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Date: Fri, 12 May 1995 15:20:07 +1000
To: anchodd@tasman.cc.utas.edu.au, aschin-list@nuscc.nus.sg,
        chminf-l@iubvm.ucs.indiana.edu, chemistry@ccl.net
From: D.Winkler@chem.csiro.au (Dr. Dave Winkler)
Subject: Registrations for International molecular design meeting, Cairns




          M O L E C U L A R   D E S I G N   D O W N   U N D E R

                     AUGUST 27 - SEPTEMBER 1 1995

                       CAIRNS INTERNATIONAL HOTEL,
                  CAIRNS, NORTH QUEENSLAND, AUSTRALIA

This meeting is the 14th Annual Conference of the Molecular Graphics and
Modelling Society (MGMS) presented in 1995 in conjunction with the 12th
Conference of the Medicinal and Agricultural Chemistry Division of the
Royal Australian Chemical Institute (RACI). Note that the venue has changed
>from the earlier posting due to a larger than anticipate response.

SCIENTIFIC PROGRAM
------------------

The program consists of sessions covering five technology areas and five
target areas:

Chemical Similarity  and Biological Diversity
---------------------------------------------
Keynote Speaker:   Dr. Jeffery Blaney, Chiron Corporation, USA

Macromolecular Assemblies: the Supermodels of Molecular Design
--------------------------------------------------------------
Keynote speaker:   Dr. Phoebe Stewart, UCLA, USA

Neural Nets and Fuzzy Sets
--------------------------
Keynote speakers:  Dr. David Livingston, Consultant, UK
                   Dr. Gerry Maggiora, Upjohn Pharmaceuticals, USA

Molecular Recognition
---------------------
Keynote speakers:  Dr. Barry Honig, Columbia University, USA
                   Dr. Regine Bohacek, Ciba-Geigy, USA

Molecular Dynamics:  Deciphering the Data
-----------------------------------------
Keynote Speaker:   Dr. David Osguthorpe, University of Bath, UK

Harnessing the Potential of Natural Products
--------------------------------------------
Keynote speaker:   Dr. Joe Baker, Australian Institute of Marine Science,
                   Australia

The Future of Peptidomimetics
-----------------------------
Keynote speaker:   Prof. Garland Marshall, Washington University, USA

Glycoproteins and Glycobiology- New Wave Pharmaceuticals
--------------------------------------------------------
Keynote Speaker:   Dr. Peter Colman, Biomolecular Research Institute, Australia

Focus on Australian Biomolecular Design and Development- Medicinal Targets
--------------------------------------------------------------------------
Keynote Speaker:   Prof. Graham Johnston, University of Sydney, Australia

Focus on Australian Biomolecular Design and Development- Agricultural Targets
-----------------------------------------------------------------------------
Keynote Speaker:   Dr. George Holan, CSIRO Division of Chemicals and Polymers
                   Australia


CONFERENCE PROGRAM

All sessions and functions will be held at the Cairns International Hotel
beginning with the Welcoming Cocktail Party on Sunday evening and
concluding Friday lunchtime.  A Cruise to the Great Barrier Reef has been
organized on Wednesday to be followed by a barbeque dinner in the evening.
The Conference Dinner will be held on Thursday evening.

The conference program includes oral and poster sessions.  Oral papers will
be presented in plenary sessions during the day.  The Organizing Committee
will select abstracts for oral presentation from the abstracts submitted
with the registration form.  Poster presentations are a major component of
the scientific program with poster sessions on Monday, Tuesday and
Wednesday evenings.

INSTRUCTIONS FOR PREPARATION OF ABSTRACTS AND POSTERS

Abstracts must be prepared for all presentations, both oral and poster.
The original must reach the Conference Secretariat by May 15 for inclusion
in the book of Abstracts that will be provided at the meeting.  Two (2)
camera-ready hard copies of the abstract should also be provided in the
following style:

-  printed on one side of A4 bond white paper
-  12pt Helvetica
-  3cm margin on all sides
-  title in upper case
-  author(s) (full name) with presenting author indicated by *
-  the addresses of the authors
-  a single blank line should follow after the title, the authors' list and
   authors' addresses
-  full abstract in single spaced text


All abstracts for oral presentation will be refereed.  Successful
presenters will be notified by June 15.  They may also be emailed as
attachments (binhexed or uuencoded) in MS Word, RTF or PostScript form.

ADVICE TO SPEAKERS

Audiovisual facilities will include dual standard 35mm slide projection,
video and computer projection, overhead transparency projections and white
boards. Speakers with other needs should contact the Conference Secretariat
as soon as possible.

POSTERS

Posters will be presented on vertical, velcro-compatible panels 1 metre
wide by 2.4 metres high.  Posters may be viewed during the day but
presenters will attend their poster during the assigned poster sessions on
Monday, Tuesday and Wednesday evenings.

REGISTRATION

A registration form follows.  Please complete the form and return  along
with your abstract and appropriate payment to the Conference Secretariat by
May 15.

Full registration entitles participants to the book of Abstracts,
attendance at all sessions including the Sunday Welcoming Cocktail Party.
The Wednesday evening BBQ and all morning and afternoon teas are also
included.  There are no single day registrations.

Registration Fees  (all prices are in Australian dollars: $1 = US$0.75)
-----------------

Members (MGMS and RACI)                    $440
Non-members                                $520
Students                                   $220
Late fee after May 15                      $80
Conference dinner (Thursday)               $50

Students are advised that they must complete the student section of the
registration form to qualify for student rate.  No registration fee will be
charged for accompanying persons.

