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Dear CCLers,

does anybody have a free MOPAC6 version, which

1) run on Intel/WinNT
2) does optimization AND force (mopac 6/NBO does not)
3) writes graph-files (I get fileio-errors)

and perhaps also

4) CIS and CISD (not only CI)
5) NBO analysis
6) ESP
7) FF hyperpolarizabilities

Points 1-3 should at least be fulfilled. The only version I got which
writes graph-files run on Win95.
I need the program for a student course and would be glad for any hints.
-- 
                                Andreas Goeller

---------------------------------------------------------------
   Dr. Andreas Goeller       Institut fuer Physikalische Chemie
                               Friedrich-Schiller-Universitaet
                                       Lessingstr. 10
phone: +49(0)-3641-948352               D-07743 Jena
  fax: +49(0)-3641-948302 (secretary)     Germany
email: goeller@pc04.chemie.uni-jena.de
http://www.uni-jena.de/chemie/photo/goeller/goeller.html
---------------------------------------------------------------
   Dr. Andreas Goeller   ehemals Computer Chemie Centrum

email: goeller@organik.uni-erlangen.de
http://www.organik.uni-erlangen.de/clark/goeller/goeller.html
---------------------------------------------------------------
From chemistry-request@server.ccl.net  Tue May  4 05:21:44 1999
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From: "Andrzej Szymoszek" <ASZYM@WCHUWR.CHEM.UNI.WROC.PL>
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To: chemistry@www.ccl.net
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Subject:       CCL: biphenyl derivatives ab initio
Priority: normal
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  Ladies and Gentlemen:  I am looking for published ab initio
 results for such derivatives of biphenyl as 2,2'-difluorobiphenyl,
 2,2'-dichlorobiphenyl and others, subsitituted in positions
 ortho and/or meta. The energy dependence of the torsional
 angle between the phenyl rings is of particular interest.
 Any suggestions?
 
  Sincerely,
  
  Andrzej Szymoszek
  
  aszym@wchuwr.chem.uni.wroc.pl
  Chemistry Department
  University of Wroclaw, Poland 
From chemistry-request@server.ccl.net  Tue May  4 09:44:13 1999
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Date: Tue, 04 May 1999 09:34:44 -0400
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From: "W. R. Smith" <support@mathtrek.com>
Subject: Re: CCL:program for equilibria
In-Reply-To: <"372DBF86.10DD.4908.000*Creve_Steven_SJR//RESEARCH/NL/400n
 et/DSM"@MHS>
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Have a look at EQS4WIN, a free Lite version of which is available from our
web site below.

It can handle many types of equilibrium problems from a wide variety of fields.

If you have further interest or questions, please contact me privately.

At 05:32 PM 5/3/99 +0200, you wrote:
>Hi,
>
>does anyone know about a program to calculate the equilibrium composition of a
>mixture of about 5-10 compounds, where the K's, DeltaG's, ... are known.
>(In fact, this is a straightforward calculation task, but it would be nice if
>a simple program is at hand...)
>Regards,
>Steven Creve
>
>-= This is automatically added to each message by mailing script =-
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>


-- W. R. Smith, PhD, P. Eng., Senior Scientist, Mathtrek Systems --
3-304 Stone Road West, Suite 165, Guelph, Ontario CANADA N1G 4W4
EMail: support@mathtrek.com       Tel:519-763-1356,FAX:519-763-4525
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From chemistry-request@server.ccl.net  Mon May  3 08:15:54 1999
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From: Armel Le Bail <alb@cristal.org>
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ESPOIR is a Reverse Monte Carlo code for ab initio crystal 
structure determination by fittting to "|Fobs|" extracted by 
powder diffractometry.

Improvements in the new release, ESPOIR 1.0, include :

- Choosing any space group, not only P1. 
- Annealing by reducing progressively the amplitude of atom moves. 
- Accepting events that do not improve the fit that helps not getting 
               trapped in false minima. 
- Restarting automatically when false minima still exist. 
- Optimization of the |F| calculation, saving time. 
- New examples including the SDPD Round Robin sample I 
          [Co(NH3)5CO3]NO3.H2O, and cimetidine C10H16N6S.

               http://www.cristal.org/sdpd/espoir/                (USA) 
or           http://pcb4122.univ-lemans.fr/sdpd/espoir/   (France)

Good luck !


