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Work group Theoretical Chemistry within the Austrian Chemical Society

PLEASE NOTE:

-------------------------------------------------------------------------

      Workshop on Computational Chemistry in Mariapfarr
                           May 31  - June 2, 1999
                      Mariapfarr, Salzburg, Austria
-------------------------------------------------------------------------

The first objective of this workshop is to disseminate knowledge about
computer experiments, their connection to "real" experiments, their
advantages but also their drawbacks to scientists interested in
computational chemistry. Another objective is
the discussion of the physical background (classical mechanics,
statistical physics) and the concepts of important simulation techniques
such as molecular dynamics and Monte Carlo. Finally computational
details of these techniques as well as data
analysis are discussed.

Invited Speakers: G.G. Balint-Kurti, G.D. Billing, R. Jaquet, U. Manthe

For further information see

http://majestix.msp.univie.ac.at/atcc.html

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  Althanstr. 14                   A-1090 Vienna                       =
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From chemistry-request@www.ccl.net  Tue Feb  9 07:58:11 1999
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Date: Tue, 9 Feb 1999 17:34:48 +0500
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Dear CCLers,

I have did comparison between various implementations SCF method in PC GAMESS:
Direct, simply Conventional and Conventional with AO integral packing.
I have graphed the relation between SCF time and number of carbon atom
in hydrocarbons chain, and between SCF time and number of AO integral.
Also I have calculated scales for they.
You can see results and diagrams on my pages:

http://members.tripod.com/~RedAndr/bench/

Sincerely, Andrew.

   /===============================================\
   | E-mail:    RedAndr@anrb.ru                    |
   |            RedAndr@usa.net                    |
   | WWW:       http://members.tripod.com/~RedAndr |
   +-----------------------------------------------+
   |            Institute of Organic Chemistry     |
   |            Ufa Research Center                |
   |            Russian Academy of Sciences.       |
   \===============================================/



From chemistry-request@www.ccl.net  Sat Feb  6 22:34:37 1999
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Date: Sun, 07 Feb 1999 11:21:34 +0800
Subject: 情爱文学
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　　《下场》：
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着；小时候那个让我意识到自己的丑陋的女人不期然地
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　　......
　　欢迎光临田柯情爱文学网\[2M<3(J[*_TL*W_J.LQ[_0T-6\T]#!RPT*SM*UQ,GMS.6AH]3:
MR_O'O]#0O?C(Z[7$Q,?2N\FRQ,>CK,[2M<31V\#AP??!R[/V#0K`M"XN+L3'
MN/:TNLSLHZS(_</[Q-"T\]&GR?K"UKSIP<O+^\/'M<3-K,_GHZS2N\Z[#0K%
MKK3ST:?)^BXN+K&OON?2T;ZMMZ+)^L'+HZS+^\/'O:O(Y[K.P^:VU*._L:^^
MYPT*S_+7Q;C\SJJQK[[GNZ^UQ+>]S_*WHM6YHZS*Q]+RSJK(R]#4L;ZV\:.L
MN[G*Q]+R#0K.JLC+T-2UQ,6SR/6COPT*H:&AH:&VML#7U-3:O-*AMZ.Z#0JA
MH:&AQM[7T[[VMJC`Z[^JO-*\N,SLHZS.TK_)TM2VP-?4TKO(R[3TU-J\TM;0
MH:,-"M7BT?FUQ,JQNO*CK,[2Q-RXR="IRK+#M,38+BXNSM+2N[#1QLNY_<BE
MHZR]J]"D#0JZ[-&YM;W!R\GMS\*AH]"DNNRUQ-+"M_[4VL[2M<3)[<_"L;O2
MN[S^TKN\_K78L_T-"K7TH:.UL<[2L-'*ULGLS_++_;7$L;.Z\Z.LU[RQN+/]
MR*70I+KLR<_)[;WVRJ//P@T*M<32N]:[T-C5ULJQHZS0I+KLT\/*UK6RUZ'!
MRRXN+@T*H:&AH:&VT-?&]Z&WH[H-"J&AH:'2N[3.S;7'Z:.LTKNPT=BPRM>C
MK-7BN/:YRLK"P._3IKC#N[G3T,JRP[3$V`T*H[\-"J&AH:$N+BXN+BX-"J&A
MH:&[MM.MN>+!V<SOO\+'Z;"NSL31I\WXTK,-"J&AH:%H='1P.B\O=&EA;FME
)+GEE86@N;F5T
`
end
 




