From eloranta@voimax.voima.jkl.fi  Thu Feb  9 02:38:10 1995
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Date: Thu, 9 Feb 1995 08:38:55 +0200
From: Jussi Eloranta <eloranta@voimax.voima.jkl.fi>
Message-Id: <199502090638.IAA11193@voimax.voima.jkl.fi>
To: chemistry@ccl.net
Subject: Good comp. chem. handbook ?



Hi,

Can anyone suggest a good handbook for comp. chem. which has the basic
theory and apps. for HF + semiempirical stuff, DFT, and other related subjects.
It would be very nice to have "everything" in one book... ;-)


Thanks,

Jussi Eloranta

From troyer@celeste.ucsf.edu  Thu Feb  9 02:42:49 1995
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Subject: CCL: Re: POVRAY file?
To: chemistry@ccl.net
Date: Wed, 8 Feb 1995 22:41:38 -0800 (PST)
From: troyer@cgl.ucsf.edu (John M. Troyer)
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Forwarded message:
> From: "Michael R Rothwell" <michael@bch48.bch.ncsu.edu>

> I would also be interested in a PDB (or other format) - to - POVRAY converter.
> POVRAY is a cheap (free) fast raytracer available on almost any platform. It
> uses ASCII scripts as source files. It seems like a tool just waiting to be
> used for scientific visualization.

The UCSF Computer Graphics Lab distributes the program 'ribbonjr', which
can output 
	already-rendered SGI-format ribbon pictures
	SGI Open Inventor format ribbons for interactive viewing
	povray-format files of the ribbons
	rayshade-format files of the ribbons

along with their MidasPlus visualization program. MidasPlus also comes with
programs to render cpk, neon tubes, etc.  For more info, see
	http://cgl.ucsf.edu/cgl/ 
or email midasplus@cgl.ucsf.edu

I have no affiliation with cgl other than getting mail through their
machine, being two floors above them, harassing their programmers,
eating their babaganoush when they throw a reception, and 
happily using their programs.

john
troyer@cgl.ucsf.edu
http://www.cmpharm.ucsf.edu/~troyer/
Dept. Pharmaceutical Chemistry
University of California
San Francisco, CA 94143

From beck@work2.ch-cip.Uni-Koeln.DE  Thu Feb  9 03:38:15 1995
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From: beck@work2.ch-cip.Uni-Koeln.DE (Michael Beck tel. 4816)
Message-Id: <9502090749.AA18666@work2.ch-cip.Uni-Koeln.DE>
Subject: D20h-symmetry
To: CHEMISTRY@ccl.net (mailing list)
Date: Thu, 9 Feb 1995 08:49:22 +0100 (MET)
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Dear netters!

Does anybody know the character-table of the point-group D_20h?
Is there a public domain program available, which calculates 
the character-tables for arbitrary point-groups? 
Any reply will be helpful!

thanks in advance

M.E.Beck
Institut f"ur Physikalische Chemie II
Universit"at zu K"oln
Germany
beck@work2.ch-cip.uni-koeln.de

From javito@netcom.com  Thu Feb  9 05:38:13 1995
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From: javito@netcom.com (James Vito)
Message-Id: <199502091002.CAA13528@netcom13.netcom.com>
Subject: Molecule ball n stick visualization
To: chemistry@ccl.net
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I have uploaded a RayTrace Molecule Ball n Stick application to
chemistry.ccl.net.
The program is presently in the incoming directory.

ftp chemistry.ccl.net

The file is called jmr_bs.zip. This may be moved to 
molecule_ray_tracer_for_DOS directory at some later time.

Send a reply if you find this application helpful.
Maybe a pdb -> coo file conversion utility could be helpful.

Thanks.

Jim Vito
javito@netcom.com


From ivarm@boc.ic.ee  Thu Feb  9 05:43:56 1995
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From: "Ivar Martin" <ivarm@boc.ic.ee>
Date: Thu, 9 Feb 95 11:55:45 EST
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To: chemistry@ccl.net
Subject: conformer generator for MOPAC



Dear CCL people,

please suggest me a program which takes up the given geometry
(cartesian or internal) and generates a lot of conformers from that 
for the MOPAC input. It would be nice if the program works in UNIX.
(FORTRAN source would be excellent).

Thank you!
_______________________________
Dr. Ivar Martin
Department of Bioorganic Chemistry           tel: +372 2 526510
Institute of Chemistry                       fax: +372 2 536371
Akadeemia tee 15 EE0026                   e-mail: ivarm@boc.ic.ee
Tallinn, ESTONIA

From mbdtssg@afs.mcc.ac.uk  Thu Feb  9 06:38:08 1995
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From: mbdtssg <mbdtssg@afs.mcc.ac.uk>
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Subject: PDB to povray
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Hi,
  a recent thread has been asking about the conversion of
PDB files to povray input. Luckily, there is a utility available
which accomplishes this, source for which is available in the public 
domain by anonymous ftp from:

ftp.povray.org  in /pub/povray/incoming/utilities/pdb2pov_src.tar.Z

A number of options are available including CPK, VDW and ball & stick
as well as the ability to include sky(!) and tiled floors. I know that
Roger Sayle has povray exporting on his wish list for RASMOL - I do
not know if that is in the pipeline or some way off. Obviously a
preview of the molecular geometry is vital before submitting a very
costly rendering job. 

Hope this is of some use.

