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From: "Dr. Heinz Schiffer" <schiffer@h1tw0036.hoechst.com>
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To: Ahmed Bouferguene <boufer@CeNNAs.nhmfl.gov>
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Ahmed Bouferguene wrote:
> 
> Hi all,
> 
>         Does anybody know a good reference dealing with the limitations of
> Born-Oppenheimer approximation and the way(s) used to solve such a
> problem ?
> 
>         Thanks all.
> 
>  Ahmed Bouferguene

Hi Ahmed,
there is a very good and readable reference by Brian Sutcliffe about
that subject. A rigorous mathematical analysis has been given a
few years ago by Combes, Duclos and Seiler. But I am not aware of
any recent calculations using adiabatic or non-adiabatic corrections
to the BO potential energy surface of molecules. May be some one else
know something about that. It would be interessting to hear about it 
on the list. 
Here are the above mentioned references :

	J. M. Combes, P. Duclos, R. Seiler
	The Born-Oppenheimer Approximation
	in : G. Velo, A. S. Wightman (eds.),
	Rigorous Atomic and Molecular Physics,
	Plenum Press, New York 1981, pp. 185-212
	(NATO Adv. Study Inst. Series, B 74 )

	B. T. Sutcliffe
	The Nuclear Motion Problem in Molecular Physics
	Advances in Quantum Chemistry 28 (1997) 65-80

I hope, this helps a bit.
Ciao
Heinz
-- 
Dr. Heinz Schiffer              Phone   ++49-69-305-2330                        
Hoechst CR&T                    Fax     ++49-69-305-81162                       
Scientific Computing, G864      Email   schiffer@h1tw0036.hoechst.com           
65926 Frankfurt am Main                 Schiffer@CRT.hoechst.com

From herrmann@hermes.informatik.uni-stuttgart.de  Tue Aug 26 05:20:08 1997
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From: Frank Herrmann <Herrmann@informatik.uni-stuttgart.de>
To: mao@csb0.IPC.PKU.EDU.CN
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Subject: previous mail: missing links



Dear FengLou,

I mixed up two Web-Pages. I added now the missing "COMPUTER SCIENCE
AND MATHEMATICS" section to my Homepage. Sorry for the inconvenience.

Regards,

---------------------------------------------------------------------
           Frank Herrmann, Computer Scientist, PhD Student            
   Institute of Parallel and Distributed High-Performance Systems    
                   (IPVR) University of Stuttgart                     
                      Breitwiesenstrasse 20-22                        
                    D-70565 Stuttgart  (Germany)                      
           Tel: (49) 711-7816-358, FAX: (49) 711-7816-250            
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From tp@elptrs7.rug.ac.be  Tue Aug 26 05:24:10 1997
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Date: Tue, 26 Aug 1997 10:30:14 +0200 (DFT)
From: "Park, Tae-Yun" <tp@elptrs7.rug.ac.be>
To: Computational Chemistry List <chemistry@www.ccl.net>
Subject: Relative heat of stabilization differences
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Dear all,

Please allow me to ask you concering relative heat of stabilization
differences of surface bonded carbenium ions related to the corresponding
gas-phase carbenium ions.  I need your insight on this problem VERY
urgently, and certainly I will summerize if there is even slight demand.

Perhaps, the question I want to ask you has been already addressed in the
computational chemistry field, but I can not reach the information.

Consider the following surface bounded carbenium ions,

          C-C-C                C-C-C-C
            |                    |
            O                    O    
           /+\                  /+\
          Al Si                Al Si

      [ C-C(+)-C ]s        [ C-C(+)-C-C ]s


which are usually formed by the protonation of propylene or
butene, i.e.,

C=C-C + [H(+)]s  --->  [ C-C(+)-C ]s
C=C-C-C + [H(+)]s  --->  [ C-C(+)-C-C ]s

where the "[ ]s" means the species on the catalyst surface.  The catalyst
considered here would be any kind of zeolites, say HZSM5, HY...etc, which
are activated by Bronsted acidic site, [H(+)]s. I'm doing some kinetic
modelling work for reactions containing those surface carbenium ions by
relating to their gas-phase carbenium ions, since the thermochemical data
of gas-phase ones are available, while surface ones are dependent on
catalysts.

