From jkl@ccl.net  Thu Sep 21 02:33:15 1995
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Date: Thu, 21 Sep 1995 02:23:12 -0400
From: jle@world.std.com (Joe M Leonard)
Message-Id: <199509210623.AA04758@world.std.com>
To: chemistry@ccl.net
Subject: Re: submitting jobs to Spartan...


Folks, this isn't really appropos to the list, but I wanted
to "correct" David Weng's post re: Spartan jobs.  With our latest
stuff, you can also run a bunch of molecules by copying them
all into one directory, marking it as a list by

	touch _spartandir

and then submitting the lot to Spartan via

	spartan -x list_dir_name

this will runs the individual frames in the list via the scheduler,
which can include multiple frames on a multi-processor machine, or
multiple frames on multiple machines via basket scheduling.  This
might be easier than mucking about with shells, particularly
in heterogeneous/networked setups w/multiple Spartan nodes.

For Spartan-specific stuff, you should follow this up off CCL,
but I'm sure many packages have added more-complex job scheduling
logic over the years...

Thanx for reading...

Joe Leonard
jle@wavefun.com

From jkl@ccl.net  Thu Sep 21 07:03:18 1995
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Date: Thu, 21 Sep 1995 12:44:44 +0100
To: chemistry@ccl.net
From: kamal@univ-orleans.fr (Kamal AZZAOUI)
Subject: Polarisability


Hi Neters

I would like some information about calculation of the alpha polarisability
in Mopac 5.
 The manual of Mopac gives some explanation not very clear for me.

Thanks in advance 

Kamal


From szilagyi@indy.mars.vein.hu  Thu Sep 21 07:18:19 1995
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From: "Robert K. Szilagyi" <szilagyi@indy.mars.vein.hu>
Message-Id: <9509211302.ZM9174@indy.mars.vein.hu>
Date: Thu, 21 Sep 1995 13:02:48 -0700
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To: isom_anouncements@indy.mars.vein.hu
Subject: Announcement of the ISOM Electronic Bulletin and Discussion List
Cc: szilagyi@indy.mars.vein.hu
Mime-Version: 1.0
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                            A N N O U N C E M E N T

                                                September 21, 1995
Dear Sir/Madam,

   We offered preparation of the mailing list of the ISOM family following the
last session of ISOM11, Durham, two months ago. The International Symposium on
Olefin Metathesis and Polymerisation (ISOM) is a forum of metathesis research.

Background Information on Olefin Metathesis and Related Reactions:

   Olefin metathesis developed to become an interdisciplinary endeavour
comprising aspects of organic and inorganic chemistry, complex and
organometallic chemistry, homogeneous and heterogeneous catalysis, reaction
kinetics, thermodynamics, surface physics, chemical engineering, material
science and even quantum chemistry. It can be considered now as one of the
most successful organic reactions with many application: a versatile tool of
polymer- and petro-chemistry.
   Whenever a problem of molecular architecture arises, metathesis is among the
synthetic routes to be considered and evaluated for its economics. Sometimes it
comes out first, sometimes not, but it is always an alternative taken
seriously.

Some information about the two new forums installed now:
1/ The mailing and discussion list is here, containing
   more than 500 items:

			isom@mm2.vein.hu

   This address is aimed to function as a discussion media, as well,
   distributing your message automatically to all members.

2/ While working on the list and remembering the arguments
   supporting and urging the above action, we have decided to make a
   joint electronic bulletin:

			http://mm2.vein.hu:8000/~isom

   The Bulletin of the International Symposium on Olefin Metathesis (ISOM
   Bulletin), easily available for most metathesis researchers to help the
   scientific and the technical development of the field.

   We invite the people, who have been dedicated and devoted to the ISOM
concept and activities in the past, and the newcomers as well, to help to
enhance the scope, the quality and efficiency of this Bulletin.
   If you wish to be incorporated into the mailing list send your name and
address to

			isom-request@mm2.vein.hu

The Bulletin will be provided automatically.

  Please find the technical details below. Call, read and evaluate the outline
of our Bulletin.

  We hope, you will accept our invitation, and provide your support to
achieve our goals. The file is opened to public (free access) because the
editorial board has been completed and  the green light is given.

  We would be glad to realise your ideas, proposals concerning the content
and scope of the ISOM Bulletin. Type http://mm2.vein.hu:8000/~isom
into your uniform resource locator (URL) within MOSAIC, NETSCAPE,
ARENA or LYNX programmes to get connected. Let us know if you need any
help.

