From hola@sg1512.chemie.uni-marburg.de  Wed Dec  3 05:38:53 1997
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From: Holger Hermann <hola@sg1512.chemie.uni-marburg.de>
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Dear CCLers,

my question concerns metal-metal interactions in organometallic
compounds.
Has anybody some info, knowledge or references about this topic ?
I'm especially interested in some literature referring to copper-copper
interactions and about a way to perform quantum chemical calculations
that yield reliable results (at least structural data - if possible
interaction energies). 

Thanks a lot in advance.

Holger Hermann
 
********************************************   
Holger Hermann                               
Hans-Meerwein-Str. 	                    
35032 Marburg a. Lahn (Germany)             
Phone: +0049/(0)6421/28-5591  
Fax:   +0049/(0)6421/8917
E-Mail: hola@sg1512.chemie.uni-marburg.de
********************************************

From armel@fluo.univ-lemans.fr  Wed Dec  3 06:38:56 1997
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To: chemistry@www.ccl.net
From: Armel Le Bail <armel@fluo.univ-lemans.fr>
Subject: Re: CCL:M:MJS Dewar died October 10
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Willie Cui wrote:

>I share you respect to Prof. Dewar and feel the lost of him passing
>away.
>
>On your message, you raised a very import point that his contribution
>to chemistry worthy of the Nobel prize.  I am wondering if computational
>chemistry is overlooked by the Nobel prize committee. 

You may look at the computational chemists performances and try to guess
the next Nobel with the ISI's 1000 Most Cited Chemists list :
        http://fluo.univ-lemans.fr:8001/1000chimistes.html

A kind of Pandora box...


Armel Le Bail - Universite du Maine - Laboratoire des Fluorures
CNRS UPRESA 6010 - Avenue O. Messiaen - 72085 Le Mans cedex 9 - France
Web : http://fluo.univ-lemans.fr:8001/

From Krys.Radacki@ac.rwth-aachen.de  Wed Dec  3 10:38:56 1997
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Date: Wed, 03 Dec 1997 15:56:56 +0100
From: Krzysztof Radacki <Krys.Radacki@ac.rwth-aachen.de>
Subject: Re: CCL:Need help English>Polish
In-reply-to: <Pine.A32.3.91.971202211301.41882B-100000@salve5.salve.edu>
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At 21:15 02.12.97 -0500, you wrote:
>Don't the Poles use IUPAC ?  Use Russian if necessary.

We use but language is language not IUPAC and-by the way-polish is not
russian. Are you also sure that names below are IUPAC?


>On Thu, 27 Nov 1997, Richard Essery & Grazyna Oszczygiel wrote:
>
>> I need the Polish for the following substances.   If you can help me I
would
>> really appreciate it.  If not, please forward this request on to someone
who
>> may be able to help.
>> Rich and Grazyna=20

No garanttee.

ethyl isopropyl ketone =3D keton etylowo-iso-propylowy
=20
ethylenediaminetetraacetic acid sodium salt =3D s=F3l sodowa kwasu
	ethylenodiaminotetraoctowego=20
=20
hydroquinone bis(2-hydroxyethyl) ether <=3D Is it IUPAC ?=20
	bis(2-hydroksyetylo) hydrochinon
=20
poly((dimethyl co-methyl-(6-diozo-5,6-dihydro-5-oxo-
	1-naphthylenesulphonylamino)propyl)siloxane) =3D ?=20
	but it shuld be something like:
	poli((dimetylo co-metylo-(6-diozo-5,6-dihydro-5-okso-
	1-naftylenosulfonylamino)propylo)siloksan)

propylene glycol monomethyl ether acetate <=3D It seems that isn't IUPAC.
=20
tert-butylamine borane =3D tert-butyloamino boran

1,3-diamino-2-propanoltetraacetic acid tetrapotassium salt =3D=20
	s=F3l potasowa kwasu 1,3-diamino-2-propanolotetraoctowego=20



           Krzys Radacki

=
 _________________________--------------------------------------------------=
--
 -------------------------   e-mail:       Krys.Radacki@ac.RWTH-Aachen.DE =
 ---
 -------------------------   e-mail:       Krys.Radacki@ac.RWTH-Aachen.DE =
 ---