Steve Greatbanks ( steve.greatbanks@man.ac.uk )

From TOMKINSON_NP@fisonspharm.co.uk  Thu Feb  9 06:39:10 1995
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Date: Fri, 03 Feb 1995 15:39:00 +0000 (GMT)
From: Nicholas Tomkinson <TOMKINSON_NP@fisonspharm.co.uk>
Subject: charges schemes with CoMFA
To: chemistry%ccl.net%smtp%WPC%IOS@mr.fisonspharm.co.uk
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          This may be a FAQ but I didn't see anything remotely connected
          to this subject in the archive. If looking at small molecules
          (doing conformational analysis, CoMFA and the like) one needs
          to calculate point charges, what would be the preferred
          method. I want to be consistent throughout the ranges of
          molecules I might look at and time may be an issue so that
          rules out ab initio methods. I have seen papers (Aleman C. et
          al J. Comp. Chem. vol 14 1993 799-808 Besler et al J. Comp.
          Chem. 1990 vol 11 431-439 for example) that suggest that MNDO
          ESP charges show good agreement with ab initio. I can see 2
          disadvantages with this, PM3 seems to be more general than
          MNDO (I often use molecules with sulphur) and ESP seems
          dreadfully slow on my machine. So at the moment I am using PM3
          Mulliken charges. The CoMFA manual suggests that models are
          charge-scheme insensitive but doesnt give any examples. In
          addition, I am using a distance-dependant dielectric but I am
          not convinced this is best for small molecules. Is there
          anyone out there with experience in CoMFA and conformational
          searching in small molecules in particular who either has done
          or has references to validation of any particular charge/non-
          bonded scheme for this sort of study?
          As usual I will summarise if there is anything forthcoming.
          Thanks in advance
          Nick Tomkinson
          tomkinson_np@fisonspharm.co.uk



From san@mbu.iisc.ernet.in  Thu Feb  9 11:38:55 1995
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To: vigyan!chemistry@ccl.net
Subject: data analysis of protein crystal structure
Cc: vigyan!sangeeta@bioinfo.ernet.in


Hi! 
    About Ten or fifteen days back I posted a query regarding the
personal experiences of the people involved in the data analysis of
the crystal structures of biomolecules esp. proteins.  I am sorry to
state that my query evoked only two responses.
 one of the advices that came my way was about the selection of dataset.
I agree with the responder that this is a problem.
  I have found out that in PDB there is a directory called user_group
which contains different useful subdirectories.  One of them call
subset_list contains the list of PDB entries for proteins which
have been selected using some criteria.  one of the list is from
Jane Richardson's lab for different structural motifs. Another from
Chris Sander's lab lists the proteins with less than 30% sequence 
homology.  I hope tihs information is very useful to the people involved
in this area. 
           I renew my request to the people involved in data analysis
to come forward and share their experiences with one another.  I may
also be useful to the outsiders also as it can give them a glimpse
of current situation in this important field.  I am basically interested
in discussing how statistics can be exploited to shed some light on the
hidden principles  and properties of protein structures which are being
diposited in the databanks.  What all can we learn from data analysis?
I am sure the are many more protein motifs still left undiscovered in
these PDB files. There may be answers hidden in these files which could
tell us why protein secondary structure prediction is still inaccurate.
Only things we need to do is to be frank and informally discuss the
various problems one generally encounters when taking up such a project.
How best one can cope with it.  I will even welcome sharing of latest
litrature on the subjects amongst the people involved in such projects.
                           yours' cordially
                           sandeep kumar


From evi@gopher.chem.wayne.edu  Thu Feb  9 12:34:53 1995
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-------------------------------------------------------
PHYSICS COMPUTING '95  [for the latest info see http://aps.org]

June 5-8 1995 

Pittsburgh, Pennsylvania 

This conference will present some of the newest research 
results and developments in computational physics in a 
wide variety of subjects, including mini-symposia on 
lattice gauge theory, density functional methods, advances 
in computational materials science, computers in education, 
nonlinear dynamics and time series analysis.

The conference is sponsored by the American Physical Society 
Division of Computational Physics. 


ABSTRACTS 

Abstracts are due by March 10, 1995.

They can be mailed to 

APS Meetings Department/PC95 Abstracts 
One Physics Ellipse 
College Park, MD 20740-3844 

or submitted electronically. 
For information on electronic abstracts, send email to 

abs-info@aps.org.

Please include the word "info" in the text of your message.


LOCATION 

The Westin William Penn, a national landmark, is located in 
the heart of downtown Pittsburgh within one block of notable 
restaurants, tourist attractions, shopping centers and sporting events. 

The Westin William Penn features 595 guest rooms, a business center, 
a fitness center, two restaurants and two lounges, and valet parking. 
All of which are accessible to the handicapped in accordance with
the Americans with Disabilities Act. Each guest room features color 
television, radio, voice message service, alarm clock, hairdryers, 
and bath amenities. 


ACCOMMODATIONS 

The Westin William Penn 
530 William Penn Place
Pittsburgh, PA 15219

(412) 281-7100
Fax: (412) 553-5239

Single and Double Room Rates: $101.00/night
One bedroom suite: $190/night
Room Reservation DEADLINE: May 8, 1995


TRAVEL 

The Westin William Penn is only 25 minutes from the Pittsburgh 
International Airport, the hub airport facility for USAir. 

The Airport Limousine Bus Company provides transportation on a 
regular basis to and from the airport. 
The cost is $12.00 one way or $20.00 for a round trip. 
At the airport, follow signs to ground transportation. 

The shuttle schedule to the The Westin William Penn:

   Monday though Friday: Hourly 6:45 a.m. until 9:00 p.m. 
   Saturday and Sunday: Hourly 7:10 a.m. until 11:40 p.m 

The hotel is a few blocks from the Pittsburgh bus and train stations. 
A taxi is suggested as the simplest way to find it from either.


FOR FURTHER INFORMATION CONTACT... 