From chemistry-request@www.ccl.net  Sun Feb  7 18:01:18 1999
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Message-ID: <002401be52ed$4345fea0$09007a81@hnlsyd8>
Reply-To: "Dr Huang" <showing@bigfoot.com>
From: "Dr Huang" <showing@bigfoot.com>
To: "Roy Jensen" <royj@uvic.ca>
Cc: <chemistry@www.ccl.net>
Subject: Re: Polar 3 for Windows: electrochemical simulation and data analysis
Date: Mon, 8 Feb 1999 09:57:39 +1100
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Thanks for your forward. The required dll,
msvbvm60.dll, is inside simvb6-3.zip
at the reference supplied on my web site:
http://www.simtel.net/simtel.net/win95/dll.html

*************************************************
* Dr Weiguang Huang,   BS, MS, PhD, MACS *
* 124 Eastern Avenue, Kingsford   *
* Sydney, NSW 2032, Australia   *
* Phone: 61 2 96620516 (h), 0413 008 019 *
* email: showing@bigfoot.com, showing@fcmail.com*
* http://www.bigfoot.com/~showing/  *
* http://www.bigfoot.com/~VisualMath/  *
*************************************************

-----Original Message-----
From: Roy Jensen <royj@uvic.ca>
To: showing@fcmail.com <showing@fcmail.com>; showing@bigfoot.com
<showing@bigfoot.com>
Date: Sunday, 7 February 1999 17:49
Subject: Polar 3 for Windows: electrochemical simulation and data analysis


>Dr. Weiguang HUANG
>
>I forwarded your post on CCL to several of my colleagues in the
>position to teach electrochemistry. However the required dll,
>msvbvm60.dll, is not at the reference supplied on your web site:
>http://www.simtel.net/simtel.net/win95/dll.html
>
>I have found the file by searching YAHOO but you may want to post an
>alternate location of this dll to the CCL.
>
>Roy Jensen
>
>



From chemistry-request@www.ccl.net  Mon Feb  8 11:35:21 1999
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Subject: optical activity prediction: SUMMARY
To: CHEMISTRY@www.ccl.net
Date: Mon, 8 Feb 1999 11:34:48 -0500 (EST)
From: "Prof. Robert Topper" <topper@cooper.edu>
Cc: topper@cooper.edu (TOPPER ROBERT), bove@cooper.edu (BOVE JOHN)
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Greetings to all the CCL subscribers,

I'd like to thank everyone who responded to the following question about
predicting the optical rotation of an enantiomer, and thence the
optical activity of a mixture of enantiomers.

A summary of the responses is attached. I've only included responses
which directly provided information relevant to the question, but
I am also grateful to those who responded but have not been included.

Gratefully yours,
Robert Topper

*****************************************************************************
Prof. Robert Q. Topper                  email:   topper@cooper.edu
Department of Chemistry                 phone:   (212) 353-4378
The Cooper Union                        fax:     (212) 353-4341
51 Astor Place                          subway:  take the 6 to Astor Place 
New York, NY 10003                               and you're there!
                 http://www.cooper.edu/engineering/chemechem/
*****************************************************************************
xxxxxxxxxxxxxxxxxxxxxxxxxx
Original question:

An organic chemist with whom I collaborate has asked me
whether it is possible to predict the optical activity
of a mixture of enantiomers, even semiquantitatively.
(i.e., is the optical activity "big" or "small" for
a given enantiomeric excess, or e.e.).

My own search of the Internet has failed to turn up anything.
Can anyone give us any suggestions? 

xxxxxxxxxxxxxxxxxxxxxxxxxx

From: "Dr. Mike Gilson" <gilson@indigo14.carb.nist.gov>

I don't know how far along things are, but
this topic was discussed in a recent C&E News.
I am pretty sure the work came from Beratan's
group at Pittsburgh.

Good luck,

Mike
------------------------------------------------------------------------------
Michael K. Gilson, Ph.D., M.D.                         Phone:   (301) 738-6217
Center for Advanced Research in Biotechnology          Fax:     (301) 738-6255
National Institute of Standards and Technology
9600 Gudelsky Drive	        http://www.carb.nist.gov/carb/gilson.html
Rockville, MD  20850-3479       e-mail: gilson@carb.nist.gov
------------------------------------------------------------------------------

xxxxxxxxxxxxxxxxxxxxxxxxxx
From: James T Metz <METZ_JAMES_T@LILLY.COM>

Robert,

     See Kondru, R.K. et al. JACS (1998) 120, 2204.  The ab initio program
DALTON was used to estimate optical activity for chiral fragments of a natural
product by calculation of the electric dipole magnetic dipole polarizability
tensor.

