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From: Ernest Chamot <echamot@chamotlabs.com>
Subject: CCL:The "birth-year" of computational chemistry?
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This discussion has been interesting because, as Dominic Ryan pointed out:

>. . . .  It depends of course on just
>what you call computational chemistry.

Use of the term to mean: the ability to describe a chemical or chemical process mathematically (Theoretical Chemistry?  Pople's & Ryan's point of view?), vs. actually carrying out the necessary computation (Calculational Chemistry?)  The use of computers by chemists (analyzing data, etc.; Computers in Chemistry?) vs. modeling a chemical or chemical process with the computer (Molecular Modeling?).  Use of "Computer" in the original, more general sense (a machine that returns a numerical result; Marchesa's point of view?), vs. a more modern meaning (understood to refer to electronic, digital computers?)  Etc.

IMHO, what makes Computational Chemistry distinct, is that our chemical theories have been implemented in software, and computer hardware has developed that can run that software, to the point that it is practical to routinely APPLY theory to accurately model molecular structure and chemical processes, and to calculate numerical results which were previously only available experimentally.  So from that point of view, the "Birth" of Computational Chemistry must be when these theories _started_ being converted into software and run on the type of computer hardware that _ultimately_ became fast enough to _routinely_ model chemistry.  So I think Lingran's second question comes close to defining the birth:  

>2. Who wrote the first quantum chemistry program?

The only thing I would add, is that since only electronic, digital computers have been developed to be programmable and fast enough to routinely do these calculations, I would say the birth year is the year that someone first coded and ran a quantum chemistry (or other molecular modeling) program on an electronic, digital computer.  The worlds first electronic, digital computer, ENIAC (Electronic Numeric Integrating Automatic Computer), was constructed at the University of Pennsylvania in 1945, this sets an early limit for the birth of Computational Chemistry.

With this point of view in mind, I have some inside information (albeit second-hand) about the early days, that is relevant.  I have a close relationship with one of the programming pioneers at Argonne National Laboratories.  Cynthia Chamot (yes, this is my Mother, and I'm quite proud of her) was one of the early programmers hired by Argonne to program the third, all electronic, digital computer ever built, AVIDAC. AVIDAC (Argonne's Version of the Institute's Digital Automatic Computer) was constructed around 1950, only 5 years after ENIAC.  (Argonne's second computer, by the way, was named "George.")

She recalls working as part of a team with  several others (including Ruth Freshour & Gerry Duffy) in the Applied Math Division, to develop code for John Weil in the Chemistry Division, by 1956.  She specifically remembers the need for part of the code to find eigenvalues and invert 13x13 matrices with only 512 "words" (not K) of memory to work in!  She isn't sure whether this was a QM calculation, but it looks like Computational Chemistry had started at Argonne sometime between 1950 and 1956.

Prior to that, the military used computers on the Atomic Bomb project, as  Richard Gillian mentioned:

>I seem to recall, that Monte Carlo methods invented during the 
>Atom Bomb project in the 40's may have been the first electronic 
>computer calculations on condensed matter, although they may not qualify as
>chemistry. I remember a facinating talk by W. Wood (Los Alamos) at a computer

I know one of the earliest uses was to analyze the probability of one nuclear reaction triggering multiple nuclear reactions, to determine exactly what constituted a critical mass.  Is this the 'Monte Carlo" calculation referred to in Gillian's reference?  If so, I would consider this a Computational Physics or statistical computation rather than Computational Chemistry.  If it really is a Chemistry code, then the birth of Computational Chemistry may be before 1950: as early as 1945.

EC
---

Ernest Chamot
Chamot Laboratories, Inc.
530 E. Hillside Rd.
Naperville, Illinois 60540
(630)637-1559
echamot@chamotlabs.com
http://www.chamotlabs.com/cl



From chemistry-request@server.ccl.net  Mon Feb 28 06:06:07 2000
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From: Harald Svedung <svedung@phc.chalmers.se>
To: Ernest Chamot <echamot@chamotlabs.com>
cc: Computational Chemistry List <CHEMISTRY@ccl.net>
Subject: Re: CCL:The "birth-year" of computational chemistry?
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Hi all!