STUDENT BURSARIES

The MGMS provides financial assistance to students.  Plese contact Dr. Mike
Hann, Glaxo Research and Development (mmh1203@ggr.co.uk) before March 30
for details.

The RACI is providing assistance for Australian students which includes
free accomodation in Cairns and, if funds are available, some assistance
with travel costs.  For further details contact Prof. Peter Andrews, Centre
for Drug Design and Development, University of Queensland
(p.andrews@mailbox.uq.oz.au).

CONFERENCE VENUE AND ACCOMODATION INFORMATION

Sessions will be held in the Grand Ballroon of the Cairns International
Hotel and poster sessions will be in the exhibition area and foyer outside
exhibition area.  A limited amount of accomodation has been reserved at
this 5-star hotel for the conference.  Check in is from 3pm.

Cost:  $175 per room, per night (max 2 adults/room)

Block bookings have also been made at 4 other Cairns hotels:

Reef Plaza:       $115 per night, per room  (4 min walk to conference venue)

Rainbow palms:    $115 per night, per room  (20 min walk to conference venue)

Rainbow Inn:      $115 per night, per room  (20 min walk to conference venue)

Uptop Downunder:  $45 per night, per room (max 4 adults/room)  (10 min walk to
                  conference venue)

The above accomodation prices are room only.

Delegates will allocated their choice of room on a first come first served
basis.

This is the peak season in Cairns and there are extremely heavy demands on
accomodation in the city.  Delegates are requested to pay a deposit by May
15 to secure accomodation.  The above rates are only for conference
attendees and their partners and are only available if booked through the
registration form.

TIMETABLE OF DEADLINES

Student bursary applications      30 March
Last day for early registration   15 May
Submission of abstracts           15 May
Last day for cancellations        30 July
Opening of conference             27 August

ADVICE FOR VISITORS

Average temperature in North Queensland in late August is 21 C.  Dress is
usually light and casual.  Hats, sunglasses and 15+ sunscreen are strongly
recommended for protection from the sun.

A valid passport with visa is required for entry into Australia by all
visitors except New Zealanders.

A variety of tours are available for accompanying persons.

The official language of the conference is English.

----------------------------------------------------------------------------

                     R E G I S T R A T I O N   F O R M

1. DELEGATE NAME AND ADDRESS DETAILS

Name ____________________________________________________________________
      Surname                         Title   First name

Position _________________________________________________________________

Organization ______________________________________________________________

Postal Address ____________________________________________________________

               ____________________________________________________________

               ____________________________________________________________
               State/province     Postcode         Country

Telephone   Work __________________________  Home ________________________

Fax              __________________________  Email ________________________

Indicate membership         MGMS ____      RACI ____

Preferred name for badge ______________________  Surname: __________________

Name of accompanying person (if badge required) ____________________________

Special dietary requirements ________________________________________________

2. ACCOMODATION REQUIRED       __ YES       __ NO

Please indicate your choice of hotel and room type

Cairns Internat Hotel __  Reef Plaza __     Reef Inn __      Uptop Downunder __
  $175/room/night         $115/room/night   $115/room/night  $45/room/night

Max 2 adults/room except Uptop Downunder which is 4/room

Room type    SINGLE __     TWIN SHARE __    DOUBLE __   4 SHARE __

Sharing with (if applicable) ________________________________________________

Arrival date _______ Aug 1995      Estimated arrival time  ______________

Number of nights accomodation required _______  Estimated departure date _____

NOTE:  Rooms will not be held after 6pm on arrival date unless hotel advised

3.  ABSTRACTS

I wish to submit and abstract    __ YES    __ NO

I would be prepared to make an oral presentation if selected  __ YES   __ NO

Abstracts for all presentations should be submitted with this registration form

4. DELEGATE REGISTRATION

                     Registration    After 15 May

MGMS/RACI Members        $440            $520             $ ___________

Non-members              $520            $600             $ ___________

Students                 $220            $300             $ ___________

Accomodation deposit (rate for 1 night)                   $ ___________

Conference dinner (31 August)   _____ tickets @ $50       $ ___________

Reef Cruise (30 August)         _____ tickets @ $110      $ ___________

(I am/am not interested in an introductory dive/certified dive)

Extra tickets for accompanying persons only (free for registrants)

Welcoming cocktail party (27 August)  ____ tickets @ $25  $ ___________

Tropical BBQ (30 August)              ____ tickets @ $25  $ ___________

TOTAL PAYMENT ENCLOSED                                    $ ___________

Please note that registrants after 15 May may not be supplied with satchels
and abstract books

Payment to be made in Australian dollars by cheque or money order  drawn on
an Australian bank, PAYABLE TO:  "Molecular Design Down Under Conference"
and mailed to arrive at the following address by 15 May 1995

     Molecular Design Down Under Conference     Phone   +61 7 369 7866
     c/o Organizers Australia                   Fax     +61 7 367 1471
     PO Box 1237
     MILTON QLD AUSTRALIA  4064

Send email via Ruth Drinkwater, Centre for Drug Design and Development,
University of Queensland (R.Drinkwater@mailbox.uq.oz.au)

5.  STUDENT REGISTRATION

I certify I am currently enrolled as a full-time student at ___________________

_______________________________ for a _________________________ degree course.

                                         Signature     ________________________

Supervisor's information

Name    ___________________________________________________

Address ___________________________________________________

        ___________________________________________________

Phone   _____________________________  Fax ___________________________

Email   _____________________________

                                  Supervisor's signature ______________________

The student accomodation to be provided by the RACI will be at "Uptop Downunder"