                              Jim Metz
                              Metz_James_T@Lilly.com
xxxxxxxxxxxxxxxxxxxxxxxxxx
From: "James G. Macmillan" <macmillan@uni.edu>
(First of two messages)

Robert,

Is the question "Can you predict the rotation of a chiral molecule from it's
structure?" or "Can you predict the rotation of a mixture of enantiomers?"?

The first question is very difficult and I can not help you with it.  I
believe there are theoreticians working on the problem but I am not up on
how good they have gotten in predicting rotation of chiral molecules.

The second question is straight forward.  The rotation of a mixture of
enantiomer is given as the sum of the rotation of each enatiomer times its
mole fraction. I am sure you know this.  It would mean for an enantiomer
with a rotation of +20 that contained 20% the other enantiomer the solution
rotation would be .2 (-20) + .8 (+20) = +12.  Of coarse, a 50/50 mixture
would have zero rotation. .5(-20) + .5(+20) = 0.

Jim

> From: TOPPER ROBERT [mailto:topper@cooper.EDU]
>
>
> Yes, the former. Or, said another way, how can you predict the
> ROTATION of a particular enantiomer? (+20 and -20 in your example).
>
> robert
>

From: "James G. Macmillan" <macmillan@uni.edu>
(Second of two messages)

Robert,

That is a tough one.  The octant rules (Introduction to Organic
Spectroscopy; J. B. Lambert, H. F. Shurvell, D. Lightner, and R. G. Cook;
page 271- 274, Macmillan Pub. Co. 1987) allow you to make a prediction on
the sign of the CD curve.  These rule can also be found in C. Djerassi,
Optical Rotatory Dispersion, McGraw Hill, New York, 1960.  Again, these are
empirical rules not theoretical based.

Jim
**********************************************
James G. Macmillan, Ph.D.
Department of Chemistry
University of Northern Iowa
Cedar Falls, IA 50614-0423

Ph: (319) 273-2476 FAX: (319) 273-7127
E-mail: macmillan@uni.edu
ICQ: 10405682
********************************************
"Where good wine flows so does good conversation"

xxxxxxxxxxxxxxxxxxxxxxxxxx

From: Karl Irikura <karl.irikura@nist.gov>

Hi.  Have you checked recent papers by Dave Beratan?  I think he has
had some success, using CADPAC as the basic tool.

Good luck,

Karl I.

----------------------------------------------
Dr. Karl K. Irikura
National Institute of Standards and Technology
100 Bureau Drive, Stop 8380
Gaithersburg, MD  20899-8380
voice: 301-975-2510	fax: 301-869-4020
e-mail: karl.irikura@nist.gov
http://www.nist.gov/compchem/
----------------------------------------------
xxxxxxxxxxxxxxxxxxxxxxxxxx
From: Iraj Daizadeh <daizadeh@fas.harvard.edu>

Dear Professor Topper:

I refer you to a recent paper from a group from U-Pitts; references for
the question you pose may be addressed there.  If not; the paper is still
a very good read.

Kondru, RK; Wipf, P; Beratan, DN.
Atomic contributions to the optical rotation angle as a quantitative probe
of molecular chirality. SCIENCE, 1998 DEC 18, V282 N5397:2247-2250.

Best regards,

Iraj.

Iraj Daizadeh, Ph. D.
Harvard University
Department of Cellular and Molecular Biology
The Biological Laboratories, Box #140
16 Divinity Avenue
Cambridge, MA 02138
Phone: (617) 495-0783
       (617) 495-0560
Fax:   (617) 496-4313
Email: daizadeh@fas.harvard.edu

xxxxxxxxxxxxxxxxxxxxxxxxxx
From: cramer@pollux.chem.umn.edu (Christopher Cramer)

Robert,

Beratan at Pitt has published on prediction of optical rotations. 
Several references are on his web page
(http://www.chem.pitt.edu/faculty/beratan.html)

Chris

Christopher J. Cramer
University of Minnesota
Department of Chemistry
207 Pleasant St. SE
Minneapolis, MN 55455-0431
--------------------------
Phone:  (612) 624-0859 || FAX:  (612) 626-2006
cramer@pollux.chem.umn.edu
http://pollux.chem.umn.edu/~cramer
xxxxxxxxxxxxxxxxxxxxxxxxxx

From: "Christoph M. Koelmel" <koelmel@intsim.com>

Hi,

enantiomers have opposite specific rotations (rotation angle normalized
with respect to length of path light has to go through and concentration
of the substance that is optically active), and if one assumes small concentrations, the 
rotation angle is then just proportional to the 
difference of the concentrations of the two enantiomers, I would think.

http://www.scimedia.com/chem-ed/spec/molec/polarim.htm might be useful.