Ernest Chamot writes about some trial definitions on some cc-related 
terms.

Maby it's a little unfortunate that the term Molecular Modeling has 
become limited to the use of computers as the term says nothing about 
using any means of numerical descriptions what so ever. Yes, numerical 
meassures are practical to use, and digital, even electronic, computers 
are what we often think of in terms of tools, but the spring-and-ball 
contraption is, allthough a rugh and classical one, a modell of a 
molecular system and to handel it is therefore to do Molecular 
Modeling.

There is of course Computational Molecular Modeling with the 
'Computational' being implicit.

;-)
/Harald

Harald Svedung (Ph.Lic.)                phone:          +46-31-7722816
Department of Chemistry                 fax:            +46-31-167194
Physical Chemistry                      home phone:     +46-31-240897, +46-709223206	
Goeteborg University                    home e-mail:    harald.svedung@svedung.pp.se
SE-412 96 Goeteborg, Sweden             www.che.chalmers.se/~svedung/	



From chemistry-request@server.ccl.net  Mon Feb 28 08:12:35 2000
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+======================---------------- --- -- -  -   -     -        .
| Dear chemistry,
:
.

I  received XRay data without H atoms coordinates. Is there a programm
to  add  H  to  XRay  data?  Binaries for DOS/Win or C/C++ sources are
perfect.

Best regards,
 Mike                          mailto:mike@mnc.md
                                                                     .
                                                                     :
                                                                     |
.        -     -   -  - -- --- ----------------======================+



From chemistry-request@server.ccl.net  Mon Feb 28 08:19:37 2000
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Dear Netters:
i would like to know what is the true definition of bond, this question can also be given in the following:
given a file only including coordinates of atoms in molecule, there are not connectivities between atoms in molecule, just from 
this file how can i find the bonds or connectivities? using Van der walls radius or covalance radius of atoms or some results of 
population analysis from theoretical calcualtion?

thank you

  
Li Guo Hui
State Key Laboratory of Molecular Reaction Dynamics
Dalian Institute of Chemical Physics
Liao Ning Province, P.R.China

Mailing Address:
Room 715
Xing Hai Third Street, 59 #
Sha He Kou District
Dalian, Liaoning Province
P.R.China, 116023


From chemistry-request@server.ccl.net  Mon Feb 28 03:38:28 2000
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Ernest Chamot wrote:

>
>  The worlds first electronic, digital computer, ENIAC (Electronic Numeric Integrating Automatic Computer), was constructed at the University of Pennsylvania in 1945, this sets an early limit for the birth of Computational Chemistry.
>

Dear Ernest Chamot

maybe the ENIAC was the first computer in the world.

The first computer in europe, Z3 (Zuse 3) was finished by Konrad Zuse in 1941 (Berlin, Germany).

J. G.

--
Jörg Grunenberg, Org. Chemie, Hagenring 30, 38106 Braunschweig
email: Joerg.Grunenberg@tu-bs.de phone: +49 531 391 5252
URL: http://www.tu-bs.de/institute/org-chem/grunenberg/grunenberg.html




From chemistry-request@server.ccl.net  Mon Feb 28 03:39:27 2000
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Hello!

Can anybody give me the values of radii of Cu, Fe and Mg atoms
for the Connoly's MS program?

Thanks,
Dmitry




From chemistry-request@server.ccl.net  Mon Feb 28 05:51:37 2000
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Date: Mon, 28 Feb 2000 11:51:14 +0100
From: =?iso-8859-1?Q?Eldbj=F8rg_Sofie_Heimstad?= <esh@nilu.no>
Subject: Interpretation of certain local MO-descriptors
To: CCL <chemistry@ccl.net>
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Local atomic MO-descriptors,

I am especially interesting in the evaluation and interpretation of the
local descriptors FN (nucleophilic frontier electron density), FE
(electrophilic frontier electron density), SN (nucleophilic
superdelocalisability), SE (electrophilic superdelocalisability).
I have a version of MOPAC where I can extract these properties, but I have
some problems understanding the interpretation of the extracted values. I
wonder if one should evaluate the ABSOLUTE values or not (maybe this will
depend on how the equations are implemented in the different programs?).

