+QUxCRVJUIFBPQVRFUiBURUlYSURPUiBhbGJl cnQucG9hdGVyKm8qdWRnLmVzPC9iPiAmbHQ7PGEgaHJlZj0ibWFpbHRvOm93bmVyLWNoZW1pc3Ry eUBjY2wubmV0Ij5vd25lci1jaGVtaXN0cnlAY2NsLm5ldDwvYT4mZ3Q7IHdyb3RlOjwvc3Bhbj48 YmxvY2txdW90ZSBjbGFzcz0iZ21haWxfcXVvdGUiIHN0eWxlPSJib3JkZXItbGVmdDogMXB4IHNv bGlkIHJnYigyMDQsIDIwNCwgMjA0KTsgbWFyZ2luOiAwcHQgMHB0IDBwdCAwLjhleDsgcGFkZGlu Zy1sZWZ0OiAxZXg7Ij4KPGJyPlNlbnQgdG8gQ0NMIGJ5OiAmcXVvdDtBTEJFUlQgUE9BVEVSIFRF SVhJRE9SJnF1b3Q7IFthbGJlcnQucG9hdGVyKyordWRnLmVzXTxicj5EZWFyIFRheWUsPGJyPlRo ZXJlIGFyZSBkaWZmZXJlbnQgd2F5cy4gWW91IGNhbnQgcHVzaCB0aGUgYnV0dG9uIElNUCBQQU5U IGFuZCB0aGVuPGJyPmluc2VydCBwYXN0ZSB0aGUgaW1hZ2UgYW5kIHRoZW4gY3V0IHRoZSBib3Jk ZXJzLiBPciBzYXZpbmcgdGhlIGltYWdlIGluCjxicj5GSUxFIGFuZCB0aGUgU0FWRSBJTUFHRSBj aG9vc2luZyB0aGUgZm9ybWF0IChqcGcsIHRpZmYuLi4gKSB5b3Ugd2FudC48YnI+U2VlIHlvdSw8 YnI+QWxiZXJ0PGJyPjxicj48YnI+Jmd0Ozxicj4mZ3Q7IFNlbnQgdG8gQ0NMIGJ5OiAmcXVvdDtU YXllIEJleWVuZSBEZW1pc3NlJnF1b3Q7IFtzZW5lMzA5NS0gLTxhIGhyZWY9Imh0dHA6Ly95YWhv by5jb20iPnlhaG9vLmNvbTwvYT5dCjxicj4mZ3Q7PGJyPiZndDsgRGVhciBzdWJzY3JpYmVycyBw ZWFjZSBmaXJzdC48YnI+Jmd0OyBJIHRyaWVkIHRvIGNvcHkgYW4gb3B0aW1pemQgc3RydWN0dXJl IGZyb20gZ2F1c3ZpZXcgdG8gd29yZC48YnI+Jmd0OyBIb3cgY2FuIEkgY29weSBhbmQgcGFzdGUg dGhlIG9wdGltaXplZCBzdHJ1Y3R1cmUgZnJvbSBnYXVzc3ZpZXcgdG8gd29yZC48YnI+Jmd0OyBU aGFuayB5b3UuPGJyPiZndDsgVGF5ZSZndDsKPGJyPiZndDs8YnI+Jmd0Ozxicj4mZ3Q7PGJyPjxi cj48YnI+PGJyPi09IFRoaXMgaXMgYXV0b21hdGljYWxseSBhZGRlZCB0byBlYWNoIG1lc3NhZ2Ug YnkgdGhlIG1haWxpbmcgc2NyaXB0ID0tPGJyPlRvIHJlY292ZXIgdGhlIGVtYWlsIGFkZHJlc3Mg b2YgdGhlIGF1dGhvciBvZiB0aGUgbWVzc2FnZSwgcGxlYXNlIGNoYW5nZTxicj50aGUgc3RyYW5n ZSBjaGFyYWN0ZXJzIG9uIHRoZSB0b3AgbGluZSB0byB0aGUgQCBzaWduLiBZb3UgY2FuIGFsc28K PGJyPmxvb2sgdXAgdGhlIFgtT3JpZ2luYWwtRnJvbTogbGluZSBpbiB0aGUgbWFpbCBoZWFkZXIu PGJyPjxicj5FLW1haWwgdG8gc3Vic2NyaWJlcnM6IDxhIGhyZWY9Im1haWx0bzpDSEVNSVNUUllA Y2NsLm5ldCI+Q0hFTUlTVFJZQGNjbC5uZXQ8L2E+IG9yIHVzZTo8YnI+Jm5ic3A7Jm5ic3A7Jm5i c3A7Jm5ic3A7Jm5ic3A7Jm5ic3A7PGEgaHJlZj0iaHR0cDovL3d3dy5jY2wubmV0L2NnaS1iaW4v Y2NsL3NlbmRfY2NsX21lc3NhZ2UiPmh0dHA6Ly93d3cuY2NsLm5ldC9jZ2ktYmluL2NjbC9zZW5k X2NjbF9tZXNzYWdlCjwvYT48YnI+PGJyPkUtbWFpbCB0byBhZG1pbmlzdHJhdG9yczogPGEgaHJl Zj0ibWFpbHRvOkNIRU1JU1RSWS1SRVFVRVNUQGNjbC5uZXQiPkNIRU1JU1RSWS1SRVFVRVNUQGNj bC5uZXQ8L2E+IG9yIHVzZTxicj4mbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDs8 YSBocmVmPSJodHRwOi8vd3d3LmNjbC5uZXQvY2dpLWJpbi9jY2wvc2VuZF9jY2xfbWVzc2FnZSI+ aHR0cDovL3d3dy5jY2wubmV0L2NnaS1iaW4vY2NsL3NlbmRfY2NsX21lc3NhZ2UKPC9hPjxicj48 YnI+U3Vic2NyaWJlL1Vuc3Vic2NyaWJlOjxicj4mbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDsmbmJz cDsmbmJzcDs8YSBocmVmPSJodHRwOi8vd3d3LmNjbC5uZXQvY2hlbWlzdHJ5L3N1Yl91bnN1Yi5z aHRtbCI+aHR0cDovL3d3dy5jY2wubmV0L2NoZW1pc3RyeS9zdWJfdW5zdWIuc2h0bWw8L2E+PGJy Pjxicj5CZWZvcmUgcG9zdGluZywgY2hlY2sgd2FpdCB0aW1lIGF0OiA8YSBocmVmPSJodHRwOi8v d3d3LmNjbC5uZXQiPmh0dHA6Ly93d3cuY2NsLm5ldAo8L2E+PGJyPjxicj5Kb2I6IDxhIGhyZWY9 Imh0dHA6Ly93d3cuY2NsLm5ldC9qb2JzIj5odHRwOi8vd3d3LmNjbC5uZXQvam9iczwvYT48YnI+ Q29uZmVyZW5jZXM6IDxhIGhyZWY9Imh0dHA6Ly9zZXJ2ZXIuY2NsLm5ldC9jaGVtaXN0cnkvYW5u b3VuY2VtZW50cy9jb25mZXJlbmNlcy8iPmh0dHA6Ly9zZXJ2ZXIuY2NsLm5ldC9jaGVtaXN0cnkv YW5ub3VuY2VtZW50cy9jb25mZXJlbmNlcy8KPC9hPjxicj48YnI+U2VhcmNoIE1lc3NhZ2VzOiA8 YSBocmVmPSJodHRwOi8vd3d3LmNjbC5uZXQvaHRkaWciPmh0dHA6Ly93d3cuY2NsLm5ldC9odGRp ZzwvYT4mbmJzcDsmbmJzcDsobG9naW46IGNjbCwgUGFzc3dvcmQ6IHNlYXJjaCk8YnI+PGJyPklm