From jkl@ccl.net  Tue Sep 12 00:00:21 1995
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Date: Mon, 11 Sep 95 20:46:57 -0700
From: hcj@mazda.wavefun.com (Harry C. Johnson)
Message-Id: <9509120346.AA27529@mazda.wavefun.com>
To: guillem@gauss.uib.es
Cc: chemistry@ccl.net
In-Reply-To: <9509080940.AA15325@gauss.uib.es> (guillem@gauss.uib.es)
Subject: Re: CCL:Molecular Similarity
Reply-To: hcj@wavefun.com


>>>>> "Pablo" == guillem  <guillem@gauss.uib.es> writes:

    Pablo> I will like to know if there are any public-domain
    Pablo> (available by FTP) programs to do molecular similarity
    Pablo> studies on ACD (Available Chemical Directory) databases
    Pablo> from ISIS running on SGI platforms. I will also like to
    Pablo> receive any information on Molecular Similarity studies and
    Pablo> related software.

Version 4.0 of Spartan now has a superpositioning/similarity analysis
module.  Feel free to drop me an e-mail note for more information.

-Harry

+-----------------------+------------------+-------------------------+
|Harry C. Johnson IV    |  ______________  | E-Mail: hcj@wavefun.com |
|Computational Chemist  |  \  _________	/  | Phone:  (714)955-2120   |
|Wavefunction Inc.      |   \ \\\\\\\\/	   | Fax:    (714)955-2118   |
|18401 Von Karman       |    \ \\\\\/	   |                         |
|Suite 370              |     \	\\/        | "Seems to me its all    |
|Irvine, CA 92715       |      \/	   |  just chemistry" - RUSH |
+-----------------------+------------------+-------------------------+




From mito@aqua.chem.nagoya-u.ac.jp  Tue Sep 12 00:15:30 1995
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Date: Tue, 12 Sep 1995 13:04:46 +0900
From: Masakatsu Ito <mito@aqua.chem.nagoya-u.ac.jp>
Message-Id: <199509120404.NAA04738@aqua.chem.nagoya-u.ac.jp>
To: chemistry@www.ccl.net
Subject: Passing MO coefficients to MOLPRO94?


Dear Netters,

 I am wondering if there are somebody has tried to pass
MO coefficients calculated by other program ( e.g. GAMESS
,G94 etc. ) to MOLPRO94 as an initial guess.
 I am trying to calculate the extensive CASSCF/MRCI wavefunctions
with MOLPRO94 and have to calculate CASSCF wavefunction including
the 33 valence orbitals. Since MOLPRO94 can not deal with the
CASSCF of this size, I want to use CASSCF-MO calculated 
by G94 or GAMESS as one-particle basis functions in the MRCI
wavefunction. I have read the user's manual and have recognized that
we can not give the MO coefficients in the input file.
 So, I want to write MO coefficients into the dump file in the
same way in which MOLPRO writes them.
 Any hints or information are greatly welcomed. Thanks in advance.

Masakatsu Ito
Department of Structual Molecular Science
The Graduate University for Advanced Studies
Tel 81(Japan)-52-789-3656
Fax 81(Japan)-52-789-3551
E-mail mito@aqua.chem.nagoya-u.ac.jp
 

From Steven.Creve@chem.kuleuven.ac.be  Tue Sep 12 03:15:25 1995
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Date: Tue, 12 Sep 1995 09:10:17 +0100 (NFT)
From: Steven Creve <Steven.Creve@chem.kuleuven.ac.be>
To: Kristine Butcher <butcher@robles.callutheran.edu>
Cc: chemistry@www.ccl.net
Subject: Re: CCL:Amsterdam DF calcs on a Dec Alpha
In-Reply-To: <9509112003.AA11312@robles.callutheran.edu>
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Hi,

I think you should mail to karel.doclo@unifr.ch  .
I know that he is using ADF on a Dec Alpha, so try that.


Steven


From jkl@ccl.net  Tue Sep 12 03:21:15 1995
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From: "Adam Fedorowicz (AKOLL)" <AFED@CHEM.UNI.WROC.PL>
To: chemistry@ccl.net
Date:          Tue, 12 Sep 1995 09:06:37 GMT+1
Subject:       Toshi-Fumi potential
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    Hi Netters!
    
  I try to do MD in molten AgCl and solid Ag. I need parameters for 
Toshi-Fumi potential.
    Many thanks for your help.
    
        Adam Fedorowicz
        
  Institut of Chemistry Wroclaw, Poland
  
            Email:  afed@chem.uni.wroc.pl
            
            
            


From mito@aqua.chem.nagoya-u.ac.jp  Tue Sep 12 05:00:26 1995
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Date: Tue, 12 Sep 1995 17:56:41 +0900
From: Masakatsu Ito <mito@aqua.chem.nagoya-u.ac.jp>
Message-Id: <199509120856.RAA08150@aqua.chem.nagoya-u.ac.jp>
To: chemistry@www.ccl.net
Subject: Summary: Using valence double zeta basis in MOLPRO94. 