-------------------------------------------------------------------------------



Cheers,

Dave

Dr. David A. Winkler                            Voice: 61-3-542-2244
Principal Research Scientist                    Fax:   61-3-543-8160
CSIRO Division of Chemicals and Polymers        CSIRO: http://www.csiro.au
Private Bag 10,Rosebank MDC, Clayton, Australia       http://www.chem.csiro.au




From J.E.Upham@reading.ac.uk  Fri May 12 05:35:40 1995
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          Fri, 12 May 1995 10:21:02 +0100
Date: Fri, 12 May 1995 10:20:49 +0100 (BST)
From: John Upham <J.E.Upham@reading.ac.uk>
To: Akinori Hirashima <ahirasim@agr.kyushu-u.ac.jp>
Cc: chemistry@ccl.net
Subject: Re: CCL:web for chemistry
In-Reply-To: <199505120124.KAA13683@nogakubu.agr.kyushu-u.ac.jp>
Message-Id: <Pine.SUN.3.91.950512102002.18534B-100000@scsscsc3.reading.ac.uk>
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On Fri, 12 May 1995, Akinori Hirashima wrote:

> Dear netters:
> 
> I am currently attempting to gather all  web or gopher sites
> related to chemistry. Please respond to my Email address at
> ahirasim@agr.kyushu-u.ac.jp.


  Hello,

  Try http://www.chem.rdg.ac.uk/ for the University of Reading, U.K.

    john upham


John Upham, Dept. of Chemistry, University of Reading, Berks., RG6 2AD, UK.
Email: scsupham@reading.ac.uk (Internet), scsupham@reading (JANET),
WWW URL:   http://www.chem.rdg.ac.uk/g50/mmrg/john/john.html
Voice: +44 1734 875123 x7451 (day), Fax: +44 1734 311610
TCP/IP talk: talk john@134.225.168.20



From E.WEZENBEEK@elsevier.nl  Fri May 12 08:05:43 1995
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From: <E.WEZENBEEK@elsevier.nl>
X400-Received: by /PRMD=surf/ADMD=400net/C=nl/; Relayed;
               Fri, 12 May 1995 13:20:34 +0200
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Alternate-Recipient: Allowed
Message-ID: <G0000014F12MAY199513103602*@MHS>
To: chemistry@ccl.net
Subject:  THEOCHEM


Dear members of the CCL list,

I would like to thank those of you that have already replied to
the message I posted yesterday. We will be starting our table of
contents service via email in the near future. If you have not yet
replied but are interested in this service, please send me your email
address and you will then be added to the list. Hopefully this service
will result in more electronic additions, and possibly in full electronic
delivery of the journal in the future.

As I mentioned in my original message, THEOCHEM went through many changes
recently. The most important goal we have with the journal is to serve
the whole area of computational chemistry, with a new team of Editors
(Csizmadia, Dykstra, Hiller and Rivail) who are all very keen to enhance the
reputation of the journal. We from our part will ensure that a reduction in
publication time to six months is achieved by the end of 1995.

With kind regards,


Egbert van Wezenbeek

-----------------------------------------------------------------
Dr. Egbert M. van Wezenbeek
Publishing Editor
Elsevier Science BV
Chemistry & Chemical Engineering Department
P.O. Box 330                 	 
1000 AH Amsterdam          	
The Netherlands         	Phone:	(+31-20) 485 2475
e.wezenbeek@elsevier.nl		Fax:	(+31-20) 485 2845

Elsevier WWW server:        	http://www.elsevier.nl
Elsevier Gopher server:      	gopher.elsevier.nl
-----------------------------------------------------------------


From Eric.Buisine@pasteur-lille.fr  Fri May 12 10:05:47 1995
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From: "Eric Buisine" <Eric.Buisine@pasteur-lille.fr>
Message-Id: <9505121547.ZM22613@calmette>
Date: Fri, 12 May 1995 15:47:29 +0000
X-Mailer: Z-Mail (3.2.0 26oct94 MediaMail)
To: chemistry@ccl.net
Subject: Software for the estimation of logP coefficients
Mime-Version: 1.0
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I work on a Silicon Graphics workstation (unix), and I need an "academic"
software allowing the estimation of partition coefficients (octanol/water
logP).

How could I obtain this kind of software ?


			Thanks for your response


-- 
---------------------------------------------------------------------------------
Eric Buisine

INSTITUT PASTEUR - Service de Chimie des Biomolecules - URA 1309 CNRS
1, rue du Professeur Calmette
59019 LILLE
Tel. : 20 87 73 65   Fax  : 20 87 73 77     E-Mail : buisine@pasteur-lille.fr
---------------------------------------------------------------------------------

From nxb96@acs.org  Fri May 12 10:12:30 1995
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To: John Upham <J.E.Upham@reading.ac.uk>
From: nxb96@acs.org (Nan Butterworth)
Subject: Re: CCL:web for chemistry
Cc: chemistry@ccl.net


Try http://amerchem.acs.org/  for the American Chemical Society's home page.
You will have access to all products and services available through the ACS.
Enjoy!  Nan Butterworth

