From owner-chemistry@ccl.net Wed Dec 1 06:29:00 2010 From: "Wolf-D. Ihlenfeldt wdi===xemistry.com" To: CCL Subject: CCL: AW: Software for 2D structure determination from empirical formulas Message-Id: <-43248-101130192740-28933-Hn8UzV3N3uiBa2JvLbsOYA:server.ccl.net> X-Original-From: "Wolf-D. Ihlenfeldt" Content-Language: de Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="iso-8859-1" Date: Wed, 1 Dec 2010 01:27:33 +0100 MIME-Version: 1.0 Sent to CCL by: "Wolf-D. Ihlenfeldt" [wdi]_[xemistry.com] Molgen (http://www.molgen.de/) > -----Ursprüngliche Nachricht----- > Von: owner-chemistry+wdi==xemistry.com%%ccl.net [mailto:owner- > chemistry+wdi==xemistry.com%%ccl.net] Im Auftrag von Aurora E Clark > auclark-x-wsu.edu > Gesendet: Dienstag, 30. November 2010 20:18 > An: Ihlenfeldt, Wolf D > Betreff: CCL: Software for 2D structure determination from empirical > formulas > > > Sent to CCL by: "Aurora E Clark" [auclark]![wsu.edu] > Hello CCl'ers; > > I am interested to know if there is any available software that if > given an empirical formula, can output > all potential molecular formulas (2D connectivities) that conform to > chemical rules regarding bonding > and valence? > > Thank you; > Aurora> To recover the email address of the author of the message, please > change From owner-chemistry@ccl.net Wed Dec 1 11:51:01 2010 From: "Sanjay Bharathwaj computationalchemist()gmail.com" To: CCL Subject: CCL: Periodic System - semi empirical methods Message-Id: <-43249-101201114843-26711-vayRbmlatS9mjA8q/njIMQ^server.ccl.net> X-Original-From: Sanjay Bharathwaj Content-Type: multipart/alternative; boundary=0016e646504e93fd9004965c138c Date: Wed, 1 Dec 2010 17:48:36 +0100 MIME-Version: 1.0 Sent to CCL by: Sanjay Bharathwaj [computationalchemist]![gmail.com] --0016e646504e93fd9004965c138c Content-Type: text/plain; charset=ISO-8859-1 Dear Friends, I would like to know about the programmes that can handle periodic boundary conditions using semi empirical methods. I know MOPAC2009 could do that, but i find it difficult to find the documentation. In this regards, could any one help me to find something similar if available for free. -- Regards, Dr. Sanjay Bharathwaj Kumar, Dharmendra Institute of Technology, India. --0016e646504e93fd9004965c138c Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Dear Friends,

I would like to know about the=A0programme= s=A0that can handle periodic boundary
conditions using semi empir= ical methods.

I know MOPAC2009 could do that, but = i find it difficult to find the documentation.
In this regards, could any one help me to find something similar if av= ailable for free.