----------------------------------------------------------------------------
-

From jankowc@umoncton.ca  Wed Dec  3 13:38:58 1997
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From: "CHRISTOPHE JANKOWSKI" <jankowc@umoncton.ca>
Organization: Universite de Moncton
To: chemistry@www.ccl.net
Date: Wed, 3 Dec 1997 13:57:58 -0400
Subject: naming strange compounds , english to polish chemical translatio
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Rich and Grazyna,
I  tried to name some of your compounds as:
1.keton etylowoisopropylowy or keton isopropyloetylowy
2. sol sodowa kwasu etylenodwuaminoczterooctowego
3.eter bis   -  2-hydroksyetylowy hydrochinonu
4.polimer dwumetylo ko metylo ( 6- 
dwuazo-5,6-dwuhydro-5-oxo-naftylenosulfonylamino propylo krzemoianowy 
 ( one can try better - nomenclature of polymers - who invented that 
? ) I think that you have  wrong name diozo is rather diazo , ko 
could be spelled  even in polish co.
5. octan eteru mono metylo propylenowego
6. tert butyloamino boran ( can be named t- insted or trzeciorzedowy) 
7. sol potsowa kwasu 1,3-dwuamino 2- propanolo czterooctowego  or
  1,3-dwuamino 2- propanolo czterooctan potasowy
Best regards
   Chris K Jankowski professor of organic chemistry but 
not necessarily expert in nomenclature of strange compounds

From dapprich@mailer.uni-marburg.de  Mon Dec  1 09:38:33 1997
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Date: Mon, 01 Dec 1997 15:27:40 +0100
From: "Dr. Stefan Dapprich" <dapprich@mailer.uni-marburg.de>
Organization: Philipps University Marburg
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To: Yubo Fan <yubofan@guomai.sh.cn>
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Yubo Fan wrote:
> I am doing geometry optimization of a big molecule. I think it is
> impossible for me to do these jobs for the whole molecule which contains
> over 40 C atoms, so I want to split it into several parts and calculate
> each of them respectively. Then I will put them together. Is this thought
> possible? If possible, could you please give me some advice or reference
> with the same kind of work.

The next Gaussian release will allow you to specify different levels of
theory for different parts of the molecule. You can perform geometry
optimizations as well as frequency calculations at the combined level.
The method is called ONIOM and its implementation will be described in
an upcoming paper. However, you might want to take a look at previous -
slightly different - incarnations of the method (called IMOMM and
IMOMO).
See, for example:
F. Maseras, K. Morokuma, J. Comput. Chem. 1995, 16, 1170.
S. Humbel, S. Sieber, K. Morokuma, J. Chem. Phys. 1996, 105, 1959.
M. Svensson, S. Humbel, R. D. J. Froese, T. Matsubara, S .Sieber, K.
Morokuma, J. Phys. Chem. 1996, 100, 19357.

Hope this helps,
Stefan

-- 

+----------------------------------------------------------------------+
Dr. Stefan Dapprich
Philipps-Universitaet Marburg, FB Chemie
Hans-Meerwein-Str.
D-35032 Marburg
Phone  +49-6421-28-5561
Fax    +49-6421-28-2189
Email  dapprich@mailer.uni-marburg.de

"to be or nut^H^H -- sh^Gt, how do I delete.^?^? Oh No Oh NO^D^D -- How
do I get out of this thing anyway ^C^C^C Kill it ^Z^Z^Z (mumble mumble)
Bus error (core dumped)
+----------------------------------------------------------------------+


From yschickel@beilstein.com  Mon Dec  1 11:38:33 1997
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Frankfurt, Germany -
Beilstein Information Systems' chemical information system
CrossFireplusReactions has been honoured with the 1997 European Information
Technology Prize: a premi=E8re for chemistry.

For further information, please consult http://www.beilstein.com.


From ccl@www.ccl.net  Mon Dec  1 20:38:39 1997
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From: "Dr. Dave Winkler" <Dave.Winkler@molsci.csiro.au>
Subject: SGI O2 modelling benchmarks



Dear Netters,

I have an SGI Indigo 2xl (100Mhz IP22 processor, MIPS R4000 chip, 64 MB
RAM) running Tripos' Sybyl for molecular modelling modelling.  I have to
chance to purchase a low-end O2 machine.  Can anyone give me the likely
'real world' performance improvement (CPU intensive and graphics intensive
tasks) with a given O2 configuration for Sybyl or similar modelling package?