IHlvdXIgbWFpbCBib3VuY2VzIGZyb20gQ0NMIHdpdGggNS43LjEgZXJyb3IsIGNoZWNrOjxicj4m bmJzcDsmbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDsmbmJzcDs8YSBocmVmPSJodHRwOi8vd3d3LmNj bC5uZXQvc3BhbW1lcnMudHh0Ij4KaHR0cDovL3d3dy5jY2wubmV0L3NwYW1tZXJzLnR4dDwvYT48 YnI+PGJyPlJURkk6IDxhIGhyZWY9Imh0dHA6Ly93d3cuY2NsLm5ldC9jaGVtaXN0cnkvYWJvdXRj Y2wvaW5zdHJ1Y3Rpb25zLyI+aHR0cDovL3d3dy5jY2wubmV0L2NoZW1pc3RyeS9hYm91dGNjbC9p bnN0cnVjdGlvbnMvPC9hPjxicj48YnI+LSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSst Ky0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rLSstKy0rCjxicj48YnI+PGJyPjxicj48 L2Jsb2NrcXVvdGU+PC9kaXY+PGJyPjxiciBjbGVhcj0iYWxsIj48YnI+LS0gPGJyPkf8bCBBbHT9 bmJh/iDWenD9bmFyPGJyPlJlc2VhcmNoIEFzc2lzdGFudDxicj5NYXJtYXJhIFVuaXZlcnNpdHk8 YnI+QXJ0cyZhbXA7U2NpZW5jZXMgRmFjdWx0eSA8YnI+Q2hlbWlzdHJ5IERlcGFydG1lbnQ8YnI+ R/Z6dGVwZSBDYW1wdXMgMzQ3MjIgPGJyPklzdGFuYnVsIC8gVHVya2V5Cjxicj5QaG9uZSBObzog KzkwIDIxNiAzNDcgOTYgNDEgLSAxMTY3PGJyPkZheCBObzogKyA5MCAyMTYgMzQ3IDg3IDgzCg== ------=_Part_32342_30185750.1171883814546-- From owner-chemistry@ccl.net Mon Feb 19 10:07:01 2007 From: "Andreas Klamt klamt]_[cosmologic.de" To: CCL Subject: CCL: COSMOtherm training Message-Id: <-33646-070219094954-17594-2qW9SiyGRcvBitWzy3z18Q..server.ccl.net> X-Original-From: Andreas Klamt Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-15; format=flowed Date: Mon, 19 Feb 2007 15:19:24 +0100 MIME-Version: 1.0 Sent to CCL by: Andreas Klamt [klamt::cosmologic.de] Our next free COSMOtherm training will take place on April 3 in our office in Leverkusen, Germany. This is an excellent opportunity to learn about the power of our COSMOtherm program for the prediction of fluid phase thermodynamics based on quantum chemical calculations. Those who are interested may get an introduction to the add-on tools: - COSMOfrag: High-Throughput Screening with COSMOtherm - COSMOmic: COSMOtherm-based simulation of moleulces in micelles and biomembranes - COSMOsim: Drug similarity search based on sigma profiles and to the TURBOMOLE quantum chemical program package at the same occasion either in the evening or next day. Looking forward to your application Andreas Klamt -- ----------------------------------------------------------------------------- Dr. habil. Andreas Klamt COSMOlogic GmbH&CoKG Burscheider Str. 515 51381 Leverkusen, Germany Tel.: +49-2171-73168-1 Fax: +49-2171-73168-9 e-mail: klamt^cosmologic.de web: www.cosmologic.de ----------------------------------------------------------------------------- COSMOlogic Your Competent Partner for Computational Chemistry and Fluid Thermodynamics ----------------------------------------------------------------------------- From owner-chemistry@ccl.net Mon Feb 19 11:24:00 2007 From: "Frank Neese neese^thch.uni-bonn.de" To: CCL Subject: CCL:G: EPR on excited states Message-Id: <-33647-070219111703-30088-s21tyVqudIc83JyR6RYmCA^server.ccl.net> X-Original-From: Frank Neese Content-Type: text/plain; charset="us-ascii"; format=flowed Date: Mon, 19 Feb 2007 15:16:58 +0100 Mime-Version: 1.0 Sent to CCL by: Frank Neese [neese#%#thch.uni-bonn.de] Dear Tanja, the ORCA program - available for free at http://www.thch.uni-bonn.de/tc/orca/ - has comprehensive EPR capabilities and is extensively used now in the EPR community. I suppose that you talk mainly