>On Fri, 12 May 1995, Akinori Hirashima wrote:
>
>> Dear netters:
>> 
>> I am currently attempting to gather all  web or gopher sites
>> related to chemistry. Please respond to my Email address at
>> ahirasim@agr.kyushu-u.ac.jp.
>
>
>  Hello,
>
>  Try http://www.chem.rdg.ac.uk/ for the University of Reading, U.K.
>
>    john upham
>
>
>John Upham, Dept. of Chemistry, University of Reading, Berks., RG6 2AD, UK.
>Email: scsupham@reading.ac.uk (Internet), scsupham@reading (JANET),
>WWW URL:   http://www.chem.rdg.ac.uk/g50/mmrg/john/john.html
>Voice: +44 1734 875123 x7451 (day), Fax: +44 1734 311610
>TCP/IP talk: talk john@134.225.168.20
>
>
>
>-------This is added Automatically by the Software--------
>-- Original Sender Envelope Address: J.E.Upham@reading.ac.uk
>-- Original Sender From: Address: J.E.Upham@reading.ac.uk
>CHEMISTRY@ccl.net -- everyone     | CHEMISTRY-REQUEST@ccl.net -- coordinator
>MAILSERV@ccl.net: HELP CHEMISTRY  | Gopher: www.ccl.net 73
>Anon. ftp www.ccl.net     | CHEMISTRY-SEARCH@ccl.net -- archive search
>http://www.ccl.net/chemistry.html |     for info send: HELP SEARCH to MAILSERV
>
>
>


From nauss@ucmod2.che.uc.EDU  Fri May 12 10:35:46 1995
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 for @uc.edu:CHEMISTRY@ccl.net id AA23400; Fri, 12 May 95 10:35:36 -0400
Date: Fri, 12 May 1995 10:35:36 -0400
From: nauss@ucmod2.che.uc.EDU (Jeffrey L. Nauss)
Subject: Transfering files between IBM and SGI
To: CHEMISTRY@ccl.net
Reply-to: nauss@ucmod2.che.uc.EDU
Message-id: <9505121435.AA23400@ucmod2.che.uc.edu>
Content-transfer-encoding: 7BIT



Please forgive the more computer-type as opposed to a more
chemistry-related question.  But I am desperate.

I am trying to transfer files between an IBM R/S 6000 and an SGI 4D/35
using a 150 MB tape.  I will eventually want to transfer data back and
forth between the two machines on a regular basis.  The IBM
workstation is not on a network (and never will be) for some practical
reasons I won't go into.  The IBM is running AIX 3.2.5 and has an
external IBM-brand 1/4 inch 150 MB tape drive.  Blocksize has been set
to variable length.  The SGI is running IRIX 4.0.5 and has an SGI
internal 150 MB drive.
 
I have tried using tar and cpio with no success.  Checksum and other
errors consistantly appear.  But I may not have set some variable
correctly.  Today, I will experimenting with dd but have little
experience with the command.

If anyone knows how to use a tape between IBM and SGI platforms, I
would be very appreciative for any help you can provide.


						Jeff Nauss

****************************************************************************
*  UU    UU             Jeffrey L. Nauss, PhD                              *
*  UU    UU             Director, Molecular Modeling Services              *
*  UU    UU             Department of Chemistry                            *
*  UU    UU CCCCCCC     University of Cincinnati                           *
*   UU  UU CCCCCCCC     Cincinnati, OH 45221-0172                          *
*    UUUU CC                                                               *
*         CC            Telephone: 513-556-0148    Fax: 513-556-9239       *
*         CC                                                               *
*          CCCCCCCC     e-mail: nauss@ucmod2.che.uc.edu                    *
*           CCCCCCC     http://www.che.uc.edu/~nauss                       *
****************************************************************************


From EWING@jcvaxa.jcu.edu  Fri May 12 10:50:51 1995
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Date: Fri, 12 May 1995 10:48:12 -0500 (EST)
From: "David W. Ewing (216) 397-4241" <EWING@jcvaxa.jcu.edu>
Subject: 1995 Morley Symposium and Dinner, honoring Dr. Derek Davenport
To: chminf-l@iubvm.ucs.indiana.edu, neomig@charles.polymer.uakron.edu,
        chemcom@ubvm.cc.buffalo.edu, chemistry@ccl.net
Cc: cesamc@rcwpo2.usaclv.msnet.bp.com, brazdijf@rcwpo2.usaclv.msnet.bp.com
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                      1995 Morley Medal Program
    Cleveland Local Section of The American Chemical Society

        1995 Morley Medalist: DR. DEREK ALFRED DAVENPORT

                       Wednesday, June 7, 1995 
                           Jardine Room
                      Student Activities Center
                       John Carroll University

1:20  Welcome

         Dr. Nick R. Baumgartner
         Dean of the College of Arts and Sciences


      SYMPOSIUM- "This side idolatry: A Tribute to Linus Pauling"

1:25  Opening Remarks

         Dr. James A. Walsh, Symposium Chairman

1:30  "Electronegativity From Avogadro to Pauling"

         Dr. William Jensen, Cincinnati

2:30  "Linus Pauling and Chemical Thought"

         Dr. Henry Bent, Pittsburgh

3:30  INTERMISSION

3:45  "Writing Pauling's Biography: A Twenty-Year Odyssey"

         Dr. Robert J. Paradowski, Rochester

4:45  MORLEY MEDAL ADDRESS
      
      "Letters to F.J.Allen: A Reflected Portrait of Linus Pauling"
    
         Dr. Derek A. Davenport, Purdue

6:00  Social Hour, Faculty Lounge, Administration Building

7:00  Dinner, Faculty Dining Room, Student Activities Center

   RESERVATIONS to : Lynn Moravcik (216) 586-5619 or ewing@jcvaxa.jcu.edu
          Deadline is noon, Friday, June 2; $18 ($8 for students)  

8:00  Presentation of the Morley Medal

         Dr. Mark Cesa, Chairman, Cleveland Local Section

8:15  "Ars Longa, Bursa Brevis: Collecting on an Academic Salary"