Cheers,

Dave

Dr. David A. Winkler                    Email: dave.winkler@molsci.csiro.au
Senior Principal Research Scientist     Voice: 61-3-9545-2477
CSIRO Division of Molecular Science	Fax:   61-3-9545-2446
Private Bag 10,Clayton South MDC,       http://www.csiro.au
Clayton 3169, Australia 	        http://www.molsci.csiro.au





From jenninaj@mh.uk.sbphrd.com  Tue Dec  2 04:38:44 1997
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From: Andy Jennings <jenninaj@mh.uk.sbphrd.com>
To: Paddy Kane <94970459@tolka.dcu.ie>
Cc: CCL Every <chemistry@www.ccl.net>
Subject: Re: CCL:HyperChem: Incorrect geometries in amines
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On Mon, 1 Dec 1997, Paddy Kane wrote:

> 
>  Hi,

Hi Paddy

> 
>  I am a user of HyperChem, version 4. Whenever I use molecular mechanics
> with the MM+ force field, to geometry optimise molecules such as
> Phenylamine (C6H5NH2), the geometry about the N atom is planar rather than
> pyramidal, i.e., an atom type of N2 is used for the nitrogen atom, rather
> than N3 as would be expected. I get the same result with molecules such as
> H2C=CHNH2 or H2C=NNH2. I also get incorrect geometries if I initially use
> the model builder to obtain an approximate geometry for such molecule or
> if I use any of the other three force fields available within HyperChem.
> If I initially set the atom type for the nitrogen atom to be N3, I still
> get an planar geometry about the nitrogen atom. 
> 
>  However, for molecules such as methylamine and cyclohexamine, i.e., where
> the atom bonded to the nitrogen atom is saturated, the correct geometry
> and atom type are obtained for the nitrogen atom. 
> 
>  Has anyone else experienced this problem?

Unless I'm missing the point here what you see is not a problem - simply
the correct answer. The nitrogen in these systems WILL be planar due to
the pi systems delocalising over all conjugated atoms. This forces the
nitrogen into planarity...something which won't happen with a saturated
system as there is no opportunity for pi orbital delocalisation. Might I
suggest reading something like 'A guidebook to mechanism in organic
chemistry' by Peter Sykes which has an excellent chapter on atomic
orbitals and hybridisation.

Cheers,

Andy

> 
>  I would be very grateful if someone could advise me of how to solve the 
> problem. 
> 
>  Kind rgds,
>  Paddy.
> 
=================================================================
Andy Jennings - SmithKline Beecham Pharmaceuticals
Phone: +44 (0) 1279 627682 Fax:  +44 (0) 1279 627685
-----------------------------------------------------------------
"Statistics are like a bikini. What they reveal is suggestive,but
 what they conceal is vital." - Aaron Levenstein
-----------------------------------------------------------------



From toukie@zui.unizh.ch  Tue Dec  2 07:38:45 1997
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Date: Tue, 02 Dec 1997 13:29:22 +0100
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From: "Hr. Dr. S. Shapiro" <toukie@zui.unizh.ch>
Subject: Replies re (bio)membrane orderliness
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Dear Colleagues:

	A couple of weeks ago I posted a request on CCL for reviews and/or recent
articles on the subject of (bio)membrane orderliness/disorderliness,
particularly bacterial membranes.  The useful responses which I received
were as follows:

						

Which is to say, I received a lot of requests for summaries of the
responses, but sad to say no responses were forthcoming.

Sincerely,

S. Shapiro
toukie@zui.unizh.ch 



From Darren.Simpson@unisa.edu.au  Wed Dec  3 18:42:33 1997
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Date: Thu, 04 Dec 1997 09:58:16 +1030
From: Darren Simpson <Darren.Simpson@unisa.edu.au>
Subject: Electronic configuration of Co :Summary
To: "'chemistry@www.ccl.net'" <chemistry@www.ccl.net>
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 <5DA42F8A3C18D111979400AA00DD609D0F8BA9@EXSTAFF3.Levels.UniSA.Edu.Au>
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Hello CCL members,

A week or so ago, I posted a message regarding the electronic
configuration of Co in cobalt oxide.  Although I only received a few
responses, I did receive an answer to my question.  My question posted
to CCL was:

>For CoO, the electronic structure is more complex because Co (d7) can
>adopt a high-spin (3 unpaired d electrons) or low-spin (1 unpaired d
electron)
>state.  However I am unsure of the electronic structure in the bulk and
at the
>surface/boundary of the CoO cluster.  Does, Co adopt a low-spin state
at the
>surface and high-spin in the bulk?  Any advice, information, references
etc on
>this topic is welcome .

Thank you to the following people for their responses.  It was pointed
out that by Andrei Tchougreeff that Co adopts high spin for both the
bulk and at the surface/boundary in CoO.