A different question is how to compute the specific rotation for an
enantiomer. 

The DALTON program site, e.g. at http://ithaka.ki.ku.dk/QC/dalton/Master.html
may be a useful starting point.

Cheers,

Christoph
xxxxxxxxxxxxxxxxxxxxxxxxxx
From: Huub van Dam <h.j.j.vandam@dl.ac.uk>

Hello Robert,

As far as I know the optical activity of a mixture of enantiomers is just a
linear interpolation of the optical activities of the pure enantiomers. Here
optical activity means the amount by which the plane of polarisation of linearly
polarised light is rotated by the optical active species.

Another measure is related to circulardichroism. In this case the spectra of
enantiomers are measured using circularly polarised light. Depending on the
enantiomer and the direction of polarisation the spectra show remarkable
differences.

The circulardichroism spectra can be calculated by a few programs. For example
Stefan Grimme has a DFT code that seems to obtain very accurate results, his
webpage is at

    http://pcgate.thch.uni-bonn.de/tc/grimme.html

you may want to look up a few of his papers.

Kind regards, Huub van Dam

=============================================================

Huub van Dam                               E-mail: h.j.j.vandam@dl.ac.uk
CCLRC Daresbury Laboratory                  phone: +44-1925-603362
Daresbury, Warrington                         fax: +44-1925-603634
Cheshire, UK
WA4 4AD

=============================================================
xxxxxxxxxxxxxxxxxxxxxxxxxx

From: "Dr. S. Shapiro" <toukie@zui.unizh.ch>
Dear Sir;

     There are all sorts of rules relating to the prediction of optical activity
of enantiomers.  Some of these you may find in Caldwell & Eyring's "The Theory
of Optical Activity", though this is rather dated.  From what I remember the
best predictions of optical activity are in the IR range rather than, say, at
the sodium D-line.  For further details, please consult a brief review article
in Enantiomer 1: 151-166 ('96), an article entitled "Chemical and spectroscopic
methods for determining absolute configurations of chiral alcohols".

Tschuess,

S. Shapiro
toukie@zui.unizh.ch

xxxxxxxxxxxxxxxxxxxxxxxxxx
From: "Frank J. Devlin" <devlin@usc.edu>

Hi Robert,

Take a look at Beratan's article in Science, 282, 2247 (1998).

Regards,

Frank Devlin.
xxxxxxxxxxxxxxxxxxxxxxxxxx

From: Craig Burkhart <cburkhart@goodyear.com>

Robert,

There was an article in a recent Chemical & Engineering News (within the last
month) where there was a brief about the calculation of absolute optical
rotation. To my knowledge, this was the first ab initio ("ab initio" in this
sense not necessarily meaning quantum chemical) prediction of optical rotation.

This has been a topic that has come up, off-and-on, throughout the last few
years. I have always said, "I don't know how to do that"; but it appears that it
may now be possible. So rifle through your most recent C&E News magazines and
you will find it (or search for it online on the ACS web site).

Craig

xxxxxxxxxxxxxxxxxxxxxxxxxx
From: Ricardo Nunez <rnunez@dali.eis.uva.es>

Dear all,
	Our group have developed a method to calculate the
optical activity from molecular geometry, I give you some
references:

J. Mol. Struct., vol. 354, (1995) 81-87
J. Mol. Struct., vol. 442, (1998) 135-143
J. Mol. Struct., vol. 447, (1998) 127-133


Ricardo Nunez Miguel
rnunez@sorolla.eis.uva.es
Departamneto de Quimica Organica
ETS de Ingenieros Industriales
Universidad de Valladolid
Spain





From chemistry-request@www.ccl.net  Mon Feb  8 15:23:37 1999
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  Dear netters:

  Is there any program which is able to calculate (separately) the sigma
  and pi contributions to the total electronic charge within the context
  of a Bader's population analysis?