         Dr. Derek A. Davenport, 1995 Morley Medalist


For more information: Dr. David Ewing (216)397-4241 or ewing@jcvaxa.jcu.edu

From SATYAM@vms.cis.pitt.edu  Fri May 12 11:20:49 1995
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Date: Fri, 12 May 1995 11:08:36 -0400 (EDT)
Subject: Help with Reviews on RPA and TDA
To: chemistry@ccl.net
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Dear Netters,
Please point us to Reviews/Articles on RPA / TDA..
(some we know are Bouman and Jorgensen )
Thanks a lot
Satyam [[[[ satyam@vms.cis.pitt.edu ]]]]


From SERGEI@ps1515.chemie.uni-marburg.de  Fri May 12 12:05:56 1995
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To: CHEMISTRY@ccl.net
From: "Sergei Vyboishchikov"  <SERGEI@ps1515.chemie.uni-marburg.de>
Date:         12 May 95 17:31:46 MDT
Subject:      Gear method: summary
Priority: normal
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Dear Netters:

Recently I have posted a question concerning Fortran implementations
of the Gear method. I would like to express my sincere gratitude to
the netters whose responses I received. Some of the replies were very
helpful. One of the programs (LSODA) is available, for example, from
ftp://ftp.uni-bayreuth.de/mounts/pubdsk2/math/netlib/sodepack
The book by Vetterling et al. "Numerical Receipts..." does not contain
any Fortran code for Gear method.

Here is the summary of the responses (in part shortened):
--------------------------------------------------------------------
From: uscgckc3@ibmmail.com

Hello Sergei,
The QCPE has a very nice pc program set called "GEAR ITERATOR"
which is available in Microsoft Fortran.  I believe they will even
supply the executable.  The QCPE number is QCMP022.
Regards,
Anthony DeBellis
Ciba Corp.
uscgckc3@ibmmail.com
--------------------------------------------------------------------
From: "FREDERICK IGNATZ-HOOVER" <FFIGNA@ccmail.monsanto.com>

     Try "gear" from the QCPE at the University of Indiana in Bloomington,
     In. USA
--------------------------------------------------------------------
From: doherty@msc.edu (David C. Doherty)

.....<Stuff omitted>
--

On the other hand, you may have some luck poking
around at netlib, for instance:

  http://www.netlib.org/ode/index.html
  ftp://ftp.netlib.org/ode/index

  http://www.netlib.org/odepack/index.html
  ftp://ftp.netlib.org/odepack/index

--------------------------------------------------------------------
From: Dave Edelson <EDELSON@EVAX12.ENG.FSU.EDU>

A reasonable implementation of Gear is found in the IMSL Library, routine
IVPAG, which can be switched between Adams-Moulton or Gear.  However, it
requires the entire library to be implemented, since the routine calls
other subroutines from the library.

Fortran code for older versions of Gear are found in several places in the
literature.

D. Edelson
College of Engineering
Florida A&M/State Universities
--------------------------------------------------------------------
From: ars@ari.net (ARSoftware Corporation)

Though not fortran, Kinetics for Windows is an easy to use Microsoft Windows
based software package for modeling complex chemical reactions and reaction
mechanisms. This unique program computes the concentrations of the chemical
species in a system as a function of time for multistep reversible
reactions, given the reaction mechanism, the forward and reverse rate
constants, and the initial concentrations of reactants and products.

     KINETICS easy to use Windows interface allows you to input complex chemical
systems by simply typing in the reaction equations and the associated rate
constants.  The program automatically formulates the differential equations
necessary to describe the kinetics of the chemical system.  The rate
equations are then numerically integrated using a modified GEAR algorithm.

.....<Stuff omitted>

For more information, contact ars@ari.net

Sincerely,

Sat Want S. Khalsa
ARSoftware

=====================================================
ARSoftware Corporation
8201 Corporate Drive
Landover, MD  20785
Phone:  (301) 459-3773
FAX:    (301) 459-3776

e-mail: ars@ari.net
--------------------------------------------------------------------
From: jcw@biosym.com (Jack Wathey )

Dear Sergei,

The program you want is "lsoda" (acronym for Livermore Solver of Ordinary
Differential equations: Automatic).  It's a robust and highly optimized
FORTRAN implementation with automatic integration step size control.
Unfortunately I don't remember where it is on the net, but you should
be able to find it with Archie or some similar net-searching tool.

Best wishes,

Jack Wathey
Biosym Technologies, Inc.
--------------------------------------------------------------------
From: jpool@ccsf.caltech.edu (J.C.T. Pool)

Have you looked at Netlib for ODE codes?

See

http://www.netlib.org/index.html

or send a message to

netlib.org

with the text

send index

--------------------------------------------------------------------
From: "Dr. Chris L. Waller" <waller@thor.herl.epa.gov>

Numerical Recipes in Fortran book and program diskette.

====================================================================
                         Yours,         Sergei.

From teck.lim@pembroke.oxford.ac.uk  Fri May 12 12:52:11 1995
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From: Teck Lim <teck.lim@pembroke.oxford.ac.uk>
To: chemistry@ccl.net
Subject: xdbx for SGI machine
In-Reply-To: <9505121500.AA29164@acs.org>
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Hi everyone,

  Is there a version of xdbx available on SGI to debug C programs?  I have
checked the Internet and could only locate versions for DEC and SUN.

best regards - teck sin  

From ch11mh@surrey.ac.uk  Fri May 12 13:20:49 1995
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Date: Fri, 12 May 1995 17:49:53 +0100 (BST)
From: Mr Martin J Hargreaves <ch11mh@surrey.ac.uk>
To: "Jeffrey L. Nauss" <nauss@ucmod2.che.uc.EDU>
Cc: CHEMISTRY@ccl.net
Subject: Re: CCL:Transfering files between IBM and SGI
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On Fri, 12 May 1995, Jeffrey L. Nauss wrote:

> I am trying to transfer files between an IBM R/S 6000 and an SGI 4D/35
> using a 150 MB tape.  I will eventually want to transfer data back and
> forth between the two machines on a regular basis.  

