From h9290218@hkusub.hku.hk  Thu May 11 06:20:24 1995
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From: h9290218@hkusub.hku.hk (Danny Yau)
Message-Id: <9505111011.AA27676@hkusua.hku.hk>
Subject: MD program of binary hard sphere mixture
To: chemistry@ccl.net
Date: Thu, 11 May 1995 18:11:30 +0800 (HKT)
Cc: h9290218@hkusub.hku.hk (Danny Yau)
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Dear Netters:

	I am interested in studying the molecular dynamics of binary hard sphere
mixtures. However, in Allen's text book, it just has a program of MD for
pure component. Would anyone has ever studying this kind of mixtures?
Would you please send me the program of MD binary hard sphere mixture
for me to refer? It would be much appreciated.

	Thanks in advanced for any response.

-- 
Danny Yau                       email: h9290218@hkuxa.hku.hk   
Department of chemistry,           or  h9290218@hkusub.hku.hk
The university of Hong Kong.		

From E.WEZENBEEK@elsevier.nl  Thu May 11 07:05:24 1995
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Content-Identifier: THEOCHEM
Alternate-Recipient: Allowed
Message-ID: <G0000370311MAY199512273402*@MHS>
To: chemistry@ccl.net
Subject:  THEOCHEM


Dear members of the CCL list,

I would like to draw your attention to some recent changes we
established for THEOCHEM, our computational chemistry journal:

- A completely new team of Editors was appointed:
    Professor Imre Csizmadia, University of Toronto
    Professor Clifford Dykstra, IUPUI, Indianapolis
    Professor Ian Hillier, University of Manchester
    Professor Jean-Louis Rivail, Univerisit Nancy I

- The aims, scope and cover design have been updated. THEOCHEM     
  now serves the whole area of theory and modelling in chemistry.

- A reduction in publication time to six months. The new editors
  are trying to have papers refereed within 2 months, and by the  
  end of 1995 Elsevier production time will be four months.

It is our goal to let THEOCHEM become your key resource for
obtaining information as well as the vehicle for publication of
your best work.

If you have questions on THEOCHEM, I will be able to give you
more information on all of the above items.


Elsevier plays an active role in the development of electronic
products. We also have the technology to deliver (information
related to) THEOCHEM in an electronic fashion. However, first we
need to know what the market needs. Therefore we want to
establish a direct link with researchers in the area by providing
via email, for free, the Table of Contents of THEOCHEM issues
before publication. If you are interested in participating in
this project, please send me your email address.


With kind regards,


Egbert van Wezenbeek
Publishing Editor

-----------------------------------------------------------------
Dr. Egbert M. van Wezenbeek
Publishing Editor
Elsevier Science BV
Chemistry & Chemical Engineering Department
P.O. Box 330                 	 
1000 AH Amsterdam          	
The Netherlands         	Phone:	(+31-20) 485 2475
e.wezenbeek@elsevier.nl		Fax:	(+31-20) 485 2845

Elsevier WWW server:        	http://www.elsevier.nl
Elsevier Gopher server:      	gopher.elsevier.nl
-----------------------------------------------------------------


From valery-g@dcl.co.il  Thu May 11 08:20:30 1995
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	(8.6.12/actcom-0.1) id PAA27431;
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	id OAA12572; Thu, 11 May 1995 14:44:20 +0300
Date: Thu, 11 May 1995 14:44:20 +0300
From: valery-g@dcl.co.il (Dr. Golender Valery)
Message-Id: <199505111144.OAA12572@indigo2.dcl.co.il>
To: chemistry@ccl.net
Subject: RMS Fits For Structures That Have Symmetry
Cc: boris@dcl.co.il, valery@dcl.co.il, valery@actcom.co.il,
        gregory@wucmd.wustl.edu, graham@sentex.net, given@tiber.nist.gov