  Thamks in advance



					Daniel Glossman

					glossman@overnet.com.ar



From chemistry-request@www.ccl.net  Mon Feb  8 15:28:02 1999
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Date: Mon, 08 Feb 1999 17:24:07
To: chemistry@www.ccl.net
From: "Dr. Daniel Glossman" <glossman@overnet.com.ar>
Subject: Pop=Bonding calculation
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 Dear sirs:

 I have been doing some G94W calculations on several molecules with the
 POP=Bonding keyword, but I don't know how to do an interpretation of 
 the results and the Gaussian 94 manual is not very informative in this
 respect.

 For example, after the title "... Condensed to atoms (all electrons..."
 I got a symmetric matrix with diagonal elements equal to zero. 

 1) What do the numbers mean?
 2) Where do they come from?
 3) Are they related to the so called bond order analysis?
 4) Are there any bibliographic references for the calculation of these
    numbers?

 After that I got the total atomic charges. These charges are different
 from those coming from a traditional Mulliken population analysis in 
 that they are not summed up to the charge of the molecule under study.
 
 Again, 1) What do these charges mean?
 2) What's the meaning of the summation?
 3) Where do these numbers come from?
 4) which are the bibliographic references?


 Thanks in advance for a kind consideration of this request.

 Best regards



					Dr. Daniel Glossman

*****************************************************************************
 Universidad Nacional de Lujan
 Departamento de Ciencias Basicas	e-mail: glossman@overnet.com.ar
 Casilla de Correo 221			phone: (+54) 1 5533797
 (6700) Lujan				fax: (+54) 1 5539824
 Republica Argentina 

****************************************************************************
**



From chemistry-request@www.ccl.net  Mon Feb  8 15:34:05 1999
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Date: Mon, 08 Feb 1999 12:26:32 -0800
To: chemistry@www.ccl.net
From: David Gallagher <dgallagher@fujitsu.com>
Subject: UK Seminar: Computer-Aided Chemistry
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*  Computer-Aided Chemistry for the Experimentalist
   UK Seminars: 23, 24, 25 February 1999 (10.00-13.00)
     - 23rd: Stockley Park, Uxbridge (London)
     - 24th: Univ. of Warwick Science Park, Coventry 
     - 25th: Cambridge Science Park, Cambridge
New tools that enable the chemist to calculate properties of both small and
large molecules (e.g. proteins, DNA, crystals, polymers, etc.) in solution
on both UNIX and Windows-based personal computers, are becoming available
through recent developments in quantum mechanics (QM). The seminar will
review a range of chemistry applications that can be addressed by these new
tools, including prediction of physical, chemical and biological properties
such as UV-visible & IR spectra, reaction pathways, thermodynamics &
kinetics, non-linear optics, water solubility, vapor pressure,
carcinogenicity, etc. Application of these new tools to Quantitative
Structure-Property Relationships (QSPR & QSAR) will also be discussed.
Recent QM algorithm developments and breakthroughs will be reviewed by
guest speaker, Dr. J. J. P. Stewart (author of MOPAC). Examples of
intuitive new graphical interfaces (e.g. WinMOPAC) that make these
productivity tools easy to use by experimental chemists, and ideal for
education, will be demonstrated. Some SW on CD will be available free to
attendees. The seminars are sponsored by Fujitsu and attendance is free. If
you are unable to attend, you may request the seminar proceedings packet.

Details and registration from: Ms. Renee Williamson, Fujitsu Systems
Limited, 2 Longwalk Road, Stockley Park, Uxbridge Middlesex, UB11 1AB. Tel
0181 606 4566, Fax 0181 606 4580, E-mail: renee@fujitsu.co.uk

====================================================================
 David A. Gallagher, C. Chem.        email: dgallagher@fujitsu.com


From chemistry-request@www.ccl.net  Tue Feb  9 16:55:49 1999
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To: chemistry@www.ccl.net
Subject: Different molecular weights question....
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Hello, 
	My dilemma is this:  I am following a procedure that calls for 0.291
grams of Antimony Potassium Tartrate [K(SbO)*C4 H4 O6 *1/2 H2O] to be
dissolved in 100 ml of water.  The substance that I HAVE is Antimony
Potassium Tartrate, but with a formula of (C8 H4 K2 012 Sb2 * 3 H2O). 
How much of the latter substance do I need to add to 100 ml of water to
obtain a solution of the same concentration?
	For your information: The molecular weight of the first compound is 334
and the latter is 668.  I know its a stupid question but it has me
stumped!  Any help is appreciated........SMB>