   Full documentation of ISOM9 will be also published and those of ISOM11 when
provided. Monthly updating of the data is planned. Next update will be taken
place at the beginning of October!

   I am looking forward to hearing from you.

                Sincerely yours

                                         Prof. Lajos Bencze
                                          editor-in-chief


From jkl@ccl.net  Thu Sep 21 08:33:20 1995
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	id IAA00662; Thu, 21 Sep 1995 08:23:51 -0400
Date: 21 Sep 95 03:52:25 EDT
From: Herbert Koeppen <100317.2656@compuserve.com>
To: "Comput. Chem. List CCL" <chemistry@ccl.net>
Subject: RE: G:R8000 - SGI's with 6.0.1 / Queue system
Message-ID: <950921075225_100317.2656_GHW99-2@CompuServe.COM>


On September 12 Satyam wrote:

> Anybody out there has successfully running Dnqs / NQS  or any other
> queue system on a network of R8000's with / without INDYs ?
> Thanks
> Satyam
> ( We want to set up for Gaussian etc )

Try LSF. It will do it. Contact super@assmt.muc.de.

Herbert

==== Herbert Koeppen PhD, Boehringer Ingelheim KG
==== D-55216 Ingelheim, Germany 
==== phone ++49-6132-776845, fax ++49-6132-773418
==== e-mail 100317.2656@compuserve.com


From szilagyi@indy.mars.vein.hu Thu Sep 21 07:12:42 1995
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From: "Robert K. Szilagyi" <szilagyi@indy.mars.vein.hu>
Message-Id: <9509211302.ZM9174@indy.mars.vein.hu>
Date: Thu, 21 Sep 1995 13:02:48 -0700
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To: isom_anouncements@indy.mars.vein.hu
Subject: Announcement of the ISOM Electronic Bulletin and Discussion List
Cc: szilagyi@indy.mars.vein.hu
Mime-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Status: RO



                            A N N O U N C E M E N T

                                                September 21, 1995
Dear Sir/Madam,

   We offered preparation of the mailing list of the ISOM family following the
last session of ISOM11, Durham, two months ago. The International Symposium on
Olefin Metathesis and Polymerisation (ISOM) is a forum of metathesis research.

Background Information on Olefin Metathesis and Related Reactions:

   Olefin metathesis developed to become an interdisciplinary endeavour
comprising aspects of organic and inorganic chemistry, complex and
organometallic chemistry, homogeneous and heterogeneous catalysis, reaction
kinetics, thermodynamics, surface physics, chemical engineering, material
science and even quantum chemistry. It can be considered now as one of the
most successful organic reactions with many application: a versatile tool of
polymer- and petro-chemistry.
   Whenever a problem of molecular architecture arises, metathesis is among the
synthetic routes to be considered and evaluated for its economics. Sometimes it
comes out first, sometimes not, but it is always an alternative taken
seriously.

Some information about the two new forums installed now:
1/ The mailing and discussion list is here, containing
   more than 500 items:

			isom@mm2.vein.hu

   This address is aimed to function as a discussion media, as well,
   distributing your message automatically to all members.

2/ While working on the list and remembering the arguments
   supporting and urging the above action, we have decided to make a
   joint electronic bulletin:

			http://mm2.vein.hu:8000/~isom

   The Bulletin of the International Symposium on Olefin Metathesis (ISOM
   Bulletin), easily available for most metathesis researchers to help the
   scientific and the technical development of the field.

   We invite the people, who have been dedicated and devoted to the ISOM
concept and activities in the past, and the newcomers as well, to help to
enhance the scope, the quality and efficiency of this Bulletin.
   If you wish to be incorporated into the mailing list send your name and
address to

			isom-request@mm2.vein.hu

The Bulletin will be provided automatically.

  Please find the technical details below. Call, read and evaluate the outline
of our Bulletin.

  We hope, you will accept our invitation, and provide your support to
achieve our goals. The file is opened to public (free access) because the
editorial board has been completed and  the green light is given.

  We would be glad to realise your ideas, proposals concerning the content
and scope of the ISOM Bulletin. Type http://mm2.vein.hu:8000/~isom
into your uniform resource locator (URL) within MOSAIC, NETSCAPE,
ARENA or LYNX programmes to get connected. Let us know if you need any
help.

   Full documentation of ISOM9 will be also published and those of ISOM11 when
provided. Monthly updating of the data is planned. Next update will be taken
place at the beginning of October!

   I am looking forward to hearing from you.

