Subject: chirality problem after MD

From: [email-masked] (Pornthep Sompornpisut)
Date: Wed, 22 Mar 1995 21:35:59 +0100 (NFT)

Dear Amber-users

Does anyone have or used to have a chirality problem of ALPHA-C in the first
residue of the proteins after refining by the restraint energy minimized
or restraint molecular dynamics (I am using the program AMBER v4.0)?

My problem is that the first N-terminal residue of the calculated structure
is D-aminoacid, even the residue started from L- . 

Any opinions are welcome.

Thank you

Pornthep