Jim Given recently asked about calculation of 'RMS Fits For 
Structures That Have Symmetries'. It fact the same question was 
discussed on CCL in February when Dongchul Lim asked how one 
can tell if two conformers are the same. But I see from postings of 
Gregory Nikiforovich (Hi!) and Graham Hurst  that discussion is open 
again. I already mentioned then that we developed a conformer 
clustering algorithm that takes into account molecular symmetry. This 
algorithm generates chemical graph automorphisms (atom mappings 
that preserve chemical structure) using an efficient algorithm based on 
graph potential method. This method generates very sensitive graph 
invariants that allow significantly reduce the number of possible 
permutations from the worst case of N! (as mentioned by Graham 
Hurst). For the graph potential method description see paper
Golender V.E., Drboglav V.V., Rosenblit A.B. Graph potentials 
method and its applications for  chemical information processing. 
J.Chem. Inform. Comput. Sci., 1981, v.21., No.4, 196-204
and book
Golender V.E, Rozenblit A.B. Logical and Combinatorial Algorithms 
for Drug Design. Research Studies Press: UK (1983).
Conformer clustering algorithm that incorporates checking of 
molecular symmetry is a part of Apex-3D system for drug design 
marketed by Biosym Technologies. The algorithm allows also 
selection of  atoms only from "important" groups, as Gregory 
Nikiforovich wants to see.

After my previous posting I got a number of requests for additional 
information about the algorithm. In order to make the information 
publicly available I will put it on WWW:

http://www.dcl.co.il/conf_clust.html

I will be able also to provide additional information on request.

Sincerely,


Valery Golender, Ph.D.
Director, Chemical Software
DCL Systems International Ltd
20 Galgalei Haplada St. POB 544
Herzlia 46105 ISRAEL
Tel: + 972-9-584-684
Fax: + 972-9-543-917
E-mail: valery-g@dcl.co.il, valery@actcom.co.il

From ipcakc@vigyan.iisc.ernet.in  Thu May 11 08:35:28 1995
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To: CHEMISTRY@ccl.net
Subject: Density of States calculation
Date: 11 May 95 17:56:59 EST (Thu)
Message-Id: <9505111756.AA19017@vigyan.iisc.ernet.in>


Dear netters

   I would do some desity of states calculation on amorphous graphite
and amorphous diamond.  could anyone provide any reference in this
regard.
Thanking you in advance.

Sumathy

From bouyer@ext.jussieu.fr  Thu May 11 08:50:28 1995
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Date: Thu, 11 May 1995 14:49:25 +0100
To: chemistry@ccl.net
From: bouyer@ext.jussieu.fr (Frederic BOUYER)
Subject: CCL : ab-initio molecular dynamic software


Dear Netters,

I would appreciate if there is a possibility to obtain public or academic
(eventually commercial) ab-initio molecular dynamic software for studying
properties in liquids (ab-initio or DFT based methodology).

Thank you in advance for any response.

Frederic Bouyer
Lab. d'Electrochimie et de Chimie Analytique, Paris, France
bouyer@ext.jussieu.fr
http://alcyone.enscp.jussieu.fr/



From howard_broughton@Merck.Com  Thu May 11 11:20:37 1995
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	by www.ccl.net (8.6.10/930601.1506) id LAA10025; Thu, 11 May 1995 11:08:54 -0400
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Message-Id: <9505111514.AA18913@igw.merck.com>
Date: Thu, 11 May 1995 11:01:21 EST
From: howard_broughton@merck.com (Howard Broughton)
Subject: SUMMARY Helical Wheel/string-of-beads programs
To: CHEMISTRY@ccl.net
Content-Type: TEXT/PLAIN


My original post requesting information on programs that can draw helical wheels
and/or string-of-beads representations of proteins promised a summary, and in
addition I have had a number of e-mails requesting one.

One reply suggested RASMOL but although this produces a number of 
representations, at least the version I have seen was not able to produce 
these particular cartoons.

Walter REIHER (WallyR@netcom.netcom.com) suggested the GCG package - this can 
do helical wheels.  I have had a look at the manual and software but can't find
the string-of-beads.

Jacques-Antoine DURET (jduret@ujf-grenoble.fr) has a pascal program under 
development for drawing helical wheels, and stated that anyone who wanted to 
help develop it should write to him.  His program is aimed especially at the
G-protein coupled receptors.

Wim VRANKEN (Wim.Vranken@rug.ac.be) had an answer from a similar query in a 
different newsgroup and suggested the program pSAAM from Tony Crofts at the
University of Illinois.  It's available on anonymous ftp from

nemo.life.uiuc.edu

The program draws (on a PC running WINDOWS) both helical wheels and string-of-
beads representations ; it appears to be sold at a "shareware" price with a
more fully-functional version available commercially at extra cost.

If you want this program, you'll also need unzip and may need to get another
program from uiuc to make pSAAM run (see the files that you extract from 
psaam.zip).

Many thanks to everyone who replied.