--
Regards,Dr. Sanjay Bharathwaj Kumar,
Dharmendra Institute of Technology,
India.
--0016e646504e93fd9004965c138c-- From owner-chemistry@ccl.net Wed Dec 1 12:25:01 2010 From: "Benny E Arney chm_bea*|*shsu.edu" To: CCL Subject: CCL:G: problem about casscf calculation Message-Id: <-43250-101201083055-27746-hzIxGyDCgf9yOJov+7Aikw=server.ccl.net> X-Original-From: "Benny E Arney" Date: Wed, 1 Dec 2010 08:30:51 -0500 Sent to CCL by: "Benny E Arney" [chm_bea|a|shsu.edu] Dear Zijun, The memory limit set in the link 0 section is too small. The %mem should be set to at least 5000MW (or 40GB) to allocate sufficient memory to cover the "Need" amount in your output. Good Luck. Benny > "Zijun Yu zjyu.:.lamar.colostate.edu" wrote: > > Sent to CCL by: "Zijun Yu" [zjyu||lamar.colostate.edu] > Hi All, > I perform a CASSCF(14,11) calculation to serach the conical intersection. > My input file is as below: > > %chk=NM.chk > %mem=4000MB . > Core=46912516321296 Need=4476969654 GauSpace=46912516321296 MaxMem=524288000 Avail=524288000. > Error termination via Lnk1e in /usr/apps/chemistry/gaussian/g03/g03/l510.exe at Tue Nov 30 12:43:52 2010. > Job cpu time: 0 days 0 hours 0 minutes 14.6 seconds. > File lengths (MBytes): RWF= 43 Int= 0 D2E= 0 Chk= 10 Scr= 1 > > Does it mean that the mem is not eough? Or how much mem I should allocate? > Thanks a lot > Zijun Yu > Department of chemistry > Colorado State university > Fort Collins, CO > > From owner-chemistry@ccl.net Wed Dec 1 13:00:00 2010 From: "Fatemeh Moosavi fatemeh.moosavi/./gmail.com" To: CCL Subject: CCL:G: keyword GEN for iodide anion Message-Id: <-43251-101201120220-13825-KXYDU3V9yG1JUuTkZ9qiKQ*o*server.ccl.net> X-Original-From: "Fatemeh Moosavi" Date: Wed, 1 Dec 2010 12:02:15 -0500 Sent to CCL by: "Fatemeh Moosavi" [fatemeh.moosavi[*]gmail.com] Deal all I have run the optimization job for a series of imidazolium based ionic liquids having iodide as anion. Since the basis set 6-311g** cannot be applied to I, I had to use the gen keyword with basis set extra input. Now, I need to run the same job for anion I (I-). However, there is the problem and I cannot solve it. In the output, I get this massage: Last state="Top" TCursr= 879 LCursr= 0 Error reading general basis specification. Error termination via Lnk1e in C:\G03W\l301.exe at Sun Nov 14 22:47:10 2010. Job cpu time: 0 days 0 hours 0 minutes 5.0 seconds. File lengths (MBytes): RWF= 11 Int= 0 D2E= 0 Chk= 1 Scr= 1 My input file is: %chk=Ig.chk %mem=6MW # b3lyp/gen opt freq Title Card Required -1 1 I 1 **** I 0 S 5 1.00 444750.0000000 0.0008900 66127.0000000 0.0069400 14815.0000000 0.0360900 4144.9000000 0.1356800 1361.2000000 0.3387800 S 2 1.00 508.4400000 0.4365900 209.5900000 0.1837500 S 1 1.00 81.9590000 1.0000000 S 1 1.00 36.8050000 1.0000000 S 1 1.00 13.4950000 1.0000000 S 1 1.00 6.8859000 1.0000000 S 1 1.00 2.5520000 1.0000000 S 1 1.00 1.2088000 1.0000000 S 1 1.00 0.2734000 