Many thanks in advance,
#########################################
Eldbjørg S. Heimstad
NILU Norwegian Institute for Air Research
The Polar Environmental Centre
N-9296 Tromsø, Norway

Tel. +47-77 75 03 75
Fax. +47-77 75 03 76
E-mail: Eldbjorg.Sofie.Heimstad@nilu.no
Web: http://www.nilu.no
#########################################





From chemistry-request@server.ccl.net  Mon Feb 28 09:20:23 2000
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Date: Mon, 28 Feb 2000 14:15:42 +0000
To: CHEMISTRY@ccl.net
From: "Rzepa, Henry" <h.rzepa@ic.ac.uk>
Subject: Re: CCL:The "birth-year" of computational chemistry?
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>.. The worlds first electronic, digital computer, ENIAC (Electronic Numeric Integrating Automatic Computer), was constructed at the University of Pennsylvania in 1945, this sets an early limit for the birth of Computational Chemistry.

A rather US centric claim.  There was certainly a computer built by Turing well before  1945
at Bletchley park, to decode the  German  Enigma ciphers which probably qualifies. Turing
was also associated with Manchester  University, that I believe also has a prior claim  to
ENIAC.  No doubt reference to the textbooks (mine are at home and  I write this from work)
will clarify this issue.

Apologies for being slightly off topic!
-- 

Henry Rzepa. +44 (0)20 7594 5774 (Office) +44 (0)20 7594 5804 (Fax)
Dept. Chemistry, Imperial College, London, SW7  2AY, UK. 
http://www.ch.ic.ac.uk/rzepa/

From chemistry-request@server.ccl.net  Mon Feb 28 10:04:32 2000
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From: "pythagoras" <garoufal@physics.upatras.gr>
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Subject: polarizability and dielectric constant
Date: Mon, 28 Feb 2000 17:04:40 +0200
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Dear CCLers

My question  is:
How can one compute the dielectric constant
of a cluster? I am interested semiconductor clusters.
I can imagine that polarizability should be calculated first
and then by implementing some formula one gets the dielectric constant. I am
not so sure about what is the correct formula. would
the clausious - Mossoti realation be good enough?

Thanks in advance



From chemistry-request@server.ccl.net  Mon Feb 28 11:11:13 2000
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In-reply-to: Message from "Rzepa, Henry" <h.rzepa@ic.ac.uk> 
 of "Mon, 28 Feb 2000 14:15:42 GMT." <p04310100b4e032a1cf14@[155.198.224.86]> 
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Date: Mon, 28 Feb 2000 11:10:56 -0500
From: "David E. Bernholdt" <bernhold@npac.syr.edu>

I don't want to enter this fray except to say that one must be careful
to distinguish betweeen (a) analog and digital computers, and (b)
purpose-specific and general programmable computers.  Many early
computers were hardwired for specific tasks. I think you're free to
argue as much about the definition of the earliest computer as you are
about what constituted computational chemistry :-)

Incidentally, I know that Iowa State U claims that that the
Atanasoff-Berry Computer (built 1937-1942) was the first _digital_
computer, predating ENIAC. (http://www.scl.ameslab.gov/ABC/ABC.html)

--
David E. Bernholdt                      | Email:  bernhold@npac.syr.edu
Northeast Parallel Architectures Center | Phone:  +1 315 443 3857
111 College Place, Syracuse University  | Fax:    +1 315 443 1973
Syracuse, NY 13244-4100                 | URL:    http://www.npac.syr.edu

From chemistry-request@server.ccl.net  Mon Feb 28 12:08:47 2000
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If you are interested in the History of Computer, 
you may check the following web site.

http://ox.compsoc.net/~swhite/timeline.html

However, please be warned that some dates
may not be absolutely correct!
-Lingran