                Sincerely yours

                                         Prof. Lajos Bencze
                                          editor-in-chief



From jomal@dfq.ufrj.br  Thu Sep 21 11:18:22 1995
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	by www.ccl.net (8.6.10/950822.1) id LAA23390; Thu, 21 Sep 1995 11:09:37 -0400
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Date: Thu, 21 Sep 1995 12:09:36 GMT
From: "Joao Otavio M.A. Lins / DFQ-IQ-UFRJ" <jomal@dfq.ufrj.br>
Message-Id: <199509211209.MAA15786@mozart.iq.ufrj.br>
To: chemistry@www.ccl.net
Subject: Kourounakis book


	Dear friends,

	A friend of mine have suggested the book Kourounakis, P.N., "Advanced
Drug Design: A Medicinal Chemistry Approach", Prentice Hall/1994 ed., but I
have not the book to evaluate it. So, could some blessed soul kindly send me
(by fax or email) the table of contents of this book and, if possible, some
oppinions/suggestions?
	Please, to avoid the bandwidth, send all replies to my email address
or the faxes to the number attached below.

	Thanks in advance,


				Joao O.M.A. Lins
			     Quantum Chemistry Group
 ______________________________________________________________________
 Instituto de Quimica da U.F.R.J.            email: jomal@dfq.ufrj.br
 Centro de Tecnologia, bloco A, sala 412     voice: +55-21-590-9890
 Cidade Universitaria                        fax  : +55-21-290-4746
 21949-900  -  Rio de Janeiro  -  RJ       
              BRAZIL                       
 ______________________________________________________________________

From lwong@stallion.jsums.edu  Thu Sep 21 11:48:23 1995
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From: <lwong@stallion.jsums.edu>
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Comments: Authenticated sender is <lwong@stallion.jsums.edu>
To: CHEMISTRY@www.ccl.net
Date:          Thu, 21 Sep 1995 22:48:42 +0000
Subject:       Computational Chemistry Conference
Priority: urgent
X-Mailer: Pegasus Mail for Windows (v2.01)


Second Announcement

Dear Colleague:

	We are pleased to announce the 4th conference on CURRENT TRENDS IN
 COMPUTATIONAL CHEMISTRY. The symposium organized by Jackson State 
University 
 will cover all areas of Computational Chemistry as well as Quantum 
Chemistry. 
 The local host of the conference is US Army Engineer Waterways 
Experiment 
 Station in Vicksburg.               
 The meeting will be held at the Holiday Inn of Vicksburg (40 miles 
west from
 Jackson), Mississippi on November 3 & 4, 1995.  The format consists 
of a 
 series of plenary lectures and poster presentations on Friday and 
Saturday
 followed by a banquet on Saturday evening. In addition a welcoming
 reception and  poster presentations are scheduled on Friday night.
 There will be talks covering applications as well as theory.  

	We are planning to publish extended abstracts (up to 4 pages) of 
all invited talks and poster presentations.

	 Enclosed are Announcement Poster, a registration form 
and a housing information. The deadline for registration and  
abstract submission is October 1, 1995.


				Sincerely,
				Jerzy Leszczynski
				
Address:Jerzy Leszczynski,
Jackson State University,                               
Dept of Chemistry,
1400 JR Lynch St.,
Jackson, MS - 39217.  
Phone: (601) 973-3482
Fax: (601) 973-3674.
E-Mail : jerzy2@iris5.jsums.edu.
				

			       PROGRAM

The program will include invited papers and contributed posters in 
all areas of Quantum and Computational Chemistry.


			  INVITED SPEAKERS
				
	Martin Head-Gordon      University of California Berkeley       
				"Linear Scaling Self-Consistent Field 
				Calculations:Progress and Prospects"
	
	Kendall Houk            University of California Los Angeles
				"Theoretical Studies of Aromatic Molecules: 
				From Cn through Octapyrroles"
	
	Andrew Komornicki       Polyatomics Research Institute
				TBA        
				
	Alfred H.Lowrey         Naval Research Laboratory
				"Theoretical Linear Solvation Energy          
				Relationships for Properties of Energetic 
				Materials"

	Vincent B.McKoy         California Institute of Technology
				"Studies of Electron-Molecule Collisions 
				Using Parallel Computers"
	
	William H.Miller        University of California Berkeley
				"Quantum Theory of Chemical Reaction Rates"

	Vincent Ortiz           University of New Mexico
				TBA

	Eiji Osawa              Toyohashi University of Technology
				"Further Developments in Conformational 
				Space Search"
	
	Paul v.R. Schleyer      Universitat Erlangen-Nurnberg
				"Details of Neighboring Group Participation  
				Revealed"
	