Dear Netters,

 I would like to thank everyone who send me advice and sample inputs
as an example of how to define your owm primitives and contractions
within the MOLPRO package. I am grad to know the www page
http://www.emsl.pnl.gov:2080/forms/basisform.html
where you can get the basis sets information easily.

 Here are the responses that I received so far:

From: Stefan Schulz <sschulz@chemie.fu-berlin.de>
Subject: Re: CCL:Using valence double zeta basis in MOLPRO94? 
Date: Mon, 11 Sep 95 11:28:13 MESZ

>   Can somebody out there give me some advice or sample inputs as
> an example of how to define your own primitives and contractions
> within the MOLPRO94 package?  I want to use Dunning/Hay "valence
> double zeta" basis set (T.H.Dunning, Jr., P.J.Hay Chapter 1 in 
> "Methods of Electronic Structure Theory", H.F.Schaefer III, Ed.
> Plenum Press, N.Y. 1977, pp 1-27). MOLPRO basis set library does not
> include this basis set, so I have to define the primitives and 
> contractions. There is no example of this kind in the manual, 
> although the syntax for contracted set definitions is described 
> in chapter 10.
>  Thanks in advance.
> 
Hi,

a few weeks ago I ran into a similar problem. I was trying
to use the 6-311++G(3df,3pd) basis as given by
http://www.emsl.pnl.gov:2080/forms/basisform.html
with the sodium-ammonia dimer.
Here is the MOLPRO94 input for this basis.
I hope this helps.


Regards


Stefan Schulz

!-------------------------------------------
! Basis set specification
! BASIS 6-311++G(3df,3pd)
!-------------------------------------------
basis={s,Na,36166.40000000,5372.58000000,1213.21000000,339.62300000,109.55300000
,38.77730000;
       c,1.6,0.00103200,0.00807100,0.04212900,0.16978900,0.51462100,0.37981700;
       s,Na,   38.77730000, 14.57590000, 5.26993000;
       c,1.3,   0.37476200,  0.57576900, 0.11293300;
       s,Na,    1.82777000;
       s,Na,    0.61994800;
       s,Na,    0.05724000;
       s,Na,    0.02404800;
       p,Na,  144.64500000, 33.90740000, 10.62850000, 3.82389000;
       c,1.4,   0.01148500,  0.08238300,  0.31965800, 0.70129500;
       p,Na,    1.44429000,  0.55262100;
       c,1.2,   0.63850600,  0.42536500;
       p,Na,    0.18872000;
       p,Na,    0.04650100;
       p,Na,    0.01628500;
       d,Na,    0.70000000;
       d,Na,    0.17500000;
       d,Na,    0.04375000;
       f,Na,    0.15000000;
       s,Na,    0.00760000;
       p,Na,    0.00760000;
       s,N,6293.48000000,949.04400000,218.77600000,63.69160000,18.82820000,2.720
23000;
       c,1.6,0.00196979,0.01496130,0.07350060,0.24893700,0.60246000,0.25620200;
       s,N,30.63310000,7.02614000,2.11205000;
       c,1.3,0.11190600,0.92166600,-0.00256919;
       p,N,30.63310000,7.02614000,2.11205000;
       c,1.3,0.03831190,0.23740300,0.81759200;
       s,N,     0.68400900;
       p,N,     0.68400900;
       s,N,     0.20087800;
       p,N,     0.20087800;
       d,N,     3.65200000;
       d,N,     0.91300000;
       d,N,     0.22825000;
       f,N,     1.00000000;
       s,N,     0.06390000;
       p,N,     0.06390000;
       s,H,33.86500000,5.09479000,1.15879000;
       c,1.3,0.02549380,0.19037300,0.85216100;
       s,H,     0.32584000;
       s,H,     0.10274100;
       p,H,     3.00000000;
       p,H,     0.75000000;
       p,H,     0.18750000;
       d,H,     1.00000000;
       s,H,     0.03600000}
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
|                              |            Stefan Schulz             |
| sschulz@chemie.fu-berlin.de  | FU Berlin - Theoretical Chemistry    |
| Tel. ++49/30/838 5384 (2351) |            Takustrasse 3             |
| FAX. ++49/30/838 4792        |           D-14195 Berlin             |
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