about excited triplet states and these present no particular problem. Please let me know if you need further information. Best regards, Frank At 13:40 16.02.2007, you wrote: >Sent to CCL by: Tanja van Mourik [tanja.vanmourik,,st-andrews.ac.uk] >Dear CCL'ers, > >One of my colleagues is interested in the calculation of EPR parameters in >electronically excited molecules. Does anyone know if there are programs >available that can do such calculations? I have seen publications using Dalton >to compute EPR parameters. Can it handle excited states, and if so, with which >methods? Can Gaussian do EPR? I cannot find much in the manual about this, but >there is some hint on such calculations in the description of the Output >keyword. > >Any hints are appreciated. > >Best wishes, > >Tanja >-- > ================================================================= > Tanja van Mourik > Royal Society University Research Fellow > School of Chemistry, University of St. Andrews > North Haugh, St. Andrews > Fife KY16 9ST, Scotland (UK) > > email: tanja.vanmourik[A]st-andrews.ac.uk > web: http://chemistry.st-and.ac.uk/staffmember.php?id=tvm > ============================================================== > > >------------------------------------------------------------------ >University of St Andrews Webmail: https://webmail.st-andrews.ac.uk From owner-chemistry@ccl.net Mon Feb 19 13:44:00 2007 From: "Shobe, David David.Shobe---sud-chemie.com" To: CCL Subject: CCL:G: G03-Excessive mixing of frozen core and valence orbitals Message-Id: <-33648-070219133748-29250-sY0f/B+VKit+lcn3g2/sLw-x-server.ccl.net> X-Original-From: "Shobe, David" Content-class: urn:content-classes:message Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="iso-8859-1" Date: Mon, 19 Feb 2007 19:37:15 +0100 MIME-Version: 1.0 Sent to CCL by: "Shobe, David" [David.Shobe=sud-chemie.com] Because you are using ghost atoms, there are empty core orbitals. The HF routine does not distinguish core orbitals from valence orbitals (at least I think this is true), but the MP2 defaults to MP2=FC (frozen core) which of coures does make the distinction. Note that 9.92D-01 = 0.992 = almost full occupancy! Perhaps using mp2=full would help, but then you'd have to redo any other mp2 calculations (you have to be consistent: either mp2=full everywhere or mp2=fc everywhere). A larger basis set like 6-311+G* or aug-cc-pVTZ is likely to improve matters. With more valence orbitals to choose from, there is less need to use the core orbital. The 6-31G* basis set is too small for accurate calculations of hydrogen bonding energies anyway, if that's what you're after. Again, you'd have to redo any calculations you've already performed using the smaller basis set. Regards, --David Shobe Süd-Chemie, Inc. Attention to detial is essentail. -----Original Message----- > From: owner-chemistry^^^ccl.net [mailto:owner-chemistry^^^ccl.net] Sent: Sunday, February 18, 2007 8:39 PM To: Shobe, David Subject: CCL:G: G03-Excessive mixing of frozen core and valence orbitals Sent to CCL by: Ding Xunlei [dingxunlei^-^gmail.com] Dear All, I did a calculation using mp2 and I find an error below. Could you give me some suggestion? Thank you! This input file: ------------------------------------------------------------ #mp2/6-31G* test 0 1 