	Isaiah Shavitt          Ohio State University
				"Multirefence Methods in Electronic 
				Structure Theory"
	
	Jeffery Skolnick        Scripps Research Institute
				"Prediction of Protein Structure"
	
	John Stanton            University of Texas at Austin
				"Overwiew of the Equation-of-Motion coupled
				Cluster Methods"

	Don Truhlar             University of Minnesota
				"Solvation Effects on Chemical Structure,
				Equilibria, and Reactivity"


Registration form:

			 4th Conference on

	    CURRENT TRENDS IN COMPUTATIONAL CHEMISTRY

	    NOVEMBER 3 & 4, 1995, Jackson, Mississippi


1.  NAME:


    MAILING ADDRESS



    TELEPHONE:                  FAX:            E-MAIL:

2.  If you wish to present a poster, please indicate the title
    below.   All abstracts are due October 1, 1995 (up to 4
    pages in length, presenting author underlined, photo-ready 
    quality, in duplicate) to ensure publication in the Conference 
    Materials.

    TITLE:

    AUTHORS:


3.  Conference materials, Banquet and reception fee, all meals from 
    breakfast on Friday through dinner on Saturday, coffee and 
    refreshments are included per paid participant.  

    Make checks payable to :    Conference on "Current Trends in 
Computational
				Chemistry"
		
    in accord with the fee structure listed below.

    Registration fee before October 1, 1995, $125.00 $-------
 
    Registration fee thereafter, $ 175.00              $-------
 
    Registration fee at student discount, $50.00       $-------


5.  HOUSING:  The organizers will not make housing reservations.
    In order to reserve a room at a special conference rate of
    $50.00-$60.00 per room  call Holiday Inn of Vicksburg, 3330 Clay 
Street,
    Vicksburg, Ms-39180.  Phone (601)636-4551, Fax:(601)636-4552.  
The 
    reservation should be arranged with the Holiday Inn before 
    October 15, 1995.

    I do -------     do not ------- plan to stay at the conference
    hotel.

    

						-----------------
						     signature


Please type all entries and return to Jerzy Leszczynski, Department
of Chemistry, Jackson State University.  P.O.Box 17910, Jackson,
MS 39217.






			    
	       


From PA13808@UTKVM1.UTK.EDU  Thu Sep 21 14:18:25 1995
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	by www.ccl.net (8.6.10/950822.1) id OAA27933; Thu, 21 Sep 1995 14:05:10 -0400
From: <PA13808@UTKVM1.UTK.EDU>
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 21 Sep 1995 14:04:56 EDT
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 with BSMTP id 9219; Thu, 21 Sep 95 13:11:56 LCL
Date: Thu, 21 Sep 95 13:02:53 LCL
Subject: MOPAC nonlinear prop
To: netters <chemistry@www.ccl.net>
Message-id: <01HVJGWSTEVM8YA4AO@phem3.acs.ohio-state.edu>
Content-transfer-encoding: 7BIT


   The calculation of polarisabilities and hyperpolarisabilities was originally
 programmed into MOPAC by prof. Henry A.Kurz(univ of Memphis). The equations
 are given in full in J. Comp Chem vol 11 page 82(1990). The main thing needed
  to get good results is enough diffuse functions of the right type.A number
   of calc with varying numbers of diffuse func should be done on a model
 compound. I am not sure whether this is allowed in Mopac or not. Check
    on something like ethylene or benzene for which there are very good
    ab initio calc. JEB

From jkl@ccl.net  Thu Sep 21 21:18:30 1995
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Date: Fri, 22 Sep 1995 07:55:32 +1000
To: chemistry@ccl.net
From: apa@adfa.oz.au (Alan Arnold)
Subject: units for DMol potential and density grids


Hoping some kind soul can answer the following Q:

What are the units of Biosym's DMol 2.3.5 density and potential grids?

I have a solid surface of the 0.01 (?units) density contour for a cation
that very closely resembles the CPK surface in size and shape.  Is that
0.01 electrons/cubic Angstrom (or cubic Bohr) or what?  When I color this
surface according to the value of the potential grid, the values range from
+0.3 to +0.6 (is that kJ or ??)

cheers,

----
Alan Arnold, Chemistry Department, University College (UNSW)
Australian Defence Force Academy,  CANBERRA  ACT 2600 Australia
voice:+61 6 268 8080  fax:+61 6 268 8002 e-mail: apa@adfa.oz.au
WWW: http://apamac.ch.adfa.oz.au/apa/apa.html