Date: Mon, 11 Sep 1995 06:39:49 -0700
From: David Woon <woon@hecla.molres.org>
Apparently-To: mito@aqua.chem.nagoya-u.ac.jp

text, H atom cc-pVDZ basis

int;
a1,H;
sp,H,vdz;c;      ! one of the ways to assign the cc-pVDZ set to H
-;pri,0;         ! print out the functions
rhf;wf,1,1,1;accu,12    ! ERHF = -.49927840

int;
a1,H;
s,H,13.01,1.962,0.4446,0.122;                   ! the (4s) functions
c,1.4,0.019685,0.137977,0.478148,0.501240;      ! 1s orbital
c,4.4,1.0;                                      ! s correlation func.
p,H,0.727;                                      ! p polarization func.
-;pri,0;
rhf;wf,1,1,1;accu,12    ! ERHF = -.49927840


From: an@rschp1.anu.edu.au
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	(1.37.109.8/16.2) id AA07954; Tue, 12 Sep 1995 17:55:25 +1000
Date: Tue, 12 Sep 1995 17:35:03 +1100 (EDT)
Subject: CCL:Using valence double zeta basis in MOLPRO94?

Ito san,
an example is:

C  S 6311+2DF :   12    5    1.06    7.09   10.10   11.11   12.12
---6-311+G(2df) from gaussian 92,  Oct 93
  4.56324000D+03  6.82024000D+02  1.54973000D+02  4.44553000D+01  1.30290000D+01
  1.82773000D+00  2.09642000D+01  4.80331000D+00  1.45933000D+00  4.83456000D-01
  1.45585000D-01  4.38000000D-02  1.96665000D-03  1.52306000D-02  7.61269000D-02
  2.60801000D-01  6.16462000D-01  2.21006000D-01  1.14660000D-01  9.19999000D-01
 -3.03068000D-03  1.00000000D+00  1.00000000D+00  1.00000000D+00

______________________________________________________________________________

LINE1:
atom symbol (C)
type (s,p,d, etc) of basis function (S)
title or label of the basis function (maximum 8 characters, I think)
integer indicating number of primitives (12)
integer indicating number of contractions (5)
pairs of integers of the form: {number}.{number} (1.06, 7.09  etc): these
   pairs indicate the contractions, i.e the first contraction is made of the
   first 6 primitives (1.06), the second is made from primitives 7-9, etc.
   Contractions made of one primitive may be omitted. In other words pairs
   like 10.10, 11.11 can be omitted (and this is q good idea, because I
   think there are problems if line 1 is more than 80 characters long)

LINE2:
This is just a comment line

LINE3-end:
The exponents (12 in this case) FOLLOWED by the corresponding coefficients
in tha above shown format (F16.8). (Coefficients equal to 1.0000000 can be
omitted).
 


cheers,

*******************************************************************************
*                                                                             *
* Athanassios Nicolaides                                                      *
* Postdoctoral Fellow                                                         *
* Research School of Chemistry                  phone:  61-6-2493771          *
* Australian National University                fax:    61-6-2490750          *
* Canberra, ACT 0200, AUSTRALIA                 e-mail: an@rschp1.anu.edu.au  *
*                                                                             *
*******************************************************************************






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unsubscribe
  
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From jkl@ccl.net  Tue Sep 12 08:45:36 1995
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To: chemistry@ccl.net
Subject: Summary:NBO manual 
Date: Tue, 12 Sep 95 14:33:57 +0100
X-Mts: smtp


Dear Netters,

Regarding to my original request to the CCL:

>I would like to know if somebody could share with me an electronic (text or 
>postcript) copy of the NBO manual (available via FTP or WWW). I have already 
>done a search into the CCL archive, but infortunately the copy that resides in: 
>/chemistry/software/SOURCES/FORTRAN/nbo/junk/nbo.txt has several pages 
>corrupted (from p.35 to p.61) and therefore is unreadable. 

The coordinator Jan Labanowski has created another text file called nbo1.txt. 
This one is now readable, and it resides in:

gopher://www.ccl.net:73/00/software/SOURCES/FORTRAN/nbo/junk/nbo1.txt

On the other hand, Gaussian Inc. can provide a hardcopy ($12.5) on request to 
info@gaussian.com.

My thanks to Jan K. Labanowski for his help.

G. Suner

------------------------------------------------------------------------ 
Dr Guillermo A. Suner; Dep. de Quimica, UNIVERSITAT DE LES ILLES BALEARS
E-07071-Palma de Mallorca, SPAIN.
E-mail: guillem@gauss.uib.es    Tel: + 34 71 173498  Fax: + 34 71 173426 
WWW URL: http://www.uib.es/depart/dqu/dquo/suner.html

From niels@medchem.dfh.dk  Tue Sep 12 10:45:31 1995
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please unsubscribe


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########################################################################
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Royal Danish School of Pharmacy
Department of Medicinal Chemistry
Universitetsparken 2
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Denmark
tel +45 - 35 37 08 50
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From jkl@ccl.net  Tue Sep 12 12:30:31 1995
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From: Stefan Schulz <sschulz@chemie.fu-berlin.de>
Subject: basis input MOLPRO94
To: chemistry@ccl.net
Date: Tue, 12 Sep 95 18:24:58 MESZ
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Dear Netters,