Lorilee Graul
Pittsburgh Supercomputing Center
4400 Fifth Ave.
Pittsburgh, PA 15213
graul@psc.edu
412-268-5131

or

APS Meetings Department
scanlan@aps.org
301-209-3288 (phone)
301-209-0866 (fax)


CONFIRMED SPEAKERS

Plenary speakers:

   Tomas Arias, MIT, Wavelet bases in the numerical solution of 
   coupled non-linear partial differential equations and applied 
   to the ab initio calculation of electronic structure 

   Roberto Car, Lausanne 

   David Landau, Georgia, Exploring Phase Transitions with Modern 
   Monte Carlo Techniques 

   Zaida Luthey-Schulten, NCSA, Protein structure prediction using 
                                optimized hamiltonians 

   Gregory Mcrae, MIT, Quantum Mechanics, Chemical Plants, and the Environment 

   Bruce Sherwood, Carnegie-Mellon, Using and developing educational software 

   Junko Shigemitsu, Ohio State, Using Numerical Simulations to Probe the 
                                 Standard Model of Particle Physics 

   Steve White, Irvine, The Density Matrix Renormalization Group 

   Gert Zumofen, ETH Zurich, Levy Statistics in Dynamical Systems 
                             and Related Phenomena 


MINI-SYMPOSIA

Contributed talks are welcome. 
See above for information on submitting abstracts. 
Note the firm March 10 deadline. 

NONLINEAR DYNAMICS MINI-SYMPOSIUM 

Coordinator: Dawn Meridith, meridith@aretha.unh.edu 

Invited talks: 

   Gert Zumofen, ETH Zurich, Levy Statistics in Dynamical Systems 
                             and Related Phenomena (plenary talk) 

   Tim Sauer, George Mason University, Reliability of computed 
                           trajectories in chaotic simulations 

   Kevin Short, University of New Hampshire, Computational issues 
                in unmasking chaotic communications 

   Emily Stone, Utah State University, Archetypical analysis of 
                              complex spatio-temporal data sets 

   James Theiler, Los Alamos National Lab, Hypothesis testing in 
   nonlinear time series using constrained-realization surrogate data 


MINI-SYMPOSIUM ON THE ROLE OF COMPUTATION IN THE UNDERGRADUATE
PHYSICS CURRICULUM 

Coordinators: Harvey Gould (hgould@black.clarku.edu), 
Bob Ehrlich, and Michael Strayer

Invited talks: 

   Amy Bug, Swarthmore, chair 

   Bruce Sherwood, Carnegie-Mellon, Using and developing 
                     educational software (plenary talk) 

   Wolfgang Christian, Davidson College 

   Jim Feagin, California State University, Fullerton 

   John Risley, North Carolina State University 

   Jan Tobochnik, Kalamazoo College 


LATTICE GAUGE THEORY MINI-SYMPOSIUM 

Coordinator: Claudio Rebbi, rebbi@pthind.bu.edu

Invited talks: 

   Junko Shigemitsu, Ohio State, Using Numerical Simulations 
   to Probe the Standard Model of Particle Physics (plenary talk)

   Aida El-Khadra 

   Steve Gottlieb 

   Vittorio Lubicz 

   Robert Mawhinney 


MINI-SYMPOSIA ON "DENSITY FUNCTIONAL METHODS" AND "ADVANCES IN
COMPUTATIONAL MATERIALS SCIENCE" 

Coordinator: Barry Klein, klein@bethe.ucdavis.edu


Physics Computing '95 program committee:

   Dan C. Barnes (Conference Chair) 
   Michael Creutz (Program Chair) 
   David Anderson 
   Jay Boris 
   Emily A. Carter 
   Richard DeVore 
   Gary Doolen 
   Robert Ehrlich 
   Roscoe Giles 
   Evelyn Goldfield 
   Harvey Gould 
   Barry M. Klein 
   Dawn C. Meredith 
   John Negele 
   Elaine Oran 
   Sok Pantelides 
   Karin M. Rabe 
   Claudio Rebbi 
   Peter Reynolds 
   Ralph Roskies 
   Michael R. Strayer 
   Robert Swendsen 






From cmartin@rainbow.uchicago.edu  Thu Feb  9 13:38:57 1995
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From: cmartin@rainbow.uchicago.edu (Charles Martin)
Message-Id: <9502091752.AA04643@rainbow.uchicago.edu>
Subject: ftp-able 2e-electron code
To: chemistry@ccl.net
Date: Thu, 9 Feb 1995 11:52:18 -0600 (CST)
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	I would also be interest in learning about a program
that can calculate two-electron, four-center integrals (between
arbitary s, p, and d-type gaussians).

	[The Columbus package has this capacity, however, the internal
subroutines which compute the 2-e integrals are cumbersome to
work worth bacause there is a lot of overhead associated with
setting up the inputs to the subroutines.  ]

	Charles Martin
	Theoretical Biophysics
	The Beckman Institute
	The University of Illinois at Urbana-Champaign



	


From elewars@alchemy.chem.utoronto.ca  Thu Feb  9 14:29:52 1995
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Date: Thu, 9 Feb 1995 12:55:57 -0500
From: "E. Lewars" <elewars@alchemy.chem.utoronto.ca>
Message-Id: <199502091755.MAA00842@alchemy.chem.utoronto.ca>
To: chemistry@ccl.net
Subject: HANDBOOK FOR COMPUTATIONAL CHEMISTRY


There is a new book (1995, ca. Feb) by Oxford University Press, entitled
*Computational Chemistry*; I don't recall the authors.  So far as I 
know this is the first book in ten years that seems (I haven't seen it
yet) to teach molecular mechanics, semiempirical and ab initio (DFT too ?)
methods.  If it does this adequately it will be, so far as I know, the only
book that one could use for an introductory course on comp chem.
Tim Clark's *A Handbook of Computational Chemistry*, MM, semiemp and
ab initio, is 1985, but still informative.
Herhre, Radom, Pople & Schleyer's *Ab Initio Molecular Orbital Theory is
still the bible of ab initio calc's, but not, by itsekf alone, a book for
learning how to do them and a ref when problems crop up.
Szabo & Ostlund's *Modern Quantum Chemistry* --a good book for nonbeginners.
A good introductory text, but well-oriented to Gaussian: *Wxploring 
Chemistry with Electronic Structure Methods* by Foresman and Frisch (contact
Gaussian Inc for that).
{Reply to query by Jussi Eloranta}
===
E. Lewars
===