Armel Le Bail - Universite du Maine, Laboratoire des Fluorures,
CNRS ESA 6010, Av. O. Messiaen, 72085 Le Mans Cedex 9, France
http://www.cristal.org/

From chemistry-request@server.ccl.net  Mon May  3 22:13:13 1999
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Date: Mon, 3 May 1999 19:12:21 -0700 (PDT)
From: jackie jackson <jackie_jacky@yahoo.com>
Subject: G98: Error permuting atoms in Fill
To: chemistry@ccl.net
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Hi, all,
Anybody ever got the following error messge when you
run gaussian with a highly symmetric molecule?
Any suggestions welcome.

 Error permuting atoms in Fill, LPerm:
   0   0   0   0   0   0   0   0   0   0
   0   0   0   0   0   0   0   0   0   0
 Symmetry turned off:
 Internal error in symmetry package.  

Thank you for your time.

Jackie   
_________________________________________________________
Do You Yahoo!?
Get your free @yahoo.com address at http://mail.yahoo.com

From chemistry-request@server.ccl.net  Tue May  4 10:23:58 1999
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Date: Tue, 4 May 1999 09:19:28 -0500 (CDT)
From: "Fred P. Arnold" <fparnold@balihai.uchicago.edu>
To: Computational Chemistry List <chemistry@www.ccl.net>
Subject: MPQC
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Hello,

We've recently found the program MPQC (Massively Parallel Quantum
Chemistry) by Curtis Janssen, et al., and some of the researchers (read:
graduate students) expressed an interest in it, due its support for
distributed parallel architecutures using MPI, excellent (theoretical)
scaling, and the use of the GNU Public License. (We have a strong Debian
movement at U. of C.)

However, the code seems to have frozen two years ago, the C++ is already
succumbing to software rot, and the authors are uncontactable.  Has anyone
done any work on this package, or know its present status?  Under the GPL,
we could theoretically start banging on it (at least move it from libg++
to libstdc++), but I'd like to know what its authors' plans are first.

							-Fred 

  Sb: Antimony                   Frederick P. Arnold, Jr.  
    Mass: 121.75                 Advanced Research Systems@U. Chicago      
    MP: 630.5 Deg C              5640 S. Ellis Ave             
    Electronegativity: 1.82      Chicago, IL 60637             

From chemistry-request@server.ccl.net  Tue May  4 11:01:03 1999
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To: Andreas Goeller <goeller@pc04.chemie.uni-jena.de>
CC: chemistry@www.ccl.net, JStewart@fujitsu.com
Subject: Re: CCL:mopac6/NT
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MOPAC_2000 will do all that you ask, and on large systems.  I have easily run a
Lipase molecule (4100 atoms) in parallel under MPI on SGI O2K and an PC/NT cluster,
also with MPI.  MOPAC_2000 code is distributed by (yes!) Schroedinger, Inc.
(help@Schroedinger.com)


John McKelvey

Andreas Goeller wrote:

> Dear CCLers,
>
> does anybody have a free MOPAC6 version, which
>
> 1) run on Intel/WinNT
> 2) does optimization AND force (mopac 6/NBO does not)
> 3) writes graph-files (I get fileio-errors)
>
> and perhaps also
>
> 4) CIS and CISD (not only CI)
> 5) NBO analysis
> 6) ESP
> 7) FF hyperpolarizabilities
>
> Points 1-3 should at least be fulfilled. The only version I got which
> writes graph-files run on Win95.
> I need the program for a student course and would be glad for any hints.
> --
>                                 Andreas Goeller
>
> ---------------------------------------------------------------
>    Dr. Andreas Goeller       Institut fuer Physikalische Chemie
>                                Friedrich-Schiller-Universitaet
>                                        Lessingstr. 10
> phone: +49(0)-3641-948352               D-07743 Jena
>   fax: +49(0)-3641-948302 (secretary)     Germany
> email: goeller@pc04.chemie.uni-jena.de
> http://www.uni-jena.de/chemie/photo/goeller/goeller.html
> ---------------------------------------------------------------
>    Dr. Andreas Goeller   ehemals Computer Chemie Centrum
>
> email: goeller@organik.uni-erlangen.de
> http://www.organik.uni-erlangen.de/clark/goeller/goeller.html
> ---------------------------------------------------------------
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From chemistry-request@server.ccl.net  Tue May  4 11:24:59 1999
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Date: Tue, 4 May 1999 11:09:10 +36000
From: Richard Wood <dmpc@hugh.chem.uic.edu>
To: Andrzej Szymoszek <ASZYM@WCHUWR.CHEM.UNI.WROC.PL>
cc: chemistry@www.ccl.net
Subject: Re: CCL:biphenyl derivatives ab initio
In-Reply-To: <63B6E2E2C@wchuwr.chem.uni.wroc.pl>
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All I can say is good luck.

