Subject: Re: CCL:Summary: :Searching thge PDB database using the 3D protein structures

From: Dan Haun <[email-masked]>
Date: Wed, 27 Aug 1997 09:54:49 -0700

Dear Kah-Tong,

You may also visit Interactive Simulation's web site where you can access
MDL's ChemScape Chime where you can search for PDB coordinates.
http://www.intsim.com.  

Cheers,

Dan Haun

At 03:08 PM 8/27/97 +1410, Kah-Tong, Seow wrote:
>My previous request was:
>
>>I would appreciate any help in getting some references or review articles on
>>web servers which provide the service to search PDB database with the 3D
>>protein structure coordinates.
>
>The summary:
>
>1) Accessing the PDB database
>
>http://www.pdb.bnl.gov/
>
>there is a 3D browser, where you can search for structures based on
>their names, authors etc.
>
>Rolf-Dietrich Stigler
>e-mail: [email-masked]
>
>
>I know the web site "http://www2.ebi.ac.uk/pdb/" to find some data using the 3D
>protein structures
>
>
>Nathalie Vancampenhout, Ph.D.
> e-mail: [email-masked]
>
>2) other databases
>
>From: Les Clowney <[email-masked]>
>To: [email-masked]
>Subject: accessing pdb
>
>Hello,
>   You might be interested in the "Protein Finder" available at
>http://ndb.rutgers.edu .
>Les
>
>
>3) Journal articles
>
>Susman, Nature Structural Biology 4(7) 1997 p. 517 or better still
>Stampf et al., Nature 374 (1995) pp. 572-574.
>
>Ed E. Moret
>E-mail: [email-masked]
>
>
>To all who responded, thank you.
>
>one of the servers suggested by friends but not listed above is the Dali Server
>http://www.embl-heidelberg.de/dali/dali.html
>The Dali server is a network service for comparing protein structures in
>3D. You submit the
>coordinates of a query protein structure and Dali compares them against
>those in the Protein Data
>Bank.
>
>Kah-Tong, Seow
>
>
>
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Daniel P. Haun                                Tel:       (619) 658-9462
Interactive Simulations Inc.             Toll Free: (888) 272-8578 
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