From herbert.homeier@rchs1.chemie.uni-regensburg.de  Thu Feb  9 14:38:19 1995
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Date: Thu, 9 Feb 95 19:25:04 +0100
From: Herbert Homeier (t4720) <Herbert.Homeier@chemie.uni-regensburg.de>
Message-Id: <9502091825.AA14652@rchs1.chemie.uni-regensburg.de>
To: CHEMISTRY@ccl.net
Subject: Re: MGMS International Meeting


Dear CCLers,

Regarding the question on MGMS meetings, see below what I found in my 
list of conferences at
gopher://rchs1.uni-regensburg.de/1m/pub/KONFERENZEN

Best regards

Herbert Homeier

--------------------------------------------------------------
Dr. Herbert H. H. Homeier
Institut fuer Physikalische und Theoretische Chemie
Universitaet Regensburg
D-93040 Regensburg, Germany
Phone: +49-941-943 4720                FAX  : +49-941-943 2305
email: na.hhomeier@na-net.ornl.gov
<A HREF="http://rchs1.uni-regensburg.de/%7Ec5008/">HOMEPAGE</A>
---------------------------------------------------------------


The Molecular Graphics and Modelling Society (MGMS) - previously called the
MGS - exists to promote the interchange of knowledge in the various
sciences related to molecular modelling and graphics.The society was
founded 13 years ago and now has active "chapters" in the UK, US and
Germany. Regular meetings are held on topics related to the interests of
members and an annual international meeting is also held - this year in
Australia. Members of the society get a free personal subscription to the
Journal of Molecular Graphics and will also soon be able to get a heavily
discounted subscription to CDANews. Members also get reduced rate
registration fees at society meetings.

Membership rates are 30 pounds sterling (15 student) or $55 ($30 student).
If you would like to join the society or receive further information on
forthcoming meetings/events then please contact Caroline Myers
(myers@yorvic.york.ac.uk) at the University of York who administers the
worldwide membership scheme.

-------------------------------------------

The following is a brief list of forthcoming meetings:

10th-12th April '95, Leeds, UK, "Computational Aspects of Chemical
Libraries" (everything computational to do with combinatiorial libraries)
(contact johnson@mi.leeds.ac.uk)

27thAug-1stSept '95, Cairns, Australia. 14th Annual Internation Conference
of MGMS. (contact p.andrews@mailbox.uq.oz.au)

14th-15th Sept '95, University College Dublin, Eire, Joint meeting with
Biochem Soc. "Modelling Protein Structure and Function" (contact
ggrant@irlearn.ucd.ie)

12th-15th December '95, Braseneose College Oxford, "Quantum Mechanics"
(contact blaneyfe@smithkline.com)

--------------------------------------------

Contact names for different chapters:

USA - Dr Nicole Van Opdenbosch - nicole@tripos.com
UK - Dr Mike Hann - mmh1203@ggr.co.uk
- Dr Rod Hubbard - rod@yorvic.york.ac.uk (membership secretary)
Germany - Dr Tim Clark - clark@organik.uni-erlangen.de

If you have suggestions for meetings that you think could usefully
be organised under the banner of the MGMS then please contact one
of the above.

----------------------------------------------------------------
Mike Hann
Chairman of MGMS
c/o Computational Chemistry Group
Glaxo Research and Development
Greenford Rd
Greenford
Middlesex
UB6 0HE
England
mmh1203@ggr.co.uk
tel: 81-966-2413
fax: 81-966-2156

Dr Henry Rzepa, Department of Chemistry, Imperial College, LONDON SW7 2AY;
rzepa@ic.ac.uk via Eudora 2.1.1, Tel (44) 171 594 5774 or 594 5809.
Fax: (44) 171 594 5804. World-Wide-Web URL:
http://www.ch.ic.ac.uk/rzepa.html 

-------
On-line information available via http://www.ch.ic.ac.uk/watoc.html
using Mosaic or other www client.
To unsubscribe, send the message "UNSUBSCRIBE WATOC" to listserver@ic.ac.uk




From Karl.F.Moschner@urlus.sprint.com  Thu Feb  9 17:38:16 1995
Received: from sprintf.merit.edu  for Karl.F.Moschner@urlus.sprint.com
	by www.ccl.net (8.6.9/930601.1506) id RAA04589; Thu, 9 Feb 1995 17:07:27 -0500
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Date:  Thu, 9 Feb 1995 14:42:00 -0500
X400-Originator:  Karl.F.Moschner@urlus.sprint.com
X400-Recipients:  non-disclosure:;
X400-MTS-Identifier:  [/PRMD=LANGATE/ADMD=TELEMAIL/C=GB/;Thu Feb  9 14:42:42 199501]
X400-Content-Type:  P2-1984 (2)
Content-Identifier:  CCL:conformer ge
From: Karl.F.Moschner@urlus.sprint.com
Message-ID:  <"Thu Feb  9 14:42:42 199501*/I=F/G=Karl/S=Moschner/OU=4267EDUR/O=TMUS.URL/PRMD=LANGATE/ADMD=TELEMAIL/C=GB/"@MHS>
To: CHEMISTRY@ccl.net, ivarm@boc.ic.ee
Subject:  CCL:conformer generator for MOPAC


> please suggest me a program which takes up the given geometry (cartesian 
> or internal) and generates a lot of conformers from that for the MOPAC 
> input. It would be nice if the program works in UNIX. (FORTRAN source 
> would be excellent).
>
> Thank you!
> Dr. Ivar Martin

I have used the conformational search routines in the commercial package 
Sybyl to generate conformers and then submit the individual structures for 
single point calculations using MOPAC V6.0.  You could also use any other 
3rd party package for which they provide an interface or create your own 
using macros.  Unfortunately, they're unlikely to provide the source code.