Tel     :       +44 1279 440 500                Howard B. Broughton
Fax     :       +44 1279 440 390                Molecular Modelling
E-mail  :       Howard_Broughton@merck.com      Merck Sharp & Dohme
                                                Neuroscience Research Centre



From HRUSAK@jh-inst.cas.cz  Thu May 11 11:35:35 1995
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	id AA01344; Thu, 11 May 95 17:21:53 +0200
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    11 May 95 17:22:54 GMT+1
Received: from MAILQUEUE by BOB (Mercury 1.20); 11 May 95 17:22:23 GMT+1
From: "Dr. Jan Hrusak" <HRUSAK@jh-inst.cas.cz>
Organization:  Institute of Physical Chemistry
To: chemistry@ccl.net
Date:          Thu, 11 May 1995 17:22:15 +0100
Subject:       DFT basis set dependency
Return-Receipt-To: "Dr. Jan Hrusak" <HRUSAK@jh-inst.cas.cz>
Priority: normal
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Message-Id: <203A4755A9@bob223.jh-inst.cas.cz>


Hi all,

I just found a recent article on the comparison of different DFT 
schemes with respect to the basis set extetion.  It could by of particular 
interst to the broader community. Since it is published in   J. Comp. 
Chem. it may not be known to all. 
The reference is:

 R.H. Hertwig W. Koch J. Comp. Chem. 16(5), 1995 576

I found the conclusions made very interesting

Jan


----------------------------------------------------------------------------
Dr. Jan Hrusak                               ###############################
J. Heyrovsky Institute of Physical Chemistry ## MEMOR ESTO CONGREGATIONIS ##
Academy of Sciences of the Czech Republic    ##   TVAE QVAM POSSEDISTI    ##
Dolejskova 3, CZ-182 23 Prague 8             ##         AB INITIO         ##
Czech Republic                               ###############################
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Phone: (0042 2) 66 05 3436                    FAX: (0042 2) 858 2307
                     E-Mail: hrusak@jh-inst.cas.cz
----------------------------------------------------------------------------


From hcj@mazda.wavefun.com  Thu May 11 12:35:30 1995
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	by www.ccl.net (8.6.10/930601.1506) id MAA12510; Thu, 11 May 1995 12:34:16 -0400
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Date: Thu, 11 May 95 09:33:41 -0700
From: hcj@mazda.wavefun.com (Harry C. Johnson)
Message-Id: <9505111633.AA27010@mazda.wavefun.com>
To: glee@chem0sun.calstatela.edu
Cc: chemistry@ccl.net
In-Reply-To: <9505110327.AA14047@chem0sun.calstatela.edu> (glee@chem0sun.calstatela.edu)
Subject: Re: CCL:Spartan 3.0 command
Reply-To: hcj@wavefun.com


>>>>> "Ging" == Ging Lee 12-06-90 <glee@chem0sun.calstatela.edu> writes:

    Ging> Can someone please tell me how to go about simulating a
    Ging> thermodynamic annealling process using command available
    Ging> from Spartan 3.0 package.  The system I want to minimize is
    Ging> a twelve units polystyrene oligomer.  I have been using MM3
    Ging> force field available from the package, but I want to take
    Ging> it one step further.

I am not sure this is exactly what you want, but Spartan 4.0, the
latest version, has five different methods for performing
conformational analysis, including Monte Carlo and Genetic Algorithms,
both or which are suitable for large flexible molecules such as your
oligomer.  I have, in fact, applied both methods to a ten unit
polystyrene oligomer with good results.

The conformational analysis package will allow you to use any of
Spartan's three force fields, five semi-empirical methods including
PM3(tm) for transition metals though you probably don't need them, ab
initio if you have the compute resources, or even one of the
externally interfaced packages such as Gaussian, Mulliken, or MM3 (the
program, not just the force field).