1.0000000 S 1 1.00 0.1009000 1.0000000 P 4 1.00 2953.6000000 0.0122100 712.6100000 0.0858700 236.7100000 0.2949300 92.6310000 0.4784900 P 1 1.00 39.7320000 1.0000000 P 1 1.00 17.2730000 1.0000000 P 1 1.00 7.9570000 1.0000000 P 1 1.00 3.1529000 1.0000000 P 1 1.00 1.3328000 1.0000000 P 1 1.00 0.4947000 1.0000000 P 1 1.00 0.2160000 1.0000000 P 1 1.00 0.0829300 1.0000000 D 3 1.00 261.9500000 0.0314400 76.7340000 0.1902800 27.5510000 0.4724700 D 1 1.00 10.6060000 1.0000000 D 1 1.00 3.4217000 1.0000000 D 1 1.00 1.1370000 1.0000000 D 1 1.00 0.3020000 1.0000000 **** Would any one please advise me to be able run this job successfully? Great appreciation for the suggestions and thanks in advance Best regards F. Moosavi PhD student in Physical Chemistry Department of Chemistry Shiraz University Shiraz, 71454 Iran fatemeh.moosavi-x-gmail.com From owner-chemistry@ccl.net Wed Dec 1 13:35:00 2010 From: "David Livingstone davel^_^chemquestuk.com" To: CCL Subject: CCL: Randomisation (and model performance checks) Message-Id: <-43252-101201094703-11707-pMUmdF+K05594+/FXDvQWw[-]server.ccl.net> X-Original-From: "David Livingstone" Content-type: Multipart/Alternative; boundary="Alt-Boundary-31802.106237570" Date: Wed, 01 Dec 2010 14:46:50 -0000 MIME-Version: 1.0 Sent to CCL by: "David Livingstone" [davel a chemquestuk.com] --Alt-Boundary-31802.106237570 Content-type: text/plain; charset=US-ASCII Content-transfer-encoding: 7BIT Content-description: Mail message body Sorry about the delay in posting this comment - my first attempt seems to have disappeared somewhere! Yvonne nicely explained how to do Y scrambling and what it means (a check for chance effects) but there are more things to do when assessing models. Cross-validation (leave-one-out or leave-many-out) gives some measure of fitting performance but not prediction. Model Applicability Domain (AD) gives some idea of how well an individual prediction can be expected to perform. Division into sets gives some general measures of modelling performance. I recently updated a handbook of data modelling (A Practical Guide to Scientific Data Analysis, Wiley, Nov. 2009) which covers some of these topics and also shows how to use a lot of multivariate methods. Check out my website for contents (www.chemquestuk.com) and the Wiley website for excerpts or to order! (http://eu.wiley.com/WileyCDA/WileyTitle/productCd- 0470851538,descCd-tableOfContents.html). Cheers, Dave. -- D.J. Livingstone ChemQuest Delamere House, 1 Royal Crescent, Sandown. Isle of Wight UK PO36 8LZ Phone: +44 (0)1983 406832 e-mail davel^chemquestuk.com www.chemquestuk.com ------------------------------------------------------------------ --Alt-Boundary-31802.106237570 Content-type: text/html; charset=US-ASCII Content-transfer-encoding: 7BIT Content-description: Mail message body
Sorry about the delay in posting this comment - my first attempt seems to have disappeared somewhere!