Richard

On Tue, 4 May 1999, Andrzej Szymoszek wrote:

> 
>   Ladies and Gentlemen:  I am looking for published ab initio
>  results for such derivatives of biphenyl as 2,2'-difluorobiphenyl,
>  2,2'-dichlorobiphenyl and others, subsitituted in positions
>  ortho and/or meta. The energy dependence of the torsional
>  angle between the phenyl rings is of particular interest.
>  Any suggestions?
>  
>   Sincerely,
>   
>   Andrzej Szymoszek
>   
>   aszym@wchuwr.chem.uni.wroc.pl
>   Chemistry Department
>   University of Wroclaw, Poland 
> -= This is automatically added to each message by mailing script =-
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> 
> 
> 
> 
> 
From chemistry-request@server.ccl.net  Tue May  4 11:33:48 1999
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Subject: Re: CCL:mopac6/NT
To: goeller@pc04.chemie.uni-jena.de (Andreas Goeller)
Date: Tue, 4 May 99 9:28:32 MDT
From: "Serguei Patchkovskii" <patchkov@ucalgary.ca>
Cc: chemistry@www.ccl.net
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Hi,

> does anybody have a free MOPAC6 version, which

Unless for some reason you insist on Mopac6, you are welcome
to try extended DOS executable (it should run Ok in a DOS box
of WNT) of Mopac7 either at:

ftp://ftp.ccl.net/pub/chemistry/software/MS-DOS/mopac_for_dos/mopac7/

or at:

http://www.cobalt.chem.ucalgary.ca/ps/hobby/mopac7/

Due to the way it was ported to DOS/Windows, this version
will be limited to only a handful of atoms under WNT, but
it should be enough for an undergrad course. If you wish,
you can even have a (DOS, but will run in a DOS box, too)
GUI to go with it, see:

http://www.cobalt.chem.ucalgary.ca/ps/moldemo/

Regards,

/Serge.P

-- 
home page: http://www.cobalt.chem.ucalgary.ca/ps/
From chemistry-request@server.ccl.net  Tue May  4 12:33:25 1999
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Date: Tue, 04 May 1999 17:27:39 +0100
From: Mark Forster <mforster@nibsc.ac.uk>
Organization: NIBSC
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Dear CCL

Could anyone comment on the relative merits of these Poisson-Boltzmann
electrostatic calculation codes ?

    Delphi,
    UHBD,
    MEAD
and any others that may exist,

for the tasks of
    (a) calculation of amino acid pKa in proteins
    (b) calculating electrostatic component of binding energies
    (c) calculation electrostatic component of solvation free energies.

I'll summarise the replies that I receive.

Thanks

Mark

--

  Dr Mark J Forster Ph.D.
  Principal Scientist
  Informatics Laboratory
  National Institute for Biological Standards and Control
  Blanche Lane, South Mimms,
  Hertfordshire EN6 3QG, United Kingdom.

  Tel  +44 (0)1707 654753
  FAX  +44 (0)1707 646730
  E-mail  mforster@nibsc.ac.uk


From chemistry-request@server.ccl.net  Tue May  4 14:45:26 1999
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From: Jordi Villa <jvilla@imim.es>
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Subject: Re: CCL:Poisson Boltzmann codes.
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If you are not specifically interested in Poisson-Boltzmann calculation for the
three tasks you list below I would suggest to use program POLARIS, from Arieh
Warshel, that is especially devoted to perform them following a different approach
than PB. This program uses the Langevin dipoles methodology and it can be found in

http://futura.usc.edu/programs

You can find also Warshel's references in that page and how to get the program.