> I have tried using tar and cpio with no success.  Checksum and other
> errors consistantly appear.  But I may not have set some variable
> correctly.  

> If anyone knows how to use a tape between IBM and SGI platforms, I
> would be very appreciative for any help you can provide.


	I think the SGI has a reverse byte order on tapes... try:

$ dd -if /dev/tape_device conv=swab | tar xvf -

	This is pretty much what I had to do when exchanges QIC-150 tapes 
between IRIX 4.0.5 and an SVR4.2 system. This is for reading from the 
tape, you'd need to change the order of the commands to write a "normal" 
tape from IRIX.

	Hope this helps,

		Regards,

			Martin.

----------------------------------------------------------------
| Martin Hargreaves, 		            ch11mh@surrey.ac.uk|
| Undergraduate Computational Chemist    		       |
| WWW Server Admin                 http://www.chem.surrey.ac.uk|
----------------------------------------------------------------


From mn1@helix.nih.gov  Fri May 12 15:51:05 1995
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Date: Fri, 12 May 95 15:39:37 -0400
From: mn1@helix.nih.gov (M. Nicklaus)
Message-Id: <9505121939.AA26315@helix.nih.gov>
To: everyone@helix.nih.gov, --@helix.nih.gov, CHEMISTRY@ccl.net
Subject: Summary: Personal Structure/Bioassay/Inventory DB's


Dear CCL'ers,

This is the summary of the responses I received to my question
on Personal Structure/Bioassay/Inventory Databases.  My question as
well as the answers have been slightly edited for the sake of 
brevity.  I have also included short excerpts from a magazine
article I was made aware of, and which might be interesting in this         
context.  It appears that there are a number of exciting new   
developments going on in this field.  Thanks to all who responded.

Marc C. Nicklaus

======================================================================

QUESTION:
=========
(asked on May 4, 1995)      

We'd like to ask everyone [about] ...personal and project-oriented
chemical databases [for] typically ...up to a few hundred or maybe 1000
[compounds].  Such a database (system) would ideally
- allow storage and search of 2D chemical structures, numerical data
  such as bioassay results and inventory data, textual data such as 
  comments and planned steps in a project, reference data such as 
  literature references etc.  A really *good* system would allow 
  intelligent handling of semi-quantitative data such as "IC50 > 100uM"
  for the purposes of queries, sorting etc.;
- allow "upward linking", i.e. to molecular modeling (programs)....
- allow "downward linking", i.e. to word processing, DTP and similar
  programs for the purpose of manuscript and presentation preparation.
  It should at least allow printing of publication-quality output such
  as tables containing 2D structures etc., but should ideally allow to
  create, e.g., PostScript files and/or export output to the common 
  word processor formats such as WordPerfect, Word etc.
- be available on, and allow seamless data transfer between, the
  platforms/OS's Unix, PC's (DOS(?) / Windows / OS/2), Mac's;
- be easy to install, maintain, and use even for a non-database expert;
  in particular, the database definition (number, order, name of columns,
  type of data etc.) should be easily changeable as the project evolves;
- be as low-cost as possible, or even an outright public domain program.

======================================================================

ANSWERS:
========

From: "Craig Shelley" <craigs@softshell.com>

Entropy from SoftShell will ship in late May.  It is intended for personal or
small project databases and fits most of your requirements.  The price is $599
business, $399 academic or government, $99 student.  It requires our structure
drawing programs, ChemIntosh or ChemWindow.  
- allow storage and search of 2D chemical structures, numerical data....
>>It should satisfy these needs, or at least most of them - it is not entirely
clear to me based on this comment.
- allow "upward linking", i.e. to molecular modeling (programs)....
>> You can save structures as MDL molfiles that can be transferred to many
molecular modeling packages.  It also supports SCF, a nonproprietary chemistry
standard that we are glad to share with others.
- allow "horizontal linking", i.e. to other, larger-scale database....
>> It cannot do this in the first release.  MDL SDfiles can be imported into
Entropy.
- allow "downward linking", i.e. to word processing, DTP....
>> Yes.  This is what we specialize in.
- be available on, and allow seamless data transfer between, the platforms....
>> Available for Windows and Macintosh.  The Entropy file format is the same for
both platforms.  The files can be transferred or placed on servers accessible to
both Window and Macintosh computers.
- be easy to install, maintain, and use even for a non-database expert....
>> We have tried to make this product simple.  We had 400 Entropy beta testers
that were very helpful.  Entropy excels at creating databases without formatting
too.
- be as low-cost as possible, or even an outright public domain program.
>> It's not free.  No matter how simple a database program is, you invest time
in creating the data for it.  Would you really want an unsupported product that
you invest a significant amount of time in?

For information on Entropy or our spring catalog of chemistry products, send
email to info@softshell.com.  Please don't send general information requests to
me.

Craig Shelley, President
SoftShell

----------------------------------------------------------------------

From: James Dill <James_Dill@camsci.com>

I'm very interested in your posting regarding a personal chemical database.  
It comes at just the right time, as I am working at Cambridge Scientific 
Computing (now known as CambridgeSoft) on a new project to develop such a 
system for Windows.  Although it will probably be called ChemFinder, it will 
have little or nothing in common with our Mac program by that name, in case 
you have knowledge of that one.

I plan to study your list of requirements closely, and will have questions 
which I hope you are available to answer by e-mail.  I'd like to keep abreast 
of any suggestions you hear from respondents.  My main question at the moment 
is:  which system now available comes closest to what you need, and where does 
it fall short?

