From owner-chemistry@ccl.net Sun Jun 17 01:49:01 2007 From: "Jan Labanowski janl|speakeasy.net" To: CCL Subject: CCL: CCL is on vacations until July 4 Message-Id: <-34505-070617014712-24300-eUiEw27aDNyOdj4fEPZBhw]|[server.ccl.net> X-Original-From: "Jan Labanowski" Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset="iso-8859-1" Date: Sun, 17 Jun 2007 05:46:35 +0000 MIME-Version: 1.0 Sent to CCL by: "Jan Labanowski" [janl]*[speakeasy.net] Dear CCL, Just to warn you that CCL will run on God's will until July 4, since I am now in California on vacations/college_tour_for_my_son. I just ate an overpriced pizza in Hollywood and, on the wireless in the Traveloge (the frugal I am) I found out that CCL still runs. So keep your fingers crossed and pray that some storm does not knock the electricity whatever. There is nobody to "push the button". I will be staying in places with Internet access, but I will be busy wasting my time in Zoo's, Disneylands, Universal Studios, etc. and taking "campus tours". The family duties... So if I do not process messages soon enough, I was probably enjoying some ride... Thank you for your understanding... Jan Labanowski, jkl,ccl.net From owner-chemistry@ccl.net Sun Jun 17 11:35:00 2007 From: "elite 158 elite158]-[gmail.com" To: CCL Subject: CCL: Free Program or software for exploring binding site of new homolog Message-Id: <-34506-070617015651-27474-f/1wLbKI6HNCQJSswNteEQ(-)server.ccl.net> X-Original-From: "elite 158" Content-Type: multipart/alternative; boundary="----=_Part_654_773330.1182056317784" Date: Sun, 17 Jun 2007 10:28:37 +0530 MIME-Version: 1.0 Sent to CCL by: "elite 158" [elite158---gmail.com] ------=_Part_654_773330.1182056317784 Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 7bit Content-Disposition: inline Hi One could charecterize binding sites of a protein using Insight II or Discovery Studio 1.7 by Accelrys. Check out www.accelrys.com regards, On 6/16/07, Uzma Mahmood mehmoodchemist++gmail.com wrote: > > > Sent to CCL by: "Uzma Mahmood" [mehmoodchemist-.-gmail.com] > Hello, > > I build up a new homolog but i could not be able to identify or > characterize > the binding site of this homolog, > > Anyone can suggest me about the free program or software that can be used > to > explore the binding site of homologs. > > Regards> > > > ------=_Part_654_773330.1182056317784 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit Content-Disposition: inline
Hi
One could charecterize binding sites of a protein using Insight II or Discovery Studio 1.7 by Accelrys. Check out www.accelrys.com
 
 
regards,

 
On 6/16/07, Uzma Mahmood mehmoodchemist++gmail.com <owner-chemistry-x-ccl.net> wrote:

Sent to CCL by: "Uzma  Mahmood" [mehmoodchemist-.-gmail.com]
Hello,

I build up a new homolog but i could not be able to identify or characterize
the binding site of this homolog,

Anyone can suggest me about the free program or software that can be used to
explore the binding site of homologs.

Regards



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------=_Part_654_773330.1182056317784-- From owner-chemistry@ccl.net Sun Jun 17 13:58:01 2007 From: "Michael Schmuker michael.schmuker ~ chemie.uni-frankfurt.de" To: CCL Subject: CCL: Free Program or software for exploring binding site of new homolog Message-Id: <-34507-070617132822-10102-8/D/dF8hDclIKDUE5T3HnA ~~ server.ccl.net> X-Original-From: Michael Schmuker Content-Disposition: inline Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset="iso-8859-15" Date: Sun, 17 Jun 2007 18:41:38 +0200 MIME-Version: 1.0 Sent to CCL by: Michael Schmuker [michael.schmuker[-]chemie.uni-frankfurt.de] Hi Mahmood, If you want to identify binding pockets in arbitrary protein structures, you may want to try PocketPicker: http://gecco.org.chemie.uni-frankfurt.de/pocketpicker/index.html The accompanying publication is here: http://www.journal.chemistrycentral.com/content/1/1/7 Cheers, Michael On Saturday 16 June 2007 07:33, Uzma Mahmood mehmoodchemist++gmail.com wrote: > Sent to CCL by: "Uzma Mahmood" [mehmoodchemist-.-gmail.com] > Hello, > > I build up a new homolog but i could not be able to identify or > characterize the binding site of this homolog, > > Anyone can suggest me about the free program or software that can > be used to explore the binding site of homologs. > > Regards > -- Michael Schmuker Computational Neurobiology FU Berlin, Germany http://userpage.fu-berlin.de/~schmuker/