If one consider the amount of heat stabilization from the gas-phase
carbenim ions to the surface bonded ones due to the cartalyst, i.e.,

q1 = Delta_H_f( C-C(+)-C, gas-phase ) 
     - Delta_H_f( C-C(+)-C, surface bonded)

q2 = Delta_H_f( C-C(+)-C-C, gas-phase ) 
     - Delta_H_f( C-C(+)-C-C, surface bonded)

Obviously the q1 and q2 should be positive, since the surface carbenium
ions are more stable than gas-phase ones.  Here the Delta_H_f means the
heat of formation. It is also expected that the value of the q1 and q2
will vary with different catalysts, depends on the acidic strenth of
catalyst.

My question is, if the catalyst and reaction temperature are fixed, are
the values of the q1 and q2 would be the same?  In other words, are the
values of the amount of heat stabilization from the gas-phase carbenim
ions to the surface bonded ones due to the cartalyst also vary depending
on the structure or molecular weight(or whatever) of the carbenum ions?  

So far, some researchers in our field have assumed that the the value of
the amount of heat stabilization would be more or less independent on the
surface carbenium ions, so that q1 equals to q2 in the example of this
message.  But it seems this assumption does not work in my case.

If the amount of heat stabilization varies with different carbenium ions,
what would be the major factor to make this difference you think?? 

Any suggestion/advice/information(articles, books...) would be GREATLY
appreciated.

Thank you very much in advance




				Sincerely,

				     Park, TAE-YUN    
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
State University of Ghent
Laboratorium voor Petrochemische Techniek
Krijgslaan 281, Blok S5  
9000 Gent, Belgium	  
TEL:+(32)-0(9)-264-4527
FAX:+(32)-0(9)-264-4999
e-mail: tp@elptrs7.rug.ac.be
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=


From youngd2@mail.auburn.edu  Tue Aug 26 09:20:14 1997
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From: David Young <youngd2@mail.auburn.edu>
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To: chemistry@www.ccl.net
Subject: HF Limit Summary
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Hi,

	Thank you, to all that replied about the HF limit.  The references 
that were given pointed me to answers to all but one of my questions.
Here is a summary of the replies received.

	The reference that I have still not found is the rigorous proof of
why single determinant calculations in the infinite basis set limit converge 
to an incorrect energy (the error is called the correlation energy). 
I did track down a 1951 paper mentioning that this proof had not been 
achieved at that time.  It is

T. Kato Trans. Amer. Math Soc. 70, 212 (1951)

                                Dave Young
                                youngd2@mail.auburn.edu

------------------------------------------------------------------------
The original question:

	I've searched a number of sources and not come up with anything,
so I'm hoping someone can send me a reference or point me in the right
direction.

	What I am looking for is a proof of the existence of the
Hartree-Fock limit.  Is it possible that this is an observed result for
which no derivation has ever been done?

                                Dave Young
                                youngd2@mail.auburn.edu

------------------------------------------------------------------------

From: david heisterberg <djh@mosrus.mps.OHIO-STATE.EDU>

Kato proved that the hamiltonian is bounded below, at least, I think, for
molecular cases, so that establishes that there is a lower limit to the
energy.  Is that what you're asking?

Dave Heisterberg

------------------------------------------------------------------------

From: RSTOLOW@PEARL.TUFTS.EDU

Dave,

Is it the Variation Theorem that you are seeking?  If so, see:
Ira N. Levine, "Quantum Chemistry", Fourth Edition, Prentice Hall, 1991,
Chapter 8.

Bob Stolow
Department of Chemistry
Tufts University
Medford, MA  02155

e-mail:  rstolow@emerald.tufts.edu

------------------------------------------------------------------------

From: Georg Schreckenbach <schrecke@t12.lanl.gov>

Hi Dave,

maybe I don't understand your question right, but isn't the HF limit
defined as the exact -- in contrast to approximate, by means of basis
functions -- solution of the HF equations? In that case, I don't think
a proof would be required, or would it ? (i.e., you are only left with
the problem that solutions must exist at all, but this is a fairly esotheric
question, from the point of view of quantum chemistry or solid state physics)
   Further, it follows from vector algebra that any function can be
represented by a complete set of functions for this space. Thus, you
must only make sure that your basis set converges to a complete set.
This should be given, for instance, for simple Gaussians or Slaters
situated on just one center (plane waves are another example of such
a set).