Jordi

Mark Forster wrote:

> Dear CCL
>
> Could anyone comment on the relative merits of these Poisson-Boltzmann
> electrostatic calculation codes ?
>
>     Delphi,
>     UHBD,
>     MEAD
> and any others that may exist,
>
> for the tasks of
>     (a) calculation of amino acid pKa in proteins
>     (b) calculating electrostatic component of binding energies
>     (c) calculation electrostatic component of solvation free energies.
>
> I'll summarise the replies that I receive.
>
> Thanks
>
> Mark
>
> --
>
>   Dr Mark J Forster Ph.D.
>   Principal Scientist
>   Informatics Laboratory
>   National Institute for Biological Standards and Control
>   Blanche Lane, South Mimms,
>   Hertfordshire EN6 3QG, United Kingdom.
>
>   Tel  +44 (0)1707 654753
>   FAX  +44 (0)1707 646730
>   E-mail  mforster@nibsc.ac.uk
>
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--
Jordi Vill`a
Research Group on Medical Informatics
Carrer del Doctor Aiguader 80
E-08003 Barcelona
Tlf: 34-93-2211009           Fax: 34-93-2213237
jvilla@imim.es         http://www1.imim.es/~jvilla



From chemistry-request@server.ccl.net  Tue May  4 15:37:57 1999
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Date: Tue, 4 May 1999 15:22:02 -0400 (EDT)
From: Steve Heller <chem@feldmann.nist.gov>
To: ACSMEDI@LISTS.WAYNE.EDU, amber@cgl.ucsf.edu, APPLSPEC@uga.cc.uga.edu,
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Subject: ChemInt'99 Announcement 
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This note is a reminder that the deadline for web Abstract Submissions
for possible oral presentations for the Chemistry and the Internet
(ChemInt'99) meeting is June 1, 1999.  After June 1 all abstarcts
submitted and accepted will be for the poster session only.

All accepted abstracts are currently available on the meeting web site -
www.chemint.org

The ChemInt'99 meeting is being held in at Georgetown University in
Washington DC on September 25-27, 1999.  

The program of invited speakers and panel members of the 3 panel sessions 
is available on the meeting web site - www.chemint.org

You are urged to look at the program and to consider submitting a
poster paper to the meeting.  A number of poster papers submitted by June
1 will be selected for oral presentation at the meeting.

The main lecturers for the meeting will be:

Alan Arnold, University College (UNSW)
Steven Bachrach, Northern Illinois University
Robert Bovenschulte, ACS
Stephen Boyer, IBM
Karl Harrison, Oxford University
Clemens Jochum, Deutsche Bank
Gary Mallard, NIST
Tom Pierce, Rohm & Haas
Jerome Reichman, Vanderbilt
Achim Zielesny, Bayer AG
Steven S. Zumdahl, University of Illinois at Urbana-Champaign



The (current) corporate sponsors for the meeting are:
ChemWeb and the Internet Journal of Chemistry


Technical Sponsors are:

ACS CINF Division
ACS COMP Division
The Chemical Structure Association (CSA)
Georgetown University - Department of Chemistry
International Union of Pure and Applied Chemistry (IUPAC) 
Japan Association for International Chemical Information (JAICI)
Special Libraries Association (SLA) Chemistry Division
Royal Society of Chemistry (RSC)



Steve Heller



Steve Heller, Guest Researcher
NIST/SRD, Mail Stop: 820/113
820 Diamond Avenue, Room 101
Gaithersburg, MD 20899-2310 USA
E-mail:  chem@feldmann.nist.gov










From chemistry-request@server.ccl.net  Tue May  4 19:24:35 1999
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Date: Wed, 05 May 1999 09:19:41 -1000
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Subject: Molecular Modelling 99
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First Announcement & Call for papers
http://www.uq.edu.au/~ddmdoole/mm99
The 5th Annual Molecular Modelling 99 Conference
September 21-24 1999 Bardon Conference Centre, Brisbane, Australia. 

The Centre for Drug Design and Development and The University of
Queensland are pleased to host MM99.

We are seeking abstracts for papers and posters in any area of molecular
modelling, with some current themes listed below.


* Bioinformatics
* Chemoinformatics and molecular similarity
* de novo drug design 
* Scoring functions and QSAR
* Protein-protein interactions
* Material sciences


For more information, please visit our web-site 
http://www.uq.edu.au/~ddmdoole/mm9 or contact me at 
m.dooley@mailbox.uq.edu.au with your mailing address and I will 
forward to you the conference brochure.
-- 
#################################################################
Dr Michael Dooley 
Centre for Drug Design and Development
The University of Queensland St Lucia, Qld, 4072 Australia
Brisbane Molecular Modeling Group http://www.uq.edu.au/~ddmdoole/