We're committed to delivering what the community wants.  You're invited to 
help design it.  Thanks in advance for your input.

  -- Jim Dill
      CambridgeSoft
      jdd@camsci.com

----------------------------------------------------------------------

From: D.Winkler@chem.csiro.au (Dr. Dave Winkler)

We have been doing this in several ways for a few years.  The best solution
we found is the Tripos Unity/Sybyl database/modelling system.  It is
available on multiple platforms, allows fast substructure searches which
can link easily to data stored in Oracle or Ingress, links transparently to
the excellent Sybyl modelling package.  There is a new product called
Unison which combines all these functions in a very user-friendly manner.
I can recommend this approach.  Alternatives such as MDL's Isis are too
expensive for us (>100K last we heard) although their IsisBase database for
PC/Mac may do most of what you want if you have only 1000 or so compounds,
don't require a completely integrated solution like Unity/Unison and don't
want to spend much.

Our system is an SGI Indigo IIxl linked via TCP/IP to a network of Macs.
We run Oracle, Sybyl and Unity on the Indigo and connect from the Macs
using MacX.  As Unison is further developed, we will switch to using this
for access, rather than MacX.  We also use the Mac clients for the Oracle
database server via SQL*Net if purely numeric/text database searches are
required.  We get around the IC50>100 etc problem by storing two values,
the % inhibition and the concentration.  For an IC50 of 10 this would
involve storing 50 (%) and 10 (micromolar).  For the IC50>100 example we
would store say 22 (%) or whatever the inhibition was at 100 micromolar,
and 100 (micromolar).

Dr. David A. Winkler                            Voice: 61-3-542-2244
Principal Research Scientist                    Fax:   61-3-543-8160
CSIRO Division of Chemicals and Polymers        CSIRO: http://www.csiro.au
Private Bag 10,Rosebank MDC, Clayton, Australia       http://www.chem.csiro.au

----------------------------------------------------------------------

From: Tom Hagadone <9505051719.A10168@pwinet.upj.com>

Regarding your database question; Here at Upjohn we use a chemical structure 
add-in for Microsoft Access derived from our in-house Cousin system to 
manage personal, project and departmental chemical databases containing up 
to about 10,000 structures and their associated data. The add-in supports 
high quality 2-D structure diagrams, fast full structure, substructure, and 
similar structure searching, hit list manipulation and most features 
expected in a full-function chemical database system. Recently, the add-in 
was compared to ISIS/Base by an independent group within Upjohn and judged 
to be superior according to the group's judgement criteria.

Last week (4/27) I sent a manuscript titled "Capturing Chemical Structure 
Information in a Relational Database System: The Chemical Software Component 
Approach" to Bill Milne to be considered for publication in JCICS. As 
supplementary material to the paper I have included the complete Cousin 
add-in for Access for publication on the ACS Internet server if the paper is 
accepted. (...)

Tom Hagadone                         e-mail: trhagado@pwinet.upj.com
Information Scientist                Phone: (616) 385-7223
Computer-Aided Drug Discovery        Fax:   (616) 385-8488
The Upjohn Company

----------------------------------------------------------------------

From: mws@tiac.net (Michael Swartz)

There are two programs that "sort of" meet the requirements you mention:
ChemFinder from Cambridge Scientific Computing and Entropy from SoftShell
International. Both programs have minor database and substructure searching
functionality. ISIS/Base from MDL currently meets your requirements better
than anything else though it is quite expensive. ChemFinder has the
advantage of working with Chem3D though it has many irritating information
management deficiencies.

To get full functioanlity, however, you need a major system. NCI is
currently installing our RS3 system - an ORACLE-based structure search
system - to manage their structures. (...)

Michael Swartz
Marketing Director
Scientific Information Systems
PSI International, Inc.

----------------------------------------------------------------------

>From Chemical Design Automation News, January/February 1995, p. 10-11:

"Synopsys Scientific Systems Ltd. has launched its innovative chemical
spreadsheet, Accord, for Microsoft Excel, on the Macintosh and Power 
Macintosh platforms. (...)

[It provides] scientists with a full range of chemical facilities to
manage, analyze and search chemical structures and associated data 
within Microsoft's popular spreadsheet environment. (...)  [U]sers
can store chemical structures and other chemical objects, such as
substituents, directly in spreadsheet cells with retained 'chemical
awareness'. (...)

Standard chemical editors, such as ChemDraw and ISIS/Draw, can be used
to enter and modify structures or queries.  And chemical data, stored
in database systems such as MACCS and ISIS, can easily be imported 
into an Accord-enabled Excel spreadsheet with retained chemical 
awareness.  Similarly, individual structures or whole chemical data 
tables can be exported in a variety of standard formats, such as SD, 
SMD and SMILES. (...)

Accord for Excel is compatible with both Microsoft Excel 4.0 or 
higher and is available for the Microsoft Windows, Macintosh and Power
Macintosh platforms at an introductory price of L495 ($695).  A 40%
discount is available to academics.

For further information, contact Dr. Glen Hopkinson or Dr. Paul Hoyle,
at Synopsys Scientific Systems Ltd., (...) ++44-113-245-3339; FAX:
++44-113-243-8733; in the US: (609) 734-7431; in Japan: 81-3-3805-6651;
e-mail: sales@synopsys.co.uk."