David E. Bernholdt wrote:
> 
> I don't want to enter this fray except to say that one must be careful
> to distinguish betweeen (a) analog and digital computers, and (b)
> purpose-specific and general programmable computers.  Many early
> computers were hardwired for specific tasks. I think you're free to
> argue as much about the definition of the earliest computer as you are
> about what constituted computational chemistry :-)
> 
> Incidentally, I know that Iowa State U claims that that the
> Atanasoff-Berry Computer (built 1937-1942) was the first _digital_
> computer, predating ENIAC. (http://www.scl.ameslab.gov/ABC/ABC.html)
> 
> --
> David E. Bernholdt                      | Email:  bernhold@npac.syr.edu
> Northeast Parallel Architectures Center | Phone:  +1 315 443 3857
> 111 College Place, Syracuse University  | Fax:    +1 315 443 1973
> Syracuse, NY 13244-4100                 | URL:    http://www.npac.syr.edu
> 
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From chemistry-request@server.ccl.net  Mon Feb 28 09:55:24 2000
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Date: Mon, 28 Feb 2000 15:55:07 +0100
From: pascal boulet <Pascal.Boulet@chiphy.unige.ch>
Subject: Summary on oscillator strengths in TD-DFT.
To: ccl <chemistry@server.ccl.net>
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Dear CCL'ers,

Few weeks ago I send a question concerning the reliability of oscillator
strengths in TD-DFT. Here is the answer I get (thank you Prof. Stefan
Grimme):

>>>>>>>

Dear Pascal,
to my knowledge there is no systematic investigation
on f-values with TDDFT. This makes sense because
the systems for which TDDFT is usually used are quite large
so that accurate exp. or theor. f-values are difficult
to obtain. From my experience it turned out that the TDDFT f-values
are quite reliable if the state is reasonably described by the
method. They are usually better than those from CIS
(because the RPA type equations solved satisfy certain sum rules)
and may also be better than those from RPA (because the KS-orbitals
are better). Care should be taken if states with diffuse(Rydberg)
character are considered. A (however not too meaningfull) hint
on the accuracy can be obtained by comparison of f(L) and f(V)
(should be identical in a complete basis).

Stefan

___________________________________________
       Prof. Dr. Stefan Grimme
    Organisch-Chemisches Institut
     (Abt. Theoretische Chemie)
  Westfaelische Wilhelms-Universitaet
         Corrensstrasse 40
         D-48149 Muenster
     Tel (+49)-251-83 36512/33241
     Fax (+49)-251-83 36515
     Email:grimmes@uni-muenster.de
___________________________________________

<<<<<<<

******************************************************************
Pascal BOULET               Pascal.Boulet@chiphy.unige.ch
Département de Chimie-Physique
Université de Genève
30, Quai Ernest-Ansermet
CH-1211 Genève 4
tel: (+41) 22 702 65 77 or (+41)  22  702 65 32
fax: (+41) 22 702 65 18
and
Université Claude Bernard Lyon 1
 43, Bd du 11 Novembre 1918
69622 Villeurbanne Cedex               France
****************************************************************



From chemistry-request@server.ccl.net  Mon Feb 28 12:07:42 2000
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From: Tom Hawkins <THawkins@osmetech.plc.uk>
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Subject: RE: The "birth-year" of computational chemistry? 
Date: Mon, 28 Feb 2000 17:05:35 -0000
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David E. Bernholdt [bernhold@npac.syr.edu] said:

>I don't want to enter this fray except to say that one must be careful
>to distinguish betweeen (a) analog and digital computers, and (b)
>purpose-specific and general programmable computers.  Many early
>computers were hardwired for specific tasks. 

Manchester celebrated the 50th anniversary of the first digital stored
program computer (the 'Baby') in 1998:

http://www.computer50.org/

Among the celebrations was a competition to write a program for the first
machine - see details on http://www.cs.man.ac.uk/prog98/ where John Sargeant
(ex- competition coordinator) says:

"In my view, "stored-program computer" (i.e. "computer-with-software") is a
tautology, given the modern usage of the word "computer". It's difficult to
imagine running a competition like this for any of the "computers" which
existed before the Baby. And we've seen that the store was (just) big enough
to make interesting programs possible. So if anybody else claims to have The
World's First Computer, ask them for details of their programming
competition. "



Dr Tom Hawkins             Osmetech plc
Sensor Technologist        Electra House, Electra Way, Crewe CW1 6WZ
thawkins@osmetech.plc.uk   Tel +44(0)1270 216444 Fax +44(0)1270 216030 


From chemistry-request@server.ccl.net  Mon Feb 28 12:12:15 2000
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Summary of responses to 02/16/2000:

	Does anyone know about a gaussian basis set for tin that is larger
than 3-21G*?    A 6-31G* basis set would be ideal.   Feel free to e-mail
me directly,  replies will be summarized and posted here.                 
                			Wil.