I would like to see your summary -- whether the above is worth two cents
of it or mothing ...

Regards, Georg

--
==============================================================
Dr. Georg Schreckenbach           Tel:     (USA)-505-667 7605
Theoretical Chemistry T-12        FAX:     (USA)-505-665 3909
M.S. B268, Los Alamos National      E-mail:  schrecke@t12.lanl.gov
Laboratory, Los Alamos, New Mexico, 87545, USA
Internet:    http://www.t12.lanl.gov/~schrecke/
==============================================================

------------------------------------------------------------------------

From: David Woon <woon@hecla.molres.org>

The HF limit is a direct implication of the variation principle, i.e.,
the HF wavefunction is a variational wavefunction, possessing a rigorous
upper bound.

Dave Woon

David E. Woon                    |     woon@hecla.molres.org
Molecular Research Institute     |
845 Page Mill Road               |     (650)424-9924 (voice)
Palo Alto, CA 94304              |     (650)424-9501 (fax)

------------------------------------------------------------------------

From: "Nathan A. Baker" <baker@terminator.chem.uiowa.edu>

Isn't the proof of the Hartree-Fock limit simply the proof of the 
validity for a expansion of a function in terms of a complete set?  
Pinsky describes this in terms of Parseval's theorem in his book "Partial 
Differential Equations and Boundary-Value Problems with Applications, 2nd 
ed." on page 20.

In other words, we postulate that some trial function, a linear 
combination of n basis functions, is the solution to the Schrodinger 
equation.  If the n basis functions form a complete set (usually 
infinite), then some linear combination of these (as n goes to infinity) 
is the solution to the Schrodinger equation.

The difference between the true solution and the linear combination is 
called the mean squared convergence, which goes to zero in the limit of a 
complete set.

This probably could have been stated better, but I think I conveyed the 
general gist.

-----------------------------------------------
Nathan Baker * baker@terminator.chem.uiowa.edu

HELP! MY TYPEWRITER IS BROKEN!
	-- E. E. CUMMINGS
-----------------------------------------------

------------------------------------------------------------------------

From: Patrick Cassam-Chenai <pcc@crystal.uwa.edu.au>

Dear Dave,

Check the review paper by M. Defranceschi and C. Le Bris, J. Math. Chem.
21, p.1-30 (1997) on this and related topics.
You'll find the refs. of the proof you're after. It is not
indeed as simple as Nathan Baker has written.

  Patrick Cassam-Chenai
  Laboratoire d'Etude Theorique des Milieux Extremes,
  Ecole Normale Superieure,
  24 rue Lhomond, 75231 PARIS Cedex 05, France
  Tel. (33)/(0) 1 44 32 34 70
  Fax. (33)/(0) 1 44 32 39 92

------------------------------------------------------------------------
      
From: "Dr. Heinz Schiffer" <schiffer@h1tw0036.hoechst.com>

Hi David,
if I understand you correctly, then there are 2 questions. The 1st is
the one about the existence of solutions of the Hartree-Fock equations
(do they have any solution at all !). The 2nd is about convergence
of basis set expansions. The 1st questions might be answered with yes
(but not conclusively, as far I understand ), see e.g.

	Elliott H. Lieb, Barry Simon
	The Hartree-Fock Theory for Coulomb Systems
	Commun. math. Phys. 53 (1977) 185-194

	Elliott H. Lieb, Barry Simon
	On solutions to the Hartree-Fock problem for atoms
	and molecules
	J. Chem. Phys. 61(2) (1974) 735-736

	G. Fonte, R. Mignani, G. Schiffrer
	Solution of the Hartree-Fock Equations
	Coomun. math. Phys. 33 (1973) 293-304

The 2nd question is very difficult to answer. People like Bob Hill,
John D. Morgan, and Werner Kutzelnigg had a hard time thinking of
it, here a few references :

	Werner Kutzelnigg
	Theory of the Expansion of Wave Functions in a Gaussian Basis
	Int. J. Quantum Chem. 51 (1994) 447-463

	John D. Morgan III
	The analytic structure of atomic and molecular wavefunctions
	and its impact on the rate of convergence of variational
	calculations
	in : M. Defranceschi, J. Delhalle (eds.), Numerical 
	Determination of the Electronic Structure of Atoms,
	Diatomic and Polyatomic Molecules, Kluwer, 1989, pp. 49-84