 _______________________________________________________________________
/                                                                       \ 
| Comments are those of the author and not Unilever Research U. S.      |
|                                                                       |
| Karl F. Moschner, Ph. D.                                              | 
|                                                                       | 
| Unilever Research U. S.      e-mail: Karl.F.Moschner@urlus.sprint.com | 
| 45 River Road                Phone:  (201) 943-7100 x2629             | 
| Edgewater, NJ 07020          FAX:    (201) 943-5653                   | 
\_______________________________________________________________________/




From Karl.F.Moschner@urlus.sprint.com  Thu Feb  9 18:38:21 1995
Received: from sprintf.merit.edu  for Karl.F.Moschner@urlus.sprint.com
	by www.ccl.net (8.6.9/930601.1506) id RAA04602; Thu, 9 Feb 1995 17:08:33 -0500
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Date:  Thu, 9 Feb 1995 14:42:00 -0500
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X400-Content-Type:  P2-1984 (2)
Content-Identifier:  CCL:Books on Mix
From: Karl.F.Moschner@urlus.sprint.com
Message-ID:  <"Thu Feb  9 14:42:40 199504*/I=F/G=Karl/S=Moschner/OU=4267EDUR/O=TMUS.URL/PRMD=LANGATE/ADMD=TELEMAIL/C=GB/"@MHS>
To: CHEMISTRY@ccl.net, gl@mdy.univie.ac.at
Subject:  CCL:Books on Mix of DFT with MD, again


> Can anyone suggest a good handbook for comp. chem. which has the basic > 
theory and apps. for HF + semiempirical stuff, DFT, and other related 
> subjects. It would be very nice to have "everything" in one book... ;-) >
> Thanks,
> Jussi Eloranta

I keep these two within reach:

W. J. Hehre, L. Radom, P. v.R. Schleyer and J. A. Pople, "ab Initio 
Molecular Orbital Theory", John Wiley & Sons, New York, NY. 1986.  
ISBN 0-471-81241-2.

J. B. Foresman and Ae. Frisch, "Exploring Chemistry with Electronic 
Structure Methods:  A Guide to Using Gaussin", Gaussian Inc., Pittsburgh, 
PA. 1993. ISBN 0-9636769-0-3
Phone:  (412) 279-6700         e-mail:  info@gaussian.com 


and, if you're looking for a laboratory workbook, you might be interested 
in:

W. J. Hehre, L. D. Burke, A. J. Shusterman, and W. J. Pietro, "Experiments 
in Computational Organic Chemistry", Wavefunction Inc., Irvine, CA. 1993.
Phone:  (714) 955-2120         e-mail:  support@wavefun.com


But I haven't found a good "experimental" DFT book yet.  It may be too 
soon.

Karl
 _______________________________________________________________________
/                                                                       \ 
| Comments are those of the author and not Unilever Research U. S.      | 
|                                                                       | 
| Karl F. Moschner, Ph. D.                                              | 
|                                                                       | 
| Unilever Research U. S.      e-mail: Karl.F.Moschner@urlus.sprint.com | 
| 45 River Road                Phone:  (201) 943-7100 x2629             | 
| Edgewater, NJ 07020          FAX:    (201) 943-5653                   | 
\_______________________________________________________________________/


From pbays@saintmarys.edu  Thu Feb  9 20:38:25 1995
Received: from jade.saintmarys.edu  for pbays@saintmarys.edu
	by www.ccl.net (8.6.9/930601.1506) id UAA06307; Thu, 9 Feb 1995 20:05:32 -0500
Received: by jade.saintmarys.edu
	(1.37.109.11/16.2) id AA294668690; Thu, 9 Feb 1995 20:11:31 -0500
Date: Thu, 9 Feb 1995 20:11:30 -0500 (EST)
From: Phil Bays <pbays@saintmarys.edu>
To: Chemistry <chemistry@ccl.net>
Subject: Crystal Structures
Message-Id: <Pine.HPP.3.91.950209200906.29184B-100000@jade.saintmarys.edu>
Mime-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII


Does anyone know of a software package as reasonable cost which could be 
used to conctruct crystal structures and to examine space groups etc.  
This would be used for classroom work and could run on a Mac, PC, or SGI 
platform.  Send me a note if you know of something.

Phil Bays
Saint Mary's College
Notre Dame  IN  46556
pbays@saintmarys.edu


From WANG@IRBM.IT  Thu Feb  9 22:38:20 1995
Received: from V1.IRBM.IT  for WANG@IRBM.IT
	by www.ccl.net (8.6.9/930601.1506) id VAA07391; Thu, 9 Feb 1995 21:48:34 -0500
From: <WANG@IRBM.IT>
Date: Thu, 9 Feb 1995 22:50:47 +0100 (WET)
To: CHEMISTRY@ccl.net
CC: WANG@IRBM.IT
Message-Id: <950209225047.2419@IRBM.IT>
Subject: Code for Isosurfaces: Summary


Dear all,

I would like to thank those who responded my request, those donating 
their codes and the volunteers coordinating the ftp sites.  

Below are the replies(ordered by time) might be interesting to you too. 

Ciao,

Bingze Wang
e-mail:  wang@irbm.it
=============================================================================
My original message:

>Could someone tell me where I may find the source code for converting 
>numbers at 3-D grids into isosurfaces ?   We do have a commercial 
>package which can nicely do part of the job but not all.  Thank you
>for your information.

=============================================================================
From: "Joe Leonard" <jle@toyota.wavefun.com>
Date: Mon, 6 Feb 1995 08:38:45 -0800
To: <WANG@IRBM.IT>
Subject: Re: CCL:Code for Isosurfaces

The code you are looking for is called "marching cubes", and there might be
alternate methods available as well.  These codes take 3D grids and determine
the specified isosurface.  Marching cubes gets its name from the way it treats
the grid as layers of cubes (at least this is what I remember).

If you are looking at 3D grids surrounding molecules, Spartan can be used
to visualize the data.  If you are looking at arbitrary 3D functions,
you probably need a more generalized package.  If you have SGI computers,
did they come with Explorer?  If so, this kind of visualization system has
what you need...