	1)   a basis set library which includes tin at:
             www.tcm.phy.cam.ac.uk/~mdt26/crystal.html              
	     Mainly for solids,  so reoptimization of
	     valence functions may be necessary.
		(Michael Towler- University of Cambridge)

	2)   EMSL Laboratory Pacific National Laboratory 
	     http://www.emsl.pnl.gov:2080/forms/basisform.html
			or
	     http://wserv1.dl.ac.uk:800/emsl_pnl/basisform.html
	     This was suggested by several people.
	     STO-3G
	     3-21G
	     WTBS
	     LANL2DZ ECP
	     SBKJC VDZ ECP
	     CRENBL ECP
	     Stuttgart RLC ECP
	     DZVP (DFT Orbital)
	     DeMon Coulomb Fitting
 	     DGauss A1 DFT Coulomb Fitting
	     DGauss A1 DFT Exchange Fitting
	     Ahlrichs Coulomb Fitting
	     Huzinaga Polarization      

	3)   If you are happy to perform ECP calculations then the
             following basis sets may be of interest:

		LANL2DZ        H-La,Hf-Au,U-Pu
		SBKJC VDZ      H-Ce,Hf-Rn
                CRENBL         H,Li-Np
 		Stuttgart RLC  Li-Ne,
			       Na-Ar,
			       K-Ca,Zn-Kr,                                 
		               Rb-Zr,In-Xe
			       Cs-Ba,Hg-Rn
			       Ac-Md     
		(Huub Van Dam--CCLRC Daresbury Laboratory)

	 4)	There's a 43333/4333/43 basis set, which could be
		uncontracted to 4333111/433111/43 (shouldn't have to
		uncontract a filled d-shell on a tin) in Huzinaga's
		"Physical Sciences Data 16:Gaussian Basis Sets for Moleculer
		Calculations".  That would get you something between a 4-31G
		and a 6-311G. I've used these, with the mentioned
		decontraction, plus polarization d and
		diffuse functions when I need an all electron basis set for
	        4th row elements.                                  
                (Frederick P. Arnold, Jr.--University of Chicago)

Any further suggestions will be welcomed. 
(Wil Cope--University of California, Davis)












From chemistry-request@server.ccl.net  Mon Feb 28 12:13:06 2000
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Subject: XLF 6.1 with -O4 (additional comment)
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From: cml@uni-muenster.de (Christian Mück-Lichtenfeld)

Dear colleagues,

this comment follows my question on compling Gaussian98
Rev. A7 with the XLF 6.1 Compiler using optimization
level -O4, which resulted in runtime errors.

We have got the same problem with Turbomole, which strongly
implies that the errors of the compiled programs have in
some way to be connected with the compiler we use on the specific
hardware platform (IBM RS6000 43P 260 / AIX 4.3.3).  

So I extend my original question and ask anyone who
has tried to compile a program with XLF using -O4
to give me some information about his/her experiences.

Best wishes to all of you

Christian Mueck-Lichtenfeld




----------------------------------------------
Dr. Christian Mueck-Lichtenfeld
Westfaelische Wilhelms-Universitaet
Organisch-Chemisches Institut
Corrensstrasse 40
D-48149 Muenster, Germany

cml@uni-muenster.de  |  +49 251 83 33239
----------------------------------------------



From chemistry-request@server.ccl.net  Mon Feb 28 13:01:46 2000
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From: TJ ODonnell <tj@eecs.uic.edu>
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Subject: The "birth year" of computational chemistry
To: chemistry@ccl.net
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Perhaps we should distinguish between analog, digital and human
computers, as well.  Some of the first applications of
quantum theory to chemisty (to molecules as opposed to atoms)
were carried out by Mulliken.  I'm not sure if I have it right,
but the story goes that Mulliken's father (a mathematician?)
actually performed the computations using pencil and paper.