	Robert Nyden Hill
	Rates of convergence and error estimation formulas for the 
	Rayleigh-Ritz variational method
	J. Chem. Phys. 83(3) (1985) 1173-1196

Hope, this helps
Ciao
Heinz
-- 
Dr. Heinz Schiffer              Phone   ++49-69-305-2330                        
Hoechst CR&T                    Fax     ++49-69-305-81162                       
Scientific Computing, G864      Email   schiffer@h1tw0036.hoechst.com           
65926 Frankfurt am Main                 Schiffer@CRT.hoechst.com

------------------------------------------------------------------------

From: "Dr. Bruno Manunza" <bruno@antas.agraria.uniss.it>

Dear Dave, if you are looking for a mathematical proof of the variational 
theorem on which the Hartree-Fock theory is based, you may have a look to:
H. Margenau, G.M. Murphy. The Mathematics of Physics and Chemistry. Van 
Nostrand. Toronto. 1956. The theorem is discussed in the chapter 11.18 
(Quantum Mechanics-Variational Method).

Bye
Bruno


Dr Bruno Manunza
DISAABA (Dept. of Agricultural Environm. Sci)
University of Sassari
V.le Italia 39
07100 Sassari, ITALY
phone: 39 79 229215
fax:   39 79 229276
e-mail: bruno@antas.agraria.uniss.it
e-mail: bruno@tharros.dipchim.uniss.it
e-mail: gx6bot81@cray.cineca.it
web: http://antas.agraria.uniss.it

------------------------------------------------------------------------

From: Richard Bone <rgab@proteus.co.uk>

I believe that the answer given to you by Bruno Manunza is closer to what you
need. 

Some of the other references broadcast to the list are pertinant to perturb-
ation theory methods.

Anyway, if I understand you right, you are looking for the theoretical proof
that there is a "Hartree Fock Limit": i.e., that, in the limit of an infinite
basis set, the lowest eigenvalue solution of the H-F equations converges from
above.  This is a feature of variational methods and was proved rigorously by
MacDonald though I think that you might need to look up some discussion of the
Rayleigh-Ritz "variational principle" in mathematics text books. 

See:

J. K. L. MacDonald, Phys. Rev., 43, 830, (1933)

Hope this is on the right track.

Yours,

Richard Bone

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|  Richard G. A. Bone,  Ph.D.      |                                   |
|  Senior Computational Chemist    |                                   |
|  Proteus Molecular Design Ltd.   |  Tel:   +44 (0)1625 500555        |
|  Lyme Green Business Park        |  Fax:   +44 (0)1625 500666        |
|  Macclesfield,   Cheshire        |  Email: rgab@proteus.co.uk        |
|  United Kingdom      SK11  0JL   |  Web:   http://www.proteus.co.uk  |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

------------------------------------------------------------------------





From g-recht@chem.nwu.edu  Tue Aug 26 13:20:11 1997
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From: Gregory Rechtsteiner <g-recht@chem.nwu.edu>
Message-Id: <199708261633.LAA29087@mercury.chem.nwu.edu>
Subject: NaCl .PDB file
To: chemistry@www.ccl.net
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Hello:

Sorry to bother you with this, but I have run out
of online databases (that I have located).
I am looking for a .pdb file (or sybyl mol file)
of a single crystal of NaCl that HAS "bonds" between
the ions.  I have found some with just the ions, but
I have not been able to add "bonds" between them.
(This is for illustrations purposes).

Thank you for your time,

Greg

--

Greg Rechtsteiner
Department of Chemistry
Northwestern University
Evanston, IL 60208
g-recht@chem.nwu.edu





From jaimeco@pecos.rc.arizona.edu  Tue Aug 26 14:20:12 1997
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Date: Tue, 26 Aug 1997 10:32:09 -0600 (MDT)
From: "Jaime E. Combariza" <jaimeco@pecos.rc.arizona.edu>
Message-Id: <199708261632.KAA17510@pecos.rc.arizona.edu>
To: chemistry@www.ccl.net
Subject: G94 on SGI irix6.4
Mime-Version: 1.0
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Content-MD5: YH3FO8+rxoCC06Cpxend5w==


Has anyone attempted to compile Gaussian 94 on an Origin2000 running
Irix 6.4 and the power compilers?