From jkl@ccl.net  Thu Sep 21 21:26:05 1995
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Date: Fri, 22 Sep 1995 11:05:34 +1000 (GMT+1000)
From: ch172954 <ch172954@student.uq.edu.au>
To: chemistry@ccl.net
Subject: freq calculation on Cl2CH-COOH
In-Reply-To: <199509210623.AA04758@world.std.com>
Message-ID: <Pine.ULT.3.91.950922110325.6491F-100000@student.uq.edu.au>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII




Hello,

I tried to do freq calculations on carboxylic acids.
However, what I get for (Cl)2CH-COOH is different:
I get nothing for "SUM OF HARTREE-FOCK AND THERMAL ENERGIES".
Terminations are Normal and seems to me nothing is wrong with procedure.
I appreciate if you can lead me in this regard.

Many thanks in advance,
Mansoor


>>   --------------------------
>>   # RHF 6-31+G** fopt volume
>>   --------------------------
>>  
>>   2\\Version=CrayYMP-Unicos-G92/DFT-RevG.3\HF=-1145.6037988\RMSD=5.179e-
>>  
>>   ----------------------------------------------------
>>   # rhf/6-31+G** freq geom=checkpoint guess=check test
>>   ----------------------------------------------------
>>  
>>   WARNING-- ASSUMPTION OF CLASSICAL BEHAVIOR FOR ROTATION
>>             MAY CAUSE SIGNIFICANT ERROR
>>  
>>  
>>   WARNING-- EXPLICIT CONSIDERATION OF   6 DEGREES OF FREEDOM AS
>>             VIBRATIONS MAY CAUSE SIGNIFICANT ERROR
>>  
>>   SUM OF THERMAL ENERGIES:    0.0543060 (HARTREE/PARTICLE)
>>   SUM OF HARTREE-FOCK AND THERMAL ENERGIES: ************ (HARTREE/PARTICLE)

From jkl@ccl.net  Thu Sep 21 23:03:31 1995
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Date: Fri, 22 Sep 1995 10:36:00 -0700 (PDT)
From: ldw <ldw@csb0.IPC.PKU.EDU.CN>
To: chemistry@ccl.net
Subject: peptide flexibility
In-Reply-To: <Pine.ULT.3.91.950922110325.6491F-100000@student.uq.edu.au>
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Mime-Version: 1.0
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Dear Netters,
  I want to find a method to calcute the flexibility of  a number of small 
peptides(lenght from 5 to 8). Who can tell me where can I find the such 
softwares(freeware is the better). The method must be efficient and fast. 
The references and suggestions about this problem is also warmly welcome.
 Thanks in advance,
 Dawei
                                         
----------  *** Dawei LIN *** ------------------
             Ph.D student of 
          Molecular Design Lab 
      Institute of Physical chemistry
            Peking University
              Beijing 100871         
                P.R.China
  Phone: 86-10-2501490  Fax:   86-10-2501725
  Email: ldw@ipc.pku.edu.cn 
         ldw@pschnetware.pku.edu.cn 
    URL: http://www.ipc.pku.edu.cn/ldw/ldw.htm
------------------------------------------------



From janr@icm.edu.pl  Thu Sep 21 11:03:22 1995
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From: Jan Radomski <J.Radomski@icm.edu.pl>
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Subject: Numeric data for biol/pharm activities in dbases
To: chminf-l@iubvm.ucs.indiana.edu, chemistry@www.ccl.net
Date: Thu, 21 Sep 1995 17:01:04 +0200 (DST)
Cc: janr@icm.edu.pl (Jan Radomski)



Dear Netters,

according to my information the following databases contain 
pharmacological and biological activities:

Chapman&Hall Dictionary of Parmaceutical Agents
World Drug Index from Derwent
ID Patent Fast Alert from Current Drugs
Agro Chem from Current Drugs
Index Chemicus

also:

Drug Data Report from MDL
Metabolite from MDL
Comprehensive Medicinal Chemistry from MDL.

With the last three we have first hand experience, and only CMC
contains activity data in numerical form (logP's and pKa's).
I'd like to ask what kind of activity data are included in
the five databases on top? Of special interest are of course
numbers, but any additional info will be much appreciated.
Also, if there are any other activity databases not listed
above, please don't hesitate to drop me a line.

I'll summarize replies for the list in case of sufficient 
interest.

Best regards,
Jan Radomski

Interdisciplinary Center for Modeling
Banacha 2, 02-097 Warsaw, Poland
voice: 48-2-6584306, fax: 48-2-6584307
email: janr@icm.edu.pl