And it's certainly true that people have been thinking of
computational chemistry for a long time.  Here are two favorite
quotes of mine from the 19th century.

"We are perhaps not far removed from the time when we shall be able
to submit the bulk of chemical phenomena to calculation." 
- Joseph Louis Gay-Lussac, Memoires de la Societe d'Arcueil 2:207 (1808)

"All of chemistry, and with it crystallography, would become a branch
of mathematical analysis which, like astronomy,
taking its constants from observation, would enable us to predict
the character of any new compound and possibly
the source from which its formation might be anticipated." 
- Charles Babbage, 1838, quoted in Faster than Thought,
B. V. Bowden, ed., Sir Isaac Pitman & Sons, Ltd., London, 1953, p. 12.

Two more quotes are at:
http://www.eecs.uic.edu/~tj/quotes.html#computational_chemistry


TJ O'Donnell
tjo@acm.org


From chemistry-request@server.ccl.net  Mon Feb 28 12:34:46 2000
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Date: Mon, 28 Feb 2000 12:38:09 -0500
From: elewars <elewars@trentu.ca>
Subject: Re:REPLY TO HOW TO FIND BONDS
To: chemistry@ccl.net
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Hello,

So far as I know there is no "true definition" of a bond. At one level the concept is simple, at another level sophisticated. Given
the cartesian coordinates of a molecule, the simplest way to get the "bonds" is to draw a line between all pairs of nuclei within a
distance that experience or general agreement says is bonding; there are programs that will do this (e.g. Molwin, some versions of
Spartan). This shows you what the molecule looks like, which is sometimes all you want.
Of course bonds can be assigned from calculated bond order, determined by the coefficients of the basis functions in the occupied
MOs (e.g. Lo:wdin B.O., Meyer B.O., Mulliken B. O), or from an analysis of the calculated electron density: AIM analysis--atoms in
molecules (Bader analysis).

EL
=====

li guo hui wrote:

> Dear Netters:
> i would like to know what is the true definition of bond, this question can also be given in the following:
> given a file only including coordinates of atoms in molecule, there are not connectivities between atoms in molecule, just from
> this file how can i find the bonds or connectivities? using Van der walls radius or covalance radius of atoms or some results of
> population analysis from theoretical calcualtion?
>
> thank you
>
>
> Li Guo Hui
> State Key Laboratory of Molecular Reaction Dynamics
> Dalian Institute of Chemical Physics
> Liao Ning Province, P.R.China
>
> Mailing Address:
> Room 715
> Xing Hai Third Street, 59 #
> Sha He Kou District
> Dalian, Liaoning Province
> P.R.China, 116023
>
> -= This is automatically added to each message by mailing script =-
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From chemistry-request@server.ccl.net  Mon Feb 28 15:03:02 2000
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Date: Mon, 28 Feb 2000 15:02:48 -0500
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From: Sompop Sanongraj <ssanongr@mtu.edu>
Subject: Need some helps for adsorption energy
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Hi all
I try to apply the computational calculation for adsorption field. First, I
try to calculate adsorption interaction (at zero coverage) between noble
gases (He, Ne, Ar and Kr) and the graphite lattice (7 rings) as shown in
Figure below.
                    ____
                   /    \
              ____/      \____
             /    \      /    \
            /      \____/      \
            \      /    \      /
             \____/   o  \____/
             /    \      /    \
            /      \____/      \
            \      /    \      /
             \____/      \____/
                  \      /
                   \____/

Where (o) in the center denotes the atom of noble gas above the ring
cluster representing the graphite.