Yvonne nicely explained how to do Y scrambling and what it means (a check
for chance effects) but there are more things to do when assessing models.

Cross-validation (leave-one-out or leave-many-out) gives some measure of
fitting performance but not prediction. Model Applicability Domain (AD)
gives some idea of how well an individual prediction can be expected to
perform. Division into sets gives some general measures of modelling
performance.

I recently updated a handbook of data modelling (A Practical Guide to
Scientific Data Analysis, Wiley, Nov. 2009) which covers some of these
topics and also shows how to use a lot of multivariate methods. Check out
my website for contents (www.chemquestuk.com) and the Wiley website for
excerpts or to order! (http://eu.wiley.com/WileyCDA/WileyTitle/productCd-
0470851538,descCd-tableOfContents.html).

Cheers,

 Dave.


--
D.J. Livingstone                ChemQuest
                       Delamere House, 1 Royal Crescent,
                       Sandown. Isle of Wight UK PO36 8LZ

Phone: +44 (0)1983 406832
e-mail davel^chemquestuk.com     www.chemquestuk.com
------------------------------------------------------------------
  
--Alt-Boundary-31802.106237570-- From owner-chemistry@ccl.net Wed Dec 1 14:10:00 2010 From: "Victor Rosas Garcia rosas.victor|-|gmail.com" To: CCL Subject: CCL: Periodic System - semi empirical methods Message-Id: <-43253-101201130820-22651-Qb7itTntkoTOUqQkH/hMxg _ server.ccl.net> X-Original-From: Victor Rosas Garcia Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset=ISO-8859-1 Date: Wed, 1 Dec 2010 12:08:11 -0600 MIME-Version: 1.0 Sent to CCL by: Victor Rosas Garcia [rosas.victor_-_gmail.com] The manual is always online at: http://www.openmopac.net/manual/index.html look at the "Examples" section for how to build a data set for solid state calculations. Hope this helps Victor 2010/12/1 Sanjay Bharathwaj computationalchemist()gmail.com : > Dear Friends, > I would like to know about the programmes that can handle periodic boundary > conditions using semi empirical methods. > I know MOPAC2009 could do that, but i find it difficult to find the > documentation. > In this regards, could any one help me to find something similar if > available for free. > > -- > Regards, > Dr. Sanjay Bharathwaj Kumar, > Dharmendra Institute of Technology, > India. > From owner-chemistry@ccl.net Wed Dec 1 15:06:00 2010 From: "Abu Asaduzzaman a.asaduzzaman##gmail.com" To: CCL Subject: CCL:G: keyword GEN for iodide anion Message-Id: <-43254-101201134143-24896-SlKByiMc6leJoLdjapfFEQ,server.ccl.net> X-Original-From: Abu Asaduzzaman Content-Type: multipart/alternative; boundary=000e0cd30afea62c0a04965da7ad Date: Wed, 1 Dec 2010 12:41:35 -0600 MIME-Version: 1.0 Sent to CCL by: Abu Asaduzzaman [a.asaduzzaman*gmail.com] --000e0cd30afea62c0a04965da7ad Content-Type: text/plain; charset=ISO-8859-1 Just remove the first four stars (****) after the geometry specification. On Wed, Dec 1, 2010 at 11:02 AM, Fatemeh Moosavi fatemeh.moosavi/./gmail.com wrote: > > Sent to CCL by: "Fatemeh Moosavi" [fatemeh.moosavi[*]gmail.com] > Deal all > I have run the optimization job for a series of imidazolium based ionic > liquids having iodide as anion. Since the basis set 6-311g** cannot be > applied to I, I had to use the gen keyword with basis set extra input. > Now, I need to run the same job for anion I (I-). However, there is the > problem and I cannot solve it. > In the output, I get this massage: > Last state="Top" > TCursr= 879 LCursr= 0 > Error reading general basis specification. > Error termination via Lnk1e in C:\G03W\l301.exe at Sun Nov 14 22:47:10 > 2010. > Job cpu time: 0 days 0 hours 0 minutes 5.0 seconds. > File lengths (MBytes): RWF= 11 Int= 0 D2E= 0 Chk= 1 > Scr= 1 > > My input file is: > %chk=Ig.chk > %mem=6MW > # b3lyp/gen opt freq > > Title Card Required > > -1 1 > I > > 1 > > **** > I 0 > S 5 1.00 > 444750.0000000 0.0008900 > 66127.0000000 0.0069400 > 14815.0000000 0.0360900 > 4144.9000000 0.1356800 > 1361.2000000 0.3387800 > S 2 1.00 > 508.4400000 0.4365900 > 209.5900000 0.1837500 > S 1 1.00 > 81.9590000 1.0000000 > S 1 1.00 > 36.8050000 1.0000000 > S 1 1.00 > 13.4950000 1.0000000 > S 1 1.00 > 6.8859000 1.0000000 > S 1 1.00 > 2.5520000 1.0000000 > S 1 1.00 > 1.2088000 1.0000000 > S 1 1.00 > 0.2734000 1.0000000 > S 1 1.00 > 0.1009000 1.0000000 > P 4 1.00 > 2953.6000000 0.0122100 > 712.6100000 0.0858700 > 236.7100000 0.2949300 > 92.6310000 0.4784900 > P 1 1.00 > 39.7320000 1.0000000 > P 1 1.00 > 17.2730000 1.0000000 > P 1 1.00 > 7.9570000 1.0000000 > P 1 1.00 > 3.1529000 1.0000000 > P 1 1.00 > 1.3328000 1.0000000 > P 1 1.00 > 0.4947000 1.0000000 > P 1 1.00 > 0.2160000 1.0000000 > P 1 1.00 > 0.0829300 1.0000000 > D 3 1.00 > 261.9500000 0.0314400 > 76.7340000 0.1902800 > 27.5510000 0.4724700 > D 1 1.00 > 10.6060000 1.0000000 > D 1 1.00 > 3.4217000 1.0000000 > D 1 1.00 > 1.1370000 1.0000000 > D 1 1.00 > 0.3020000 1.0000000 > **** > > Would any one please advise me to be able run this job successfully? > > Great appreciation for the suggestions and thanks in advance > > Best regards > F. Moosavi > PhD student in Physical Chemistry > Department of Chemistry > Shiraz University > Shiraz, 71454 > Iran > fatemeh.moosavi .. gmail.com> > > --000e0cd30afea62c0a04965da7ad Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Just remove the first four stars (****) after the geometry specification.
On Wed, Dec 1, 2010 at 11:02 AM, Fatemeh M= oosavi fatemeh.moosavi/./gmail.com <owner-chemistry/./c= cl.net> wrote:

Sent to CCL by: "Fatemeh =A0Moosavi" [fatemeh.moosavi[*]gmail.com]
Deal all
I have run the optimization job for a series of imidazolium based ionic liq= uids having iodide as anion. Since the basis set 6-311g** cannot be applied= to I, I had to use the gen keyword with basis set extra input.
Now, I need to run the same job for anion I (I-). However, there is the pro= blem and I cannot solve it.
In the output, I get this massage:
Last state=3D"Top"
=A0TCursr=3D =A0879 LCursr=3D =A0 =A00
=A0Error reading general basis specification.
=A0Error termination via Lnk1e in C:\G03W\l301.exe at Sun Nov 14 22:47:10 2= 010.
=A0Job cpu time: =A00 days =A00 hours =A00 minutes =A05.0 seconds.
=A0File lengths (MBytes): =A0RWF=3D =A0 =A0 11 Int=3D =A0 =A0 =A00 D2E=3D = =A0 =A0 =A00 Chk=3D =A0 =A0 =A01 Scr=3D =A0 =A0 =A01

My input file is:
%chk=3DIg.chk
%mem=3D6MW
# b3lyp/gen opt freq

Title Card Required

-1 1
=A0I

=A01

****
I =A0 =A0 0
S =A0 5 =A0 1.00
=A0444750.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0008900
=A066127.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0069400
=A014815.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0360900
=A0 4144.9000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1356800
=A0 1361.2000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.3387800
S =A0 2 =A0 1.00
=A0 =A0508.4400000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4365900
=A0 =A0209.5900000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1837500
S =A0 1 =A0 1.00
=A0 =A0 81.9590000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 36.8050000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 13.4950000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A06.8859000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A02.5520000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A01.2088000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A00.2734000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A00.1009000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 4 =A0 1.00
=A0 2953.6000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0122100
=A0 =A0712.6100000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0858700
=A0 =A0236.7100000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.2949300
=A0 =A0 92.6310000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4784900
P =A0 1 =A0 1.00
=A0 =A0 39.7320000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 17.2730000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A07.9570000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A03.1529000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A01.3328000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.4947000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.2160000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.0829300 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 3 =A0 1.00
=A0 =A0261.9500000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0314400
=A0 =A0 76.7340000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1902800
=A0 =A0 27.5510000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4724700
D =A0 1 =A0 1.00
=A0 =A0 10.6060000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A03.4217000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A01.1370000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A00.3020000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
****

Would any one please advise me to be able run this job successfully?

Great appreciation for the suggestions and thanks in advance

Best regards
F. Moosavi
PhD student in Physical Chemistry
Department of Chemistry
Shiraz University
Shiraz, 71454
Iran
fatemeh.moosavi .. gmail.com=