Darren Simpson


------------------------------------------------------------------------
----------------------------------------
From: Andrei L. Tchougreeff <andrei@cc.nifhi.ac.ru>

Dear Darren, 

there is a good number of works devoted to the electronic
states of the surface Ni and Co ions in respective oxides
both experiments and theory. In plain words, the states
of the both are always high-spin - in the bulk and on the 
surface. But details may be rather confusing. You can 
have a look at our work done recently in the effective 
crystal field approximation which uses rather big clusters
cut from these (and other) oxides. It is posted on the net: 

http://inet.keldysh.ru/CompChem_Ctr/PUBL/HTML/1997_002/1997_002.html

An older work dealing with smaller clusters in the same 
approximation is published: 

J. Mol. Catal. 119 (1997) 377

If you have any questions, do not hesitate contacting me -
I will be glad to help you. 

Regards, 

Andrei L. Tchougreeff

------------------------------------------------------------------------
----------------------------------------
From:  Ashraf Talib Al-Hinai <ashraf@psu.edu>

Your question is very hard to answer. I guess the safest way to find out
is to carry out your calculations using one size of basis set optimized
for the different (common) configurations of the Co atom . We tried
this some time ago during calculations on Ni(II) complexes.

I think you will find the basis sets you need in the literature or on
the web , if you don't, you can always do exponent optimization, i know
gamess can do this .

ashraf@psu.edu

------------------------------------------------------------------------
----------------------------------------
From:  Jason Lye <jlye@tx.ncsu.edu>

Hi Darren

You asked an interesting question.  You may have seen some recent
discussions,
and realised that I am interested in predicting the spin of iron III
complexes,
so I would be very interested in seeing any responses that you get.  I
used
magnetic susceptibility to measure the spin of my complexes, but this
would not
technique would not help you much.

Sorry that I am unable to help.  Please post a summary,

Jason

------------------------------------------------------------------------
----------------------------------------
From:  Pat Hogue <PHogue@space.honeywell.com>

     I have an interesting observation to relate regarding NiO.  

     I was interested in determining whether the strength of Lewis acid
surface site probe diethylamine (DEA) or the Bronsted acid surface site
probe pyridine (Py) correlated with reactivity of hot perfluoropolyether
(PFPE) .  I looked at a range of metals and their oxides, as well as
some ceramics, all as fine powders in contact with PFPE in a
differential scanning calorimeter (DSC) sample cup.  

     It turns out that both DEA and Py desorbed at the Neel temperature
(like the Curie temp. except for an antiferromagnetic material) of NiO
in a rather remarkable fashion.  This was observed using DSC.  I did not
persue the matter but found it interesting, and think it is indicative
of some sort of surface change that released the adsorbed surface
probes.  I used the semiempirical program GEOMOS obtained from QCPE.
Sorry to say I dumped all my output.  I do not recall anything unusual
in terms of HOMO, LUMO or other parameters.

Cheers

Pat Hogue
Materials and Processes Engineering
Honeywell Satellite Systems Operation
Glendale, Arizona

------------------------------------------------------------------------
----------------------------------------

Ian Wark Research Institute
University of South Australia
The Levels, SA 5095
Australia

Email: darren.simpson@unisa.edu.au





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From: Willie Cui <info@microsimulations.com>
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Armel,

I took a quick look of the list and surprised to find that Allinger, NL
is not on the list. I know that his paper on MM2/MM3 are widely cited.

In my own experience, I found the work of Allinger, Pople J, and Dewar
have most profound and practical impact on the modern computational
chemistry. The amount of insight, work, and care that went into the
three packages, MM2/MM3, Gaussian, and AMPAC/MOPAC, are just tremondous.
It will be of great excitment that they get Nobel prize.
It is not too late for Allinger and Pople yet.



Armel Le Bail wrote:
> 
> Willie Cui wrote:
> 
> >I share you respect to Prof. Dewar and feel the lost of him passing
> >away.
> >
> >On your message, you raised a very import point that his contribution
> >to chemistry worthy of the Nobel prize.  I am wondering if computational
> >chemistry is overlooked by the Nobel prize committee.
> 
> You may look at the computational chemists performances and try to guess
> the next Nobel with the ISI's 1000 Most Cited Chemists list :
>         http://fluo.univ-lemans.fr:8001/1000chimistes.html
> 
> A kind of Pandora box...
> 
> Armel Le Bail - Universite du Maine - Laboratoire des Fluorures
> CNRS UPRESA 6010 - Avenue O. Messiaen - 72085 Le Mans cedex 9 - France
> Web : http://fluo.univ-lemans.fr:8001/
> 
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-- 
Willie Cui			voice: 201-512-0486
MicroSimulations		fax:   201-512-0489
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