I have been playing around with MOLPRO94 quite a bit lately
and ran into this problem:

Suppose my molecule consists of Na,N,and H atoms and my
basis input is given as

basis={sp,Na,sto-3g;c;
       sp,N,sto-3g;c;           (1)
       s,H,sto-3g;c;}

If I understand the MOLPRO94 manual correctly this should be 
completely equivalent to using 

basis=sto-3g                    (2)

but as it turns out version (1) crashes whereas version (2)
works as desired. According to the output file when employing 
version (1) the program seems to read the S basis functions for 
the sodium atom twice:

 Library entry Na S STO-3G                selected for group 1
 Library entry Na S STO-3G                selected for group 1
 Library entry Na P STO-3G                selected for group 1
 Library entry N  S STO-3G                selected for group 2
 Library entry N  P STO-3G                selected for group 2
 Library entry H  S STO-3G                selected for group 3

After a while the program exits with the following error message

libm-345 : UNRECOVERABLE 
  Vector SQRT() is called with negative argument.    
Abort

 Beginning of Traceback:
  Called from line 77 (address 762117d) in routine 'trbk'.
  Called from line 247 (address 520434d) in routine '_fsig'.
  Called from address 504666d in routine '__handlr'.
  Called from address 506664a in routine 'killm'.
  Called from line 16 (address 507507a) in routine 'raise'.
  Called from line 36 (address 433603b) in routine 'abort'.
  Called from line 56 (address 564536b) in routine '_libmerror'.
  Called from address 561362c in routine 'ARERP%'.
  Called from address 564276b in routine '%SQRT%'.
  Called from line 554 (address 2556160c) in routine 'REZS'.
  Called from line 903 (address 2542407b) in routine 'SCFINI'.
  Called from line 956 (address 2520103b) in routine 'RHFPRO'.
  Called from line 845 (address 2510643c) in routine 'SCFPRO'.
  Called from line 1355 (address 16313d) in routine '$SEGCALL'.
  Called from line 1355 (address 11514a) in routine 'LEIT'.
  Called from line 97 (address 112b) in routine 'MOLPRO'.
  Called from line 360 (address 16260d) in routine '$SEGRES'.
  Called from line 360 (address 505777d) in routine '$START$'.
 End of Traceback.


obviously caused by the fact that some very small but negative 
eigenvalues of metric are encountered:

 EIGENVALUES OF METRIC

1-0.106E-13-0.224E-14 0.377E-14 0.272E+00 0.379E+00 0.531E+00 0.538E+00 0.908E+00
2 0.379E+00 0.538E+00 0.142E+01 0.146E+01

I know I could use basis=sto3g as well with this example, but the point 
is that I want to use some polarization and diffuse functions later on 
together with the basis sets stored in the programs basis library, so
my problem is not only of academic interest to me.

Can any of those MOLPRO94 whizards out there help me with this one ?



Thanxs in advance


Stefan Schulz


=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
|                              |            Stefan Schulz             |
| sschulz@chemie.fu-berlin.de  | FU Berlin - Theoretical Chemistry    |
| Tel. ++49/30/838 5384 (2351) |            Takustrasse 3             |
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From jkl@ccl.net  Tue Sep 12 13:45:35 1995
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From: schulte@ws09.pc.chemie.th-darmstadt.de (Joachim Schulte)
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Subject: CNDO/INDO Parametrizations for heavy elements (Z>35)
To: chemistry@ccl.net
Date: Tue, 12 Sep 1995 19:42:09 +0200 (CST)
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Dear Ladies and Gentlemen, 

Are there CNDO or  INDO parametrizations for heavy elements with Z > 35
that include the transition elements like e.g. Y? I will need such
parameters for my work on endohdral fullerene radical ions. Our group 
here in Darmstadt performs ESR measurements on such species, so 
a comparison between experimental hyperfine 
coupling elements and theoretically calculated ones would be very helpful. 
Our INDO program here is parametrized for elements up to Br for CNDO and
Zn for INDO.
Useful references concerning this topic would be very welcome. 

Sincerely Yours, 

Joachim Schulte (schulte@ws09.pc.chemie.th-darmstadt.de) 
 

 

From SATYAM@vms.cis.pitt.edu  Tue Sep 12 18:45:36 1995
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Date: Tue, 12 Sep 1995 18:33:58 -0400 (EDT)
Subject: R8000 - SGI's with 6.0.1- Queue System
To: chemistry@www.ccl.net
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Anybody out there has successfully running Dnqs / NQS  or any other
queue system on a network of R8000's with / without INDYs ?
Thanks
Satyam
( We want to set up for Gaussian etc )

From Wmdaniel@aol.com  Tue Sep 12 20:00:37 1995
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