To do this, I optimized and calculated the energy of the graphite
lattice(E1), each noble gas (E2) and the merged system between graphite
lattice and each noble gas (E3). For each step, the methods and basis sets
are the same for calculating E1, E2 and E3.  Then I simply calculated the
adsorption interaction energy by E3-(E1+E2). The optimization methods basis
sets (I used gaussian 98, A.7) and the results are shown below.
                                         
                                         Adsorption Interaction Energy
(E3-(E1+E2)), cal/mole
Methods and basis sets                 He                Ne
Ar               Kr                           
RHF/6-311g(d)                      -2.07078           -19.39004
-17.06826         -13.93071
RHF/6-311g(d)//B3LYP/6-311g(d)    -308.92293          -17.50751
234.50030         793.98777
B3LYP/STO-3g                       -4.64357           -2.51004
112.95171         48.82024
B3LYP/6-311g(d,p)                  -22.40209          -570.34338
-22.08833         -44.11392

For the expected result, we should obtain the linear relationship between
the adsorption energy and the atomic no. of noble gas because the
dispersion interaction is dominant (theorrtically, the dispersion
interaction depends on polarizability). Also the sign of adsorption
interaction should be negative because it supposes to be released energy. I
got no luck. As you can see from my results, there are no methods and basis
sets that the results will follow the expected result. Can anybody give me
some suggestion about the method or basis set that I used  or anything that
I should aware of when I do this kind of calculation?
Thanks in advance 
dom 

Sompop Sanongraj
208 Church Street
Hancock MI 49930.

TEL: (906) 482 9377


From chemistry-request@server.ccl.net  Mon Feb 28 15:26:06 2000
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From: "Alexei Khalizov" <khalizov@chemistry.mcgill.ca>
Organization: Chemistry Dept., McGill University
To: hocquet@lpbc.jussieu.fr
Date: Mon, 28 Feb 2000 15:25:39 -0500
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Hi Alexandre,

The paper you are looking for is:

Reed, A. E.; Curtiss, L. A.; Weinhold, F. Chem. Rev. 1988, 88, 
899-926.

So, the year was wrong!

Regards,
Alexei


AH> Dear CCLers,

AH> As I was browsing the Weinhold NBO web page as recently 
advised
AH> (courtesy of Alexei Khalizov), i was puzzled to see in the 
reference
AH> list a publication :

AH> a.. Intermolecular Interactions From A Natural Bond Orbital,
AH> Donor-Acceptor Viewpoint. A. E. Reed, L. A. Curtiss, and F. 
Weinhold,
AH> Chem. Revs. 88, 899 (1998)

AH> which i eventually could not find at this reference.

AH> Does any CCLer have a rational explanation for this ? Does a 
publication
AH> on this topic actually exist ?

AH> Thanks in advance

AH> Alexandre HOCQUET
AH> Laboratoire de Physicochimie Biomol=E9culaire et Cellulaire
AH> ESA CNRS 7033
AH> hocquet@lpbc.jussieu.fr
AH> Fax: 33 144277560
AH> LPBC, case courrier 138
AH> 4 Place Jussieu, 75252 PARIS Cedex 05, France


AH> -= This is automatically added to each message by mailing 
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Jan: jkl@ccl.net


-------------------------
Dr. Alexei Khalizov
Departments of Chemistry
McGill University,
801 Sherbrooke St. W.,
Montreal, Quebec, CANADA,
H3A 2K6

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Ernest Chamot wrote:
> 
> This discussion has been interesting because, as Dominic Ryan pointed out:
> 
> >. . . .  It depends of course on just
> >what you call computational chemistry.
> 
> Use of the term to mean: the ability to describe a chemical or chemical process mathematically (Theoretical Chemistry?  Pople's & Ryan's point of view?), vs. actually carrying out the necessary computation (Calculational 
...

Yes, very much so, but I think there was a definite point at which
Quantum Chemistry broke off from Quantum Mechanics. Almost all of us
quantum chemists start our calculations with not just RHF or UHF but the
LCAO-MO method. This is in the domain of linear algebra whereas much of
what went before was  differential equations. Linear algebra solutions
are the stuff of computer calculations and they were just right for the
vacuum tube computers as they are now for chips. These linear
combinations were probably what Ernest Chamot's mother was programming.
The two people who, independently, are responsible for the LCAO-MO
method being put on a firm theoretical foundation are C.C.J.Roothaan
(Rev.Mod.Phys.23,69,1951), G.G.Hall (Proc. Roy