H 0.000000 -0.917747 0.000000 F 0.000000 0.000000 0.000000 H 0.000000 1.956639 0.000000 F 0.000000 2.875828 0.000000 H 0.000000 -0.917747 -2.250000 F 0.000000 0.000000 -2.250000 H-bq 0.000000 1.956639 -2.250000 F-bq 0.000000 2.875828 -2.250000 ------------------------------------------------------------ The output file: ------------------------------------------------------------------- SCF Done: E(RHF) = -199.305447100 A.U. after 21 cycles Convg = 0.2272D-08 -V/T = 1.9654 S**2 = 0.0000 ExpMin= 1.61D-01 ExpMax= 7.00D+03 ExpMxC= 1.05D+03 IAcc=1 IRadAn= 1 AccDes= 1.00D-06 HarFok: IExCor= 205 AccDes= 1.00D-06 IRadAn= 1 IDoV=1 ScaDFX= 1.000000 1.000000 1.000000 1.000000 Largest valence mixing into a core orbital is 9.92D-01 Excessive mixing of frozen core and valence orbitals. Error termination via Lnk1e in /gaussian/03d02-xlf10/g03/l801.exe at Sat Feb 17 16:37:03 2007. Yours sincerely, Ding Xunlei 2007-02-19 ______________________________________________http://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp://www.ccl.net/chemistry/sub_unsub.shtmlhttp://www.ccl.net/spammers.txtThis e-mail message may contain confidential and / or privileged information. If you are not an addressee or otherwise authorized to receive this message, you should not use, copy, disclose or take any action based on this e-mail or any information contained in the message. If you have received this material in error, please advise the sender immediately by reply e-mail and delete this message. Thank you. From owner-chemistry@ccl.net Mon Feb 19 16:13:00 2007 From: "Matteo Masetti matteo~~scfarm.unibo.it" To: CCL Subject: CCL:G: B3LYP/MPW1PW91 density Message-Id: <-33649-070219100602-25901-lSE/tHwMl4VLZ292wxVQgw[a]server.ccl.net> X-Original-From: "Matteo Masetti" Date: Mon, 19 Feb 2007 10:05:58 -0500 Sent to CCL by: "Matteo Masetti" [matteo.:.scfarm.unibo.it] Hi all, I'm not an expert user in density functional theory, and I'm interested in the computation of the electron density for some small organic molecules. I've performed some trial calculations on the ethane molecule by means of the G03 suite of programs, namely I've optimized the molecule using different functionals and basis set as well, hence I've retrived the density by means of the cubegen module. I've noticed that by integrating the density on the grid, I found a total density value of 26 and of 20 if the B3LYP or the MPW1PW91 functional is used, while no changing occurs (as expected) by changing the basis set. Could someone explain the above reported discrepancy? It seems that within the MPW1PW91 functional, core electrons are somehow "hidden" in the output... Am I wrong? Any suggestion would be appreciated. Thank you in advance! From owner-chemistry@ccl.net Mon Feb 19 19:05:01 2007 From: "Takumi Hori thori3jp*_*mac.com" To: CCL Subject: CCL:G: an error in terms of frequency calculation in Gaussian 03. Message-Id: <-33650-070219183159-22814-54DO3jncuE1sLWiNpsv0mg^-^server.ccl.net> X-Original-From: Takumi Hori Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed Date: Tue, 20 Feb 2007 07:56:30 +0900 Mime-Version: 1.0 (Apple Message framework v752.2) Sent to CCL by: Takumi Hori [thori3jp!