Joe

----------------------------------------------------------------------
Joe Leonard
Wavefunction Inc.
18401 Von Karman, Suite 370
Irvine, CA  92715                       I am a professional...
714-955-2120                                    do not attempt this at home.
714-955-2118 fax
jle@wavefun.com

==========================================================================
From: mbdtscp <mbdtscp@afs.mcc.ac.uk>
Subject: Re: CCL:Code for Isosurfaces
To: WANG@IRBM.IT (WANG)
Date: Mon, 6 Feb 1995 17:59:07 +0000 (GMT)

Hi,

As far as I know, the papers you want to look at are in the computing
journals such as IEEE Computer Graphics & Applications, and are all
under the titles of "Marching Cube Algorithms". I've had a look at the
basic algortihms and as a result, have avoided the problem by using commercial
offerings such as the AVS module called "Isosurface" 

Good luck

Chris
________________________________________________________________________

                                Chris Parkinson.
                          Theoretical Chemistry Group
                            Department of Chemistry,
                       Victoria University of Manchester,
                                  Manchester.
                                    M13 9PL.

                    E-Mail: Christopher.Parkinson@man.ac.uk
                               Tel: 061-275-4686
                               Fax: 061-275-4734
______________________________________________________________________


==========================================================================
Date: Mon, 6 Feb 1995 13:56:22 -0500
From: Tom Pollard <pollard@chem.columbia.edu>
To: WANG@IRBM.IT
Subject: Re: Code for Isosurfaces

The freely available program PSI88 could be adapted to do this, if it
doesn't do it already.  This is Severance and Jorgensen's code to plot
constant-amplitude surfaces of molecular orbitals from ab initio
calculations.  As I use it, PSI88 consists of three programs: PSI1,
which calculates the wavefunction amplitude on a grid (given its
description as a sum of standard basis functions), PSICON, which
calculates contours for a specified amplitude level, and PSPLOT, which
generates the final plot as a PostScript file (the PSI88 package
includes source code for plot creation under GKS and on HP plotters, as
well.)

It ought to be easy to create, yourself, the 3-D data expected by
PSICON and thus use PSICON and PSPLOT to get isosurfaces for any 3D
data set.  The source code for PSI88 is available on the CompChemList
archives, but if you can't find it there I can always send you my own
copy.)

If you find a more direct solution to your problem, I'd appreciate
it if you could post a summary to the Comp Chem list.

Hope this helps,

Cheers,

Tom

-----------------------------------------------------------------------
W. Thomas Pollard				Department of Chemistry
pollard@cucbs.chem.columbia.edu			Columbia University
-----------------------------------------------------------------------

==========================================================================
Date: Mon, 6 Feb 1995 15:18:02 -0500
From: Pat Kerr <pkerr@cabsparc.larc.nasa.gov>
To: wang@irbm.it
Cc: pkerr@cabsparc.larc.nasa.gov

Bingze,

I received a forwarded copy of your mail requesting information about
viewing or making isosurfaces from 3-D grids.  I work in the Geometry
Lab at NASA/Langley Research Center where we are developing several
surface modeling and grid generation tools.  With more informatio, I
may be able to provide software to help you out.

Pat Kerr
p.a.kerr@larc.nasa.gov
804-864-5782
==========================================================================
From: Dongchul Lim <lim@rani.chem.yale.edu>
Full-Name: Dongchul Lim
Subject: Re: CCL:Code for Isosurfaces
To: WANG@IRBM.IT
Date: Mon, 6 Feb 95 15:20:01 EST

ISOVIS is available from zaphod.ncsa.uiuc.edu.
-D.Lim

==========================================================================

Date: Mon, 6 Feb 1995 17:59:00 -0800
To: <WANG@IRBM.IT>
From: WallyR@netcom.netcom.com (Walter E. Reiher III)
Subject: Re: CCL:Code for Isosurfaces

I'm interested in this subject, also.  Would you please send me a summary
of your results?  Thank you.

BTW, what commercial package are you referring to?  I believe that a
non-commercial MO plotting package, PSI88, is supposed to be able to
generate electron density isosurfaces, but it starts with a wavefunction
and basis functions.  Crystallographic packages, such as FRODO, do more
general 3D contouring, I believe beginning with 3D grids.

Wally

Walter E. Reiher III, Ph.D.                            WallyR@netcom.com
Consultant in Computational Chemistry
P.O. Box 61056                                        voice 408-720-0240
Sunnyvale, CA 94088                                     fax 408-720-0378

========================================================================
Date: Tue, 7 Feb 95 08:10:38 +0100
From: jpleiss@tebio1.biologie.uni-stuttgart.de (Juergen Pleiss)
To: <WANG@IRBM.IT>
Subject: Re:  CCL:Code for Isosurfaces

Could you please send me information on that topic - we are interested in
such a program, too.
Thank you for your support,
Juergen Pleiss


Dr.Juergen Pleiss                  
Institute of Technical Biochemistry 
University of Stuttgart   Email:jpleiss@tebio1.biologie.uni-stuttgart.de
Allmandring 31            Phone:(+49)-711-685-3198
D-70569 Stuttgart, Germany   Fax:  (+49)-711-685-3196
========================================================================
From: Pedro A M Vazquez <vazquez@iqm.unicamp.br>
Subject: CCL:Code for Isosurfaces
To: CHEMISTRY@ccl.net
Date: Mon, 6 Feb 1995 22:54:39 -0200 (EDT)

Hello

Look for Isovis and XDataSlice in ftp.ncsa.uiuc.edu:/Unix

Pedro
========================================================================
Date: Thu, 9 Feb 1995 12:44:12 +0500
From: gadre@unipune.ernet.in (Faculty)
To: wang@irbm.it

Dear Dr. Wang :
    WE do have a isosurface generator and corresponding
graphics visualization package which has many other
utilities too. This is available on PC486 svga as well as
HP 9000/715 platforms. Please let us know your interests
in buying it...........................Professor Shridhar R. Gadre
                                       8.2.1995.
========================================================================
=========     That's all and thanks   ==================================
========================================================================