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--000e0cd30afea62c0a04965da7ad-- From owner-chemistry@ccl.net Wed Dec 1 23:07:00 2010 From: "nijamudheen a apchnijam:_:gmail.com" To: CCL Subject: CCL:G: keyword GEN for iodide anion Message-Id: <-43255-101201215654-23288-r8LTHNWz8Xpd1vUHsYy0Fw|,|server.ccl.net> X-Original-From: nijamudheen a Content-Type: multipart/alternative; boundary=0016e6d7e96875bca70496649240 Date: Thu, 2 Dec 2010 08:26:44 +0530 MIME-Version: 1.0 Sent to CCL by: nijamudheen a [apchnijam%x%gmail.com] --0016e6d7e96875bca70496649240 Content-Type: text/plain; charset=ISO-8859-1 Dear Fatemeh Moosavi, go through this link http://wanglab.bu.edu/g03guide/G03Guide/www.gaussian.com/g_ur/k_pseudo.htm See the sample input given below %chk=tfa_complex_int.chk %mem=200MW # opt freq rb3lyp/gen pseudo=read Title Card Required 0 1 Au 1.25702900 0.02768900 -0.48637900 N 2.23605600 1.79959000 -0.10315500 N -0.33935200 1.07801500 -1.25122900 N 0.33990400 -1.74142400 -1.00845800 N 2.91983800 -1.02228900 0.13359500 C 1.72912000 3.07752300 -0.31843800 C 3.49680700 1.92955300 0.46875700 C -0.95180700 -1.87081900 -1.50640800 C 0.85456100 -3.01923700 -0.82171800 C -0.47153600 2.46083600 -1.28324000 C -1.53006300 0.52672200 -1.71189700 C 4.07985000 -0.47340200 0.66909500 C 3.05810000 -2.40710600 0.14072700 C 2.71245700 4.04350000 0.12976400 H -0.84476200 2.08339900 2.22861300 C -0.15688500 -0.01816900 1.94211800 C -0.70368500 -1.24313700 2.58133900 H -0.00389300 -1.88455800 3.12311200 H -1.33811300 -1.79789600 1.87319900 C -5.19145000 0.05268300 0.08222700 F -6.38947500 -0.50583400 0.54700000 F -5.44430000 1.42040400 -0.12666300 F -5.00129300 -0.48199000 -1.21934100 C -3.97698100 -0.21356200 1.05691600 O -3.17409900 -1.13361800 0.68338400 O -3.97901600 0.54246000 2.08477800 H C N O F 0 6-31+g(d,p) **** Au 0 lanl2dz **** Au 0 lanl2dz On Thu, Dec 2, 2010 at 12:11 AM, Abu Asaduzzaman a.asaduzzaman##gmail.com < owner-chemistry*o*ccl.net> wrote: > Just remove the first four stars (****) after the geometry specification. > > On Wed, Dec 1, 2010 at 11:02 AM, Fatemeh Moosavi fatemeh.moosavi/./ > gmail.com wrote: > >> >> Sent to CCL by: "Fatemeh Moosavi" [fatemeh.moosavi[*]gmail.com] >> Deal all >> I have run the optimization job for a series of imidazolium based ionic >> liquids having iodide as anion. Since the basis set 6-311g** cannot be >> applied to I, I had to use the gen keyword with basis set extra input. >> Now, I need to run the same job for anion I (I-). However, there is the >> problem and I cannot solve it. >> In the output, I get this massage: >> Last state="Top" >> TCursr= 879 LCursr= 0 >> Error reading general basis specification. >> Error termination via Lnk1e in C:\G03W\l301.exe at Sun Nov 14 22:47:10 >> 2010. >> Job cpu time: 0 days 0 hours 0 minutes 5.0 seconds. >> File lengths (MBytes): RWF= 11 Int= 0 D2E= 0 Chk= 1 >> Scr= 1 >> >> My input file is: >> %chk=Ig.chk >> %mem=6MW >> # b3lyp/gen opt freq >> >> Title Card Required >> >> -1 1 >> I >> >> 1 >> >> **** >> I 0 >> S 5 1.00 >> 444750.0000000 0.0008900 >> 66127.0000000 0.0069400 >> 14815.0000000 0.0360900 >> 4144.9000000 0.1356800 >> 1361.2000000 0.3387800 >> S 2 1.00 >> 508.4400000 0.4365900 >> 209.5900000 0.1837500 >> S 1 1.00 >> 81.9590000 1.0000000 >> S 1 1.00 >> 36.8050000 1.0000000 >> S 1 1.00 >> 13.4950000 1.0000000 >> S 1 1.00 >> 6.8859000 1.0000000 >> S 1 1.00 >> 2.5520000 1.0000000 >> S 1 1.00 >> 1.2088000 1.0000000 >> S 1 1.00 >> 0.2734000 1.0000000 >> S 1 1.00 >> 0.1009000 1.0000000 >> P 4 1.00 >> 2953.6000000 0.0122100 >> 712.6100000 0.0858700 >> 236.7100000 0.2949300 >> 92.6310000 0.4784900 >> P 1 1.00 >> 39.7320000 1.0000000 >> P 1 1.00 >> 17.2730000 1.0000000 >> P 1 1.00 >> 7.9570000 1.0000000 >> P 1 1.00 >> 3.1529000 1.0000000 >> P 1 1.00 >> 1.3328000 1.0000000 >> P 1 1.00 >> 0.4947000 1.0000000 >> P 1 1.00 >> 0.2160000 1.0000000 >> P 1 1.00 >> 0.0829300 1.0000000 >> D 3 1.00 >> 261.9500000 0.0314400 >> 76.7340000 0.1902800 >> 27.5510000 0.4724700 >> D 1 1.00 >> 10.6060000 1.0000000 >> D 1 1.00 >> 3.4217000 1.0000000 >> D 1 1.00 >> 1.1370000 1.0000000 >> D 1 1.00 >> 0.3020000 1.0000000 >> **** >> >> Would any one please advise me to be able run this job successfully? >> >> Great appreciation for the suggestions and thanks in advance >> >> Best regards >> F. Moosavi >> PhD student in Physical Chemistry >> Department of Chemistry >> Shiraz University >> Shiraz, 71454 >> Iran >> fatemeh.moosavi .. gmail.com>> E-mail to subscribers: CHEMISTRY:+:ccl.net or use:>> >> E-mail to administrators: CHEMISTRY-REQUEST:+:ccl.net or use>> >> >> > -- With Best Regards, ************************************ NIJAMUDHEEN. A PROJECT FELLOW IISER, THIRUVANANTHAPURAM-695016 INDIA. PH: 91-9995642629 EMAIL: apchnijam*o*gmail.com ************************************* Every move is a treasure to be spent for the best reasons - Svetozar Gligoric --0016e6d7e96875bca70496649240 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable

Dear Fatemeh =A0Moosavi,

=A0go through this lin= k
=A0http://wanglab.bu.edu/g03guide/G03Guide/www.gaussian.co= m/g_ur/k_pseudo.htm
See the sample input given below


%chk=3Dtfa_complex_int.chk
%= mem=3D200MW
# opt freq rb3lyp/gen pseudo=3Dread

Title Card Requir= ed

0 1
=A0Au=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 1.25= 702900=A0=A0=A0 0.02768900=A0=A0 -0.48637900
=A0N=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 2.23605600=A0=A0=A0= 1.79959000=A0=A0 -0.10315500
=A0N=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0 -0.33935200=A0=A0=A0 1.07801500=A0=A0 -1.25122900
=A0N=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 0.33990400=A0=A0 -1.741424= 00=A0=A0 -1.00845800
=A0N=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0 2.91983800=A0=A0 -1.02228900=A0=A0=A0 0.13359500
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 1.72912000=A0=A0=A0= 3.07752300=A0=A0 -0.31843800
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0 3.49680700=A0=A0=A0 1.92955300=A0=A0=A0 0.46875700
=A0C= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -0.95180700=A0=A0 -1.87081= 900=A0=A0 -1.50640800
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0 0.85456100=A0=A0 -3.01923700=A0=A0 -0.82171800
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -0.47153600=A0=A0=A0 2= .46083600=A0=A0 -1.28324000
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0 -1.53006300=A0=A0=A0 0.52672200=A0=A0 -1.71189700
=A0C=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 4.07985000=A0=A0 -0.47340200= =A0=A0=A0 0.66909500
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0 3.05810000=A0=A0 -2.40710600=A0=A0=A0 0.14072700
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 2.71245700=A0=A0=A0= 4.04350000=A0=A0=A0 0.12976400
=A0H=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0 -0.84476200=A0=A0=A0 2.08339900=A0=A0=A0 2.22861300
=A0C=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -0.15688500=A0=A0 -0.01816900= =A0=A0=A0 1.94211800
=A0C=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0 -0.70368500=A0=A0 -1.24313700=A0=A0=A0 2.58133900
=A0H=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -0.00389300=A0=A0 -1.8= 8455800=A0=A0=A0 3.12311200
=A0H=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0 -1.33811300=A0=A0 -1.79789600=A0=A0=A0 1.87319900
=A0C=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -5.19145000=A0=A0=A0 0.05268300= =A0=A0=A0 0.08222700
=A0F=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0 -6.38947500=A0=A0 -0.50583400=A0=A0=A0 0.54700000
=A0F=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -5.44430000=A0=A0=A0 1= .42040400=A0=A0 -0.12666300
=A0F=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0 -5.00129300=A0=A0 -0.48199000=A0=A0 -1.21934100
=A0C=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -3.97698100=A0=A0 -0.21356200=A0=A0= =A0 1.05691600
=A0O=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -3.1= 7409900=A0=A0 -1.13361800=A0=A0=A0 0.68338400
=A0O=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 -3.97901600=A0=A0=A0 0= .54246000=A0=A0=A0 2.08477800

H C N O F 0
6-31+g(d,p)
****
= Au 0
lanl2dz
****

Au 0
lanl2dz


=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0


On Thu, = Dec 2, 2010 at 12:11 AM, Abu Asaduzzaman a.asaduzzaman##gmail.com <owner-chemistry*o*ccl.net> wrote:
Just remove the f= irst four stars (****) after the geometry specification.