If you have any further questions, feel free to let me know.
-Harry

+-----------------------+--------------------------------------------+
|Harry C. Johnson       |  /--- ----\  /---/ ---\ ----- /---/ /|   / |
|Computational Chemist  |  \    /   / /   / /   /  /   /   / / |  /  |
|Wavefunction Inc.      |   \  /---/ /---/ /---/  /   /---/ /  | /   |
|E-mail: hcj@wavefun.com|---/ /     /   / /   \  /   /   / /   |/    |
+-----------------------+--------------------------------------------+



From antunez@chem.cinvestav.mx  Thu May 11 14:35:30 1995
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	by www.ccl.net (8.6.10/930601.1506) id OAA15794; Thu, 11 May 1995 14:30:30 -0400
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	id AA01361; Thu, 11 May 1995 09:31:10 -0600
Date: Thu, 11 May 1995 09:31:10 -0600
From: antunez@chem.cinvestav.mx (Sandra Antunez)
Message-Id: <9505111531.AA01361@latina.chem.cinvestav.mx>
To: chemistry@ccl.net
Subject: CCL: latinamerica
Cc: antunez@chem.cinvestav.mx
X-Sun-Charset: US-ASCII


Dear netters:

I am currently attempting to gather all latinamerican web or gopher sites
in latinamerica related to chemistry. Please respond to my Email address at
antunez@chem.cinvestav.mx.

Thank you for your attention!

Sandra Antunez
Centro de Investigacion y de Estudios Avanzados del IPN
Departamento de Quimica
Mexico D.F.

From kochw@argon.chem.TU-Berlin.DE  Thu May 11 16:50:41 1995
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	by www.ccl.net (8.6.10/930601.1506) id QAA18517; Thu, 11 May 1995 16:38:15 -0400
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          Thu, 11 May 1995 18:49:59 +0200
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From: kochw@argon.chem.TU-Berlin.DE (Wolfram Koch)
Message-Id: <9505111614.AA29345@argon.chem.TU-Berlin.DE>
Subject: qchem
To: chemistry@ccl.net
Date: Thu, 11 May 1995 18:14:13 +0200 (DFT)
X-Mailer: ELM [version 2.4 PL23]
Content-Type: text
Content-Length: 917


Hi,
we heard a lot of rumor about the Gaussian off-spin program called
QCHEM. Can anyone - prefereably those in charge of QCHEM -
provide some information, such as: what is it good for,
where is it better than G9x, how much does it cost (very important...),
where to get it from, any positive or negative experiences, for which
platformns is it available, any GUI available, etc..  
Please respond directly to me.
Thanx,
Wolfram
-- 
_________________________________________________________________________

 Prof. Dr. Wolfram Koch     Institut fuer Organische Chemie, Sekr.C3
                            Technische Universitaet Berlin
                            Strasse des 17.Juni 135, D-10623 Berlin
                            Fon: +49 30 314 27870, Fax: +49 30 314 21102
                            e-mail: kochw@argon.chem.TU-Berlin.DE
_________________________________________________________________________

From jerzy@tiger.jsums.edu  Thu May 11 18:50:35 1995
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	for CHEMISTRY@ccl.net id AA09348; Thu, 11 May 95 17:34:51 -0500
Date: Thu, 11 May 95 17:34:51 -0500
From: jerzy@tiger.jsums.edu (Jerzy Leszczynski)
Message-Id: <9505112234.AA09348@tiger.jsums.edu>
To: CHEMISTRY@ccl.net
Subject: Computational Chemistry Conference




Dear Colleague:

	We are pleased to announce the 4th conference on CURRENT TRENDS IN
 COMPUTATIONAL CHEMISTRY. The symposium organized by Jackson State University 
 will cover all areas of Computational Chemistry as well as Quantum Chemistry. 
 The local host of the conference is US Army Engineer Waterways Experiment 
 Station in Vicksburg.               
 The meeting will be held at the Holiday Inn of Vicksburg (40 miles west from
 Jackson), Mississippi on November 3 & 4, 1995.  The format consists of a 
 series of plenary lectures and poster presentations on Friday and Saturday
 followed by a banquet on Saturday evening. In addition a welcoming
 reception and  poster presentations are scheduled on Friday night.
 There will be talks covering applications as well as theory.  

	We are planning to publish extended abstracts (up to 4 pages) of 
all invited talks and poster presentations.  Original scientific 
contributions will be published in the special issue of the international 
journal "STRUCTURAL CHEMISTRY".  The manuscripts should be submitted in 
triplicate upon the arrival at the registration desk. The submitted papers 
will follow the regular refereeing procedure.
	
	 Enclosed are Announcement Poster, a registration form 
and a housing information. The deadline for registration and  
abstract submission is September 15, 1995.


				Sincerely,

				Jerzy Leszczynski
				
Address:Jerzy Leszczynski,
Jackson State University,				
Dept of Chemistry,
1400 JR Lynch St.,
Jackson, MS - 39217.  
Phone: (601) 973-3482
Fax: (601) 973-3674.
E-Mail : jerzy2@iris5.jsums.edu.