I am getting a lot of warnings mainly due to duplication of objects
in different libraries and a few about dependences and even a couple
of warnings due to division by zero!!!

This is what I am getting when I try to run the program:

25689:/scr2/jaimeco/g94/g94: rld: Fatal Error: cannot successfully map soname 'u
til.so' under any of the filenames /usr/lib64/util.so:/lib64/util.so:/usr/lib/64
bit/util.so:/lib/64bit/util.so: 


Please reply directly to me and I will send a summary to the list.


jaime Combariza
jaimeco@arizona.edu


From ccl@www.ccl.net  Sun Aug 24 20:19:48 1997
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Date: Sun, 24 Aug 1997 17:05:59 -0700 (PDT)
From: Mark Thompson <mathomps@u.washington.edu>
Message-Id: <199708250005.RAA29000@saul9.u.washington.edu>
To: chemistry@ccl.net
Subject: Summary: software to add Hydrogens to proteins.





Previously, I requested:

> I need to find software that will add
> hydrogens to proteins structures in
> PDB format. It must run on a PC (win95 or NT).

Here is a brief summary of  the responses I received.

I downloaded MSI's WebLab viewer (option B, below) and
really like it.  I still have not tried the other
options.

Thanks again to all who responded.  Your suggestions
were very helpful.

Mark Thompson



A).
Rick Ornstein had a program called Network.  It worked on Biosym car files; so
maybe you could do a translation.  I don't know if it is still maintained by
his group.  Also, it was written for UNIX but could probably be ported to NT.


B)
Try WebLab Viewer 2.0 - available free from MSI at
    http://www.msi.com/weblab/viewer/index.htm


C)
If you have a good Kekule structure available, then PCMODEL (Serena
Software...812-3330823/Gilbert@indiana.edu) should be able to do it.

D)
Dear Mark, Babel (freeware) can add/subtract H atoms to several types of 
files, enclosed PDB files. I've not the exact address of it in mind while 
I'm writing but you may find a link to it in our software page at
http://antas.agraria.uniss.it

E)
This is a very basic feature that probably isn't highlighted because just
about every program can do it.  Chem3D, Macromodel, and Hyperchem are among
the three most-often-mentioned programs on this list, I think.  All of them
can do what you describe.  For more information, see (in order):

http://www.camsoft.com
http://www.columbia.edu/cu/chemistry/mmod/mmod.html
http://www.hyper.com


F)
Check out the Molecular Modelling Toolkit at

    http://starship.skyport.net/crew/hinsen/mmtk.html

It has everything you need to addd hydrogens in reasonable (but not
necessarily energy-minimized) positions to proteins. It's free and
should run on Win95 and NT (but not DOS or Win 3.1 - it needs long
file names), although I have tested it only on Unix systems.





From ccl@www.ccl.net  Mon Aug 25 09:20:01 1997
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From: "Gregor Fels" <GF@chemie.uni-paderborn.de>
Organization:  Universitaet-GH Paderborn FB13
To: chemistry@ccl.net
Date: Mon, 25 Aug 1997 14:43:42 GST
Subject:       VRML
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Dear CCL readers,
we are looking for a way to export Spartan output data to VRML 
format, more precise we would like convert data like the color coding 
of an electrostatic potential or the result of a HOMO- or 
LUMO-presentation to VRML (rather than merely the 
coordinates).

Any suggestion?

Gregor


Dr. Gregor Fels
Universitaet-GH-Paderborn
FB 13-Org. Chemie
Warburgerstr. 100
D-33098 Paderborn, Germany

Tel. 0049-5251-602181/Fax -603245
EMail GF@chemie.uni-paderborn.de


From ccl@www.ccl.net  Mon Aug 25 15:19:59 1997
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Date: Mon, 25 Aug 1997 11:40:21 -0700 (PDT)
From: Mark Thompson <mathomps@u.washington.edu>
Message-Id: <199708251840.LAA14485@saul5.u.washington.edu>
To: chemistry@ccl.net
Subject: Request: PC programs.




Are there any free or low-cost programs
for Win95/NT that will calculate: 
optimized geometries (AM1, PM3, etc),
electronic spectra (INDO/s, etc.),
molecular mechanics (optimized geom, md).

Any information would be appreciated and
will be summarized.

Thanks.