On Wed, Dec 1, 2010 at 11:02 AM, Fatemeh = Moosavi fatemeh.moosavi/./gm= ail.com <owner-chemistry:+:ccl.net> wrote:
=

Sent to CCL by: "Fatemeh =A0Moosavi" [fatemeh.moosavi[*]gmail.com]
Deal all
I have run the optimization job for a series of imidazolium based ionic liq= uids having iodide as anion. Since the basis set 6-311g** cannot be applied= to I, I had to use the gen keyword with basis set extra input.
Now, I need to run the same job for anion I (I-). However, there is the pro= blem and I cannot solve it.
In the output, I get this massage:
Last state=3D"Top"
=A0TCursr=3D =A0879 LCursr=3D =A0 =A00
=A0Error reading general basis specification.
=A0Error termination via Lnk1e in C:\G03W\l301.exe at Sun Nov 14 22:47:10 2= 010.
=A0Job cpu time: =A00 days =A00 hours =A00 minutes =A05.0 seconds.
=A0File lengths (MBytes): =A0RWF=3D =A0 =A0 11 Int=3D =A0 =A0 =A00 D2E=3D = =A0 =A0 =A00 Chk=3D =A0 =A0 =A01 Scr=3D =A0 =A0 =A01

My input file is:
%chk=3DIg.chk
%mem=3D6MW
# b3lyp/gen opt freq

Title Card Required

-1 1
=A0I

=A01

****
I =A0 =A0 0
S =A0 5 =A0 1.00
=A0444750.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0008900
=A066127.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0069400
=A014815.0000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0360900
=A0 4144.9000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1356800
=A0 1361.2000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.3387800
S =A0 2 =A0 1.00
=A0 =A0508.4400000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4365900
=A0 =A0209.5900000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1837500
S =A0 1 =A0 1.00
=A0 =A0 81.9590000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 36.8050000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 13.4950000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A06.8859000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A02.5520000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A01.2088000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A00.2734000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
S =A0 1 =A0 1.00
=A0 =A0 =A00.1009000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 4 =A0 1.00
=A0 2953.6000000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0122100
=A0 =A0712.6100000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0858700
=A0 =A0236.7100000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.2949300
=A0 =A0 92.6310000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4784900
P =A0 1 =A0 1.00
=A0 =A0 39.7320000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 17.2730000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A07.9570000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A03.1529000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A01.3328000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.4947000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.2160000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
P =A0 1 =A0 1.00
=A0 =A0 =A00.0829300 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 3 =A0 1.00
=A0 =A0261.9500000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.0314400
=A0 =A0 76.7340000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.1902800
=A0 =A0 27.5510000 =A0 =A0 =A0 =A0 =A0 =A0 =A00.4724700
D =A0 1 =A0 1.00
=A0 =A0 10.6060000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A03.4217000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A01.1370000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
D =A0 1 =A0 1.00
=A0 =A0 =A00.3020000 =A0 =A0 =A0 =A0 =A0 =A0 =A01.0000000
****

Would any one please advise me to be able run this job successfully?

Great appreciation for the suggestions and thanks in advance

Best regards
F. Moosavi
PhD student in Physical Chemistry
Department of Chemistry
Shiraz University
Shiraz, 71454
Iran
fatemeh.moosavi .. gmail.com=



-=3D This is automatically added to each message by the mailing script =3D-




--
With B= est Regards,

************************************
NIJAMUDHEEN. A<= br>PROJECT FELLOW
IISER, THIRUVANANTHAPURAM-695016
INDIA.
PH: 91-9= 995642629
EMAIL: apchnijam*o*g= mail.com
*************************************

Every move is = a treasure to be spent for the best reasons - Svetozar Gligoric



--0016e6d7e96875bca70496649240--