                               PROGRAM

The program will include invited papers and contributed posters in 
all areas of Quantum and Computational Chemistry.


                          INVITED SPEAKERS


	Martin Head-Gordon	University of California Berkeley	
	Kendall Houk    	University of California Los Angeles
	Andrew Komornicki	Polyatomics Research Institute
	Alfred H.Lowrey  	Naval Research Laboratory
	Vincent B.McKoy  	California Institute of Technology
	William H.Miller 	University of California Berkeley
	Vincent Ortiz 	        University of New Mexico
	Eiji Osawa       	Toyohashi University of Technology
	Paul v.R. Schleyer	Universitat Erlangen-Nurnberg
	Isaiah Shavitt  	Ohio State University
	Jeffery Skolnick	Scripps Research Institute
	John Stanton    	University of Texas at Austin




Registration form:

                         4th Conference on

            CURRENT TRENDS IN COMPUTATIONAL CHEMISTRY

            NOVEMBER 3 & 4, 1995, Jackson, Mississippi


1.  NAME:


    MAILING ADDRESS



    TELEPHONE:                  FAX:            E-MAIL:

2.  If you wish to present a poster, please indicate the title
    below.   All abstracts are due September 15, 1995 (up to 4
    pages in length, presenting author underlined, photo-ready 
    quality, in duplicate) to ensure publication in the Conference 
    Materials.

    TITLE:

    AUTHORS:


3.  Conference materials, special issue of the "STRUCTURAL CHEMISTRY", 
    banquet and reception fee, all meals from breakfast on Friday through 
    dinner on Saturday, cofee and refreshments are included per 
    paid participant.  
    Make checks payable to :    Conference on "Current Trends in Computational
                                Chemistry"
		
    in accord with the fee structure listed below.

    Registration fee before September 15, 1995, $125.00 $-------
 
    Registration fee thereafter, $ 175.00              $-------
 
    Registration fee at student discount, $50.00       $-------


5.  HOUSING:  The organizers will not make housing reservations.
    In order to reserve a room at a special conference rate of
    $50.00-$60.00 per room  call Holiday Inn of Vicksburg, 3330 Clay Street,
    Vicksburg, Ms-39180.  Phone (601)636-4551, Fax:(601)636-4552.  The 
    reservation should be arranged with the Holiday Inn before 
    October 15, 1995.

    I do -------     do not ------- plan to stay at the conference
    hotel.

    I do -------     do not ------- plan submit a paper to the special issue 
    of "STRUCTURAL CHEMISTRY"

                                                -----------------
						     signature


Please type all entries and return to Jerzy Leszczynski, Department
of Chemistry, Jackson State University.  P.O.Box 17910, Jackson,
MS 39217.






                            
               



From valery@actcom.co.il  Thu May 11 20:20:35 1995
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Date: Fri, 12 May 1995 00:00:54 +0300
To: chemistry@ccl.net
From: valery@actcom.co.il (Valery Golender)
Subject: Molecule Fits,  Symmetry and WW
Cc: valery-g@dcl.co.il


Dear netters,
I posted earlier today a message on CCL related to the
calculation of 'RMS Fits For Structures That Have Symmetries'. 
I stated that
>In order to make the information publicly available I will put it on >WWW:
>
>http://www.dcl.co.il/conf_clust.html

It took some time to implement this intention, and a number of
netters visited an empty site. Sorry for the inconvenience.
Now it is working. 

Good luck to all web travelers,


Valery Golender, Ph.D.
Director, Chemical Software
DCL Systems International Ltd
20 Galgalei Haplada St. POB 544
Herzlia 46105 ISRAEL
Tel: + 972-9-584-684
Fax: + 972-9-543-917
E-mail: valery-g@dcl.co.il, valery@actcom.co.il


valery@actcom.co.il


From ahirasim@agr.kyushu-u.ac.jp  Thu May 11 21:35:35 1995
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Date: Fri, 12 May 1995 10:27:34 +0900
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From: ahirasim@agr.kyushu-u.ac.jp (Akinori Hirashima)
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Dear netters:

I am currently attempting to gather all  web or gopher sites
related to chemistry. Please respond to my Email address at
ahirasim@agr.kyushu-u.ac.jp.

Thank you for your attention!
ahirasim@agr.kyushu-u.ac.jp (Akinori Hirashima)


