Subject: Sybyl output to NAMD

From: Andrew Hall <[email-masked]>
Date: Thu, 14 Oct 1999 10:22:06 -0500

We are working on protein-ligand dynamics using NAMD and would like to
be able to take the MOL2 output of Sybyl for the small molecules and
easily use it in the NAMD sims. I was hoping someone had followed a
similar path and there are available Perl or other scripts which will
convert from MOL2 format into (e.g.) a topology file for Xplor or other
pathways which will make input into NAMD possible.

Thanks,

A.

--
Andrew Hall
[email-masked]
Center for Bioenvironmental Research
Tulane University/Xavier University