From D.Winkler@chem.csiro.au  Thu Feb  9 23:38:22 1995
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Date: Fri, 10 Feb 95 15:01:36 EST
From: "Dr. Dave Winkler" <D.Winkler@chem.csiro.au>
Subject: International Molecular Design conference (second notice)
To: aschin-list@nuscc.nus.sg, chminf-l@iubvm.ucs.indiana.edu,
        chemistry@ccl.net, anchodd@tasman.cc.utas.edu.au, bri@mel.dbe.csiro.au,
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          M O L E C U L A R   D E S I G N   D O W N   U N D E R

                     AUGUST 27 - SEPTEMBER 1 1995

                       CAIRNS INTERNATIONAL HOTEL, 
                  CAIRNS, NORTH QUEENSLAND, AUSTRALIA

This meeting is the 14th Annual Conference of the Molecular Graphics and 
Modelling Society (MGMS) presented in 1995 in conjunction with the 12th 
Conference of the Medicinal and Agricultural Chemistry Division of the Royal 
Australian Chemical Institute (RACI). Note that the venue has changed from the 
earlier posting due to a larger than anticipate response.

SCIENTIFIC PROGRAM
------------------

The program consists of sessions covering five technology areas and five target 
areas:

Chemical Similarity  and Biological Diversity
---------------------------------------------
Keynote Speaker:   Dr. Jeffery Blaney, Chiron Corporation, USA

Macromolecular Assemblies: the Supermodels of Molecular Design
--------------------------------------------------------------
Keynote speaker:   Dr. Phoebe Stewart, UCLA, USA

Neural Nets and Fuzzy Sets
--------------------------
Keynote speakers:  Dr. David Livingston, Consultant, UK
                   Dr. Gerry Maggiora, Upjohn Pharmaceuticals, USA

Molecular Recognition
---------------------
Keynote speakers:  Dr. Barry Honig, Columbia University, USA
                   Dr. Regine Bohacek, Ciba-Geigy, USA

Molecular Dynamics:  Deciphering the Data
-----------------------------------------
Keynote Speaker:   Dr. David Osguthorpe, University of Bath, UK

Harnessing the Potential of Natural Products
--------------------------------------------
Keynote speaker:   Dr. Joe Baker, Australian Institute of Marine Science, 
                   Australia

The Future of Peptidomimetics
-----------------------------
Keynote speaker:   Prof. Garland Marshall, Washington University, USA

Glycoproteins and Glycobiology- New Wave Pharmaceuticals
--------------------------------------------------------
Keynote Speaker:   Dr. Peter Colman, Biomolecular Research Institute, Australia

Focus on Australian Biomolecular Design and Development- Medicinal Targets
--------------------------------------------------------------------------
Keynote Speaker:   Prof. Graham Johnston, University of Sydney, Australia

Focus on Australian Biomolecular Design and Development- Agricultural Targets
-----------------------------------------------------------------------------
Keynote Speaker:   Dr. George Holan, CSIRO Division of Chemicals and Polymers
                   Australia


CONFERENCE PROGRAM

All sessions and functions will be held at the Cairns International Hotel 
beginning with the Welcoming Cocktail Party on Sunday evening and concluding 
Friday lunchtime.  A Cruise to the Great Barrier Reef has been organized on 
Wednesday to be followed by a barbeque dinner in the evening.  The Conference 
Dinner will be held on Thursday evening.

The conference program includes oral and poster sessions.  Oral papers will be 
presented in plenary sessions during the day.  The Organizing Committee will 
select abstracts for oral presentation from the abstracts submitted with the 
registration form.  Poster presentations are a major component of the scientific 
program with poster sessions on Monday, Tuesday and Wednesday evenings.

INSTRUCTIONS FOR PREPARATION OF ABSTRACTS AND POSTERS

Abstracts must be prepared for all presentations, both oral and poster.  The 
original must reach the Conference Secretariat by May 15 for inclusion in the 
book of Abstracts that will be provided at the meeting.  Two (2) camera-ready 
hard copies of the abstract should also be provided in the following style:

-  printed on one side of A4 bond white paper
-  12pt Helvetica
-  3cm margin on all sides
-  title in upper case
-  author(s) (full name) with presenting author indicated by *
-  the addresses of the authors
-  a single blank line should follow after the title, the authors' list and 
   authors' addresses
-  full abstract in single spaced text


All abstracts for oral presentation will be refereed.  Successful presenters 
will be notified by June 15.  Abstracts received after the May 15 deadline will 
not be considered.

ADVICE TO SPEAKERS

Audiovisual facilities will include dual standard 35mm slide projection, video 
and computer projection, overhead transparency projections and white boards. 
Speakers with other needs should contact the Conference Secretariat as soon as 
possible.

POSTERS

Posters will be presented on vertical, velcro-compatible panels 1 metre wide by 
2.4 metres high.  Posters may be viewed during the day but presenters will 
attend their poster during the assigned poster sessions on Monday, Tuesday and 
Wednesday evenings.

REGISTRATION

A registration form follows.  Please complete the form and return  along with 
your abstract and appropriate payment to the Conference Secretariat by May 15.

Full registration entitles participants to the book of Abstracts, attendance at 
all sessions including the Sunday Welcoming Cocktail Party.  The Wednesday 
evening BBQ and all morning and afternoon teas are also included.  There are no 
single day registrations.

Registration Fees  (all prices are in Australian dollars: $1 = US$0.75)
-----------------

Members (MGMS and RACI)                    $440
Non-members                                $520
Students                                   $220
Late fee after May 15                      $80
Conference dinner (Thursday)               $50

Students are advised that they must complete the student section of the 
registration form to qualify for student rate.  No registration fee will be 
charged for accompanying persons.