=!mac.com] Dear CCL users, I got a following error in terms of frequency calculation in Gaussian03. > (Enter /opt/g03nscco64/g03/l716.exe) > Dipole =-5.74843628D-01-5.82225009D-01 2.70383092D-01 > Polarizability= 6.07153970D+02-3.92605031D+01 5.30253486D+02 > -6.00698286D+01-1.82463985D+01 2.60811735D+02 > Full mass-weighted force constant matrix: > Low frequencies --- Infinity NaN NaN NaN > NaN NaN > Low frequencies --- NaN NaN NaN > Molecule is non-linear but NTrRo=0. > Error termination via Lnk1e in /opt/g03nscco64/g03/l716.exe at Fri > Feb 16 13:04:48 2007. > Job cpu time: 3 days 15 hours 28 minutes 16.0 seconds. > File lengths (MBytes): RWF= 4756 Int= 0 D2E= 0 > Chk= 21 Scr= 1 > Could you please tell me possible reasons why gaussian gave such an error? Could anyone tell me how to fix this problem? Any suggestions are appreciated. Thank you very much in advance for your advice. Best regards, Takumi -- Dr. Takumi Hori Research & Development Laboratories Nippon Steel Chemical Co., Lid. 46-80 Nakabaru Sakinohama Tobata-ku, Kitakyushu, Fukuoka 804-8503 Japan Tel: +81-93-884-1621 Fax: +81-93-884-1923 E-mail: horitk*|*nscc.co.jp thori3jp*|*mac.com http://www.nscc.co.jp/english/index.html From owner-chemistry@ccl.net Mon Feb 19 22:32:01 2007 From: "Serge Gorelsky gorelsky:gmail.com" To: CCL Subject: CCL:G: Gaussian and (Morokuma's) energy decomposition analysis Message-Id: <-33651-070219222914-21839-qDuag5A6UJPG0xB/iFt0aA()server.ccl.net> X-Original-From: "Serge Gorelsky" Date: Mon, 19 Feb 2007 22:29:10 -0500 Sent to CCL by: "Serge Gorelsky" [gorelsky],[gmail.com] Hello, a few weeks ago someone (sorry, don't remember who) has posted a question to the CCL about a possibility of doing Morokuma's energy decomposition analysis in Gaussian. I am not sure if an answer was given by someone, but here is my reply: yes, it is possible to obtain the orbital interaction and (electrostatic + Pauli exchange) terms using Gaussian and AOMix-CDA (http://www.sg-chem.net). Best regards, Serge Gorelsky From owner-chemistry@ccl.net Mon Feb 19 23:08:01 2007 From: "Gustavo Seabra gustavo.seabra : gmail.com" To: CCL Subject: CCL: Need help to install amber7 in SGI IRIX 6.5 Message-Id: <-33652-070219213133-18894-PhcaYSKhurj/0Ieetq4Rnw\a/server.ccl.net> X-Original-From: "Gustavo Seabra" Content-Disposition: inline Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Mon, 19 Feb 2007 20:32:24 -0500 MIME-Version: 1.0 Sent to CCL by: "Gustavo Seabra" [gustavo.seabra _ gmail.com] Hi, In principle, I believe you could just go through your config.h file and change all references to mfef77 to mfef90, since F90 "should" recognize F77 commands, but I don't know this specific compiler. if needed, the compiler could also need a flag to recognize f77 formats. Anyway, you would be better off sending this question to the amber-reflector list. I believe there's more people with extensive experience in Amber there. Good luck, Gustavo. On 2/19/07, saravanan biosaran2004-,-yahoo.com wrote: > > > sir, > i am trying to install amber7in SGI IRIX 6.5 > > couldnt install, got error > > > could not execute /usr/lib32/cmplrs/mfef77 > error code 1 (bu21) > > i found "mfef90" in "/usr/lib32/cmplrs" but mfef77 is not there. > > what can be done to rectify this... > > looking for reply..... > ________________________________ > Never Miss an Email > Stay connected with Yahoo! Mail on your mobile. Get started!