======================================================================

------------------------------------------------------------------------
 Marc C. Nicklaus                        Lab. of Medicinal Chemistry
 e-mail: mn1@helix.nih.gov               National Cancer Institute, NIH
 Phone:  (301) 402-3111                  Bldg 37, Rm 5B29
 Fax:    (301) 496-5839                  BETHESDA, MD 20892-4255
------------------------------------------------------------------------


From haney@netcom.com  Fri May 12 16:20:51 1995
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From: haney@netcom.com (Dr. David N. Haney)
Message-Id: <199505122016.NAA20983@netcom18.netcom.com>
Subject: CCL:Transfering files between IBM and SGI
To: CHEMISTRY@ccl.net
Date: Fri, 12 May 1995 13:16:12 -0700 (PDT)
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Jeff Nauss writes:

"..I am trying to transfer files between an IBM R/S 6000 and an SGI 4D/35
using a 150 MB tape.  I will eventually want to transfer data back and.."

A key difference between SGI tar and everyone else's (it seems) tar is that
the standard SGI device (/dev/tape) is byte swapped.  So if you read an
IBM tape on the SGI you must use something to unswap the bytes.  Try
using /dev/tapens.  You might also be able to use this device when writing
a tape to be read on the IBM.

-- 

        **************  David N. Haney, Ph.D.    ****************
        *  Haney Associates               Phone - 619-566-1127  *
        *  12010 Medoc Ln.                                      *
        *  San Diego, CA 92131            Fax - 619-586-1481    *
        **************  Email - haney@netcom.com  ***************

From shenkin@still3.chem.columbia.edu  Fri May 12 17:20:52 1995
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From: "Peter Shenkin" <shenkin@still3.chem.columbia.edu>
Message-Id: <9505121712.ZM1521@still3.chem.columbia.edu>
Date: Fri, 12 May 1995 17:12:40 -0400
In-Reply-To: haney@netcom.com (Dr. David N. Haney)
        "CCL:Transfering files between IBM and SGI" (May 12,  1:16pm)
References: <199505122016.NAA20983@netcom18.netcom.com>
X-Mailer: Z-Mail (3.1.0 22feb94 MediaMail)
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On May 12,  1:16pm, Dr. David N. Haney wrote:
> Subject: CCL:Transfering files between IBM and SGI

> Jeff Nauss writes:
> 
> "..I am trying to transfer files between an IBM R/S 6000 and an SGI 4D/35
> using a 150 MB tape.  I will eventually want to transfer data back and.."
> 
> A key difference between SGI tar and everyone else's (it seems) tar is that
> the standard SGI device (/dev/tape) is byte swapped.  

No; this is only if /dev/tape is a QIC drive, as Jeff's indeed is.  But
if /dev/tape is anything else, such as DAT, SGI's tar doesn't swap bytes.

To be precise (and after all, we are scientists, aren't we?), SGI's tar 
has never swapped bytes;  but their QIC controller always has, and still
does, in the name of back-compatibility.

So unless you, like Jeff, have a QIC (cartridge) drive, you can forget
this whole business.

	-P.

-- 
************************ The secret of life: *************************
*Peter S. Shenkin, Box 768 Havemeyer Hall, Chemistry, Columbia Univ.,*
* New York, NY  10027;     shenkin@columbia.edu;     (212) 854-5143  *
************* If you find a loose thread, don't pull it. *************


From bob_kern@prenhall.com  Fri May 12 18:05:51 1995
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Date: Fri, 12 May 95 17:38:36 EST
From: "Bob Kern" <bob_kern@prenhall.com>
Message-Id: <9504128003.AA800326659@SMTP-Gate.prenhall.com>
To: chemistry@ccl.net
Subject: Chemistry animation work available


     
     
     Prentice Hall (college publishing division of Simon & Schuster) is 
     revising its intro and general chemistry textbooks and looking for an 
     animator to create high end animations (as one would get off SGI 
     machines using Topaz) of select reactions and compounds.  The animator 
     would be provided with a detailed storyboard.
     
     Please direct inquires to bob_kern@prenhall.com
     
     Thanks
     
     -bob
     
     
     Robert Kern
     Senior Product Manager, Multimedia Group
     Prentice Hall
     
      "  "
      0  0
       ""
     \----/


From gerard@scripps.edu  Fri May 12 20:50:56 1995
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Date: Fri, 12 May 95 17:41:01 -0700
From: gerard@scripps.edu (Gerard Jensen)
Message-Id: <9505130041.AA25345@voodoo>
To: chemistry@ccl.net
Subject: PC based molecular modeling



CCLers.

Recently there was a post asking about PC based 
molecular modeling.  This latter did not specify 
the type of molecules in question but this may 
be of interest generally:

There is a relatively new program for looking at 
protein structures called MolW.  It is inexpensive, and 
can do many of the things that more expensive modeling 
software can do (e.g. CPKs, making color slides, etc.).

Here is the relevant info:

**********************************

Molecular Images
4541 Hidalgo Ave
San Diego, CA 92117
Tel/FAX (619)483-2051
email: MISoftware@aol.com


Molecular Images is $295, $195 academic
(+ tax (if CA) + $5 shipping and handling)
P.O.s accepted

(Molecular Images = MolW)

**********************************


GM Jensen

P.S. All the usual disclaimers this has nothing to do with 
Scripps or me personally or yada yada yada.....

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| Gerard  M. Jensen, Ph.D.                                         _________  |
|                                        | gerard@scripps.edu     |  _____  | |
| Department of Molecular Biology, MB-8  |                        | |  _  | | |
| The Scripps Research Institute         | Tel: + (619) 554-4325  | | |_| | | |
| 10666 North Torrey Pines Road          | Fax: + (619) 554-6188  | |_____| | |
| La Jolla, CA 92037, U.S.A.             |                        |_________| |
|                                        |                                    |
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