STUDENT BURSARIES

The MGMS provides financial assistance to students.  Plese contact Dr. Mike 
Hann, Glaxo Research and Development (mmh1203@ggr.co.uk) before March 30 for 
details.

The RACI is providing assistance for Australian students which includes free 
accomodation in Cairns and, if funds are available, some assistance with travel 
costs.  For further details contact Prof. Peter Andrews, Centre for Drug Design 
and Development, University of Queensland (p.andrews@mailbox.uq.oz.au).

CONFERENCE VENUE AND ACCOMODATION INFORMATION

Sessions will be held in the Grand Ballroon of the Cairns International Hotel 
and poster sessions will be in the exhibition area and foyer outside exhibition 
area.  A limited amount of accomodation has been reserved at this 5-star hotel 
for the conference.  Check in is from 3pm.

Cost:  $175 per room, per night (max 2 adults/room)

Block bookings have also been made at 4 other Cairns hotels:

Reef Plaza:       $115 per night, per room  (4 min walk to conference venue)

Rainbow palms:    $115 per night, per room  (20 min walk to conference venue)

Rainbow Inn:      $115 per night, per room  (20 min walk to conference venue)

Uptop Downunder:  $45 per night, per room (max 4 adults/room)  (10 min walk to 
                  conference venue)

The above accomodation prices are room only.

Delegates will allocated their choice of room on a first come first served 
basis.

This is the peak season in Cairns and there are extremely heavy demands on 
accomodation in the city.  Delegates are requested to pay a deposit by May 15 to 
secure accomodation.  The above rates are only for conference attendees and 
their partners and are only available if booked through the registration form.

TIMETABLE OF DEADLINES

Student bursary applications      30 March
Last day for early registration   15 May
Submission of abstracts           15 May
Last day for cancellations        30 July
Opening of conference             27 August

ADVICE FOR VISITORS

Average temperature in North Queensland in late August is 21 C.  Dress is 
usually light and casual.  Hats, sunglasses and 15+ sunscreen are strongly 
recommended for protection from the sun.

A valid passport with visa is required for entry into Australia by all visitors 
except New Zealanders.

A variety of tours are available for accompanying persons.

The official language of the conference is English.

----------------------------------------------------------------------------

                     R E G I S T R A T I O N   F O R M

1. DELEGATE NAME AND ADDRESS DETAILS

Name ____________________________________________________________________
      Surname                         Title   First name

Position _________________________________________________________________

Organization ______________________________________________________________

Postal Address ____________________________________________________________

               ____________________________________________________________
        
               ____________________________________________________________
               State/province     Postcode         Country

Telephone   Work __________________________  Home ________________________

Fax              __________________________  Email ________________________

Indicate membership         MGMS ____      RACI ____

Preferred name for badge ______________________  Surname: __________________

Name of accompanying person (if badge required) ____________________________

Special dietary requirements ________________________________________________

2. ACCOMODATION REQUIRED       __ YES       __ NO

Please indicate your choice of hotel and room type

Cairns Internat Hotel __  Reef Plaza __     Reef Inn __      Uptop Downunder __
  $175/room/night         $115/room/night   $115/room/night  $45/room/night

Max 2 adults/room except Uptop Downunder which is 4/room

Room type    SINGLE __     TWIN SHARE __    DOUBLE __   4 SHARE __

Sharing with (if applicable) ________________________________________________

Arrival date _______ Aug 1995      Estimated arrival time  ______________

Number of nights accomodation required _______  Estimated departure date _____

NOTE:  Rooms will not be held after 6pm on arrival date unless hotel advised

3.  ABSTRACTS

I wish to submit and abstract    __ YES    __ NO

I would be prepared to make an oral presentation if selected  __ YES   __ NO

Abstracts for all presentations should be submitted with this registration form

4. DELEGATE REGISTRATION

                     Registration    After 15 May

MGMS/RACI Members        $440            $520             $ ___________

Non-members              $520            $600             $ ___________

Students                 $220            $300             $ ___________

Accomodation deposit (rate for 1 night)                   $ ___________

Conference dinner (31 August)   _____ tickets @ $50       $ ___________

Reef Cruise (30 August)         _____ tickets @ $110      $ ___________

(I am/am not interested in an introductory dive/certified dive)

Extra tickets for accompanying persons only (free for registrants)

Welcoming cocktail party (27 August)  ____ tickets @ $25  $ ___________

Tropical BBQ (30 August)              ____ tickets @ $25  $ ___________

TOTAL PAYMENT ENCLOSED                                    $ ___________

Please note that registrants after 15 May may not be supplied with satchels and 
abstract books

Payment to be made in Australian dollars by cheque or money order  drawn on an 
Australian bank, PAYABLE TO:  "Molecular Design Down Under Conference"  and 
mailed to arrive at the following address by 15 May 1995

     Molecular Design Down Under Conference     Phone   +61 7 369 7866
     c/o Organizers Australia                   Fax     +61 7 367 1471
     PO Box 1237
     MILTON QLD AUSTRALIA  4064

Send email via Ruth Drinkwater, Centre for Drug Design and Development, 
University of Queensland (R.Drinkwater@mailbox.uq.oz.au)

5.  STUDENT REGISTRATION

I certify I am currently enrolled as a full-time student at ___________________

_______________________________ for a _________________________ degree course.

                                         Signature     ________________________

Supervisor's information

Name    ___________________________________________________

Address ___________________________________________________

        ___________________________________________________

Phone   _____________________________  Fax ___________________________

Email   _____________________________

                                  Supervisor's signature ______________________

The student accomodation to be provided by the RACI will be at "Uptop Downunder"

-------------------------------------------------------------------------------

          

Cheers,

Dave
__________________________________________________________________________

   Dr. David A. Winkler                        Voice: 61-3-542-2244      
   Principal Research Scientist                Fax:   61-3-543-8160      
   CSIRO Division of Chemicals and Polymers
   Private Bag 10       
   Clayton, Australia.

   "Life is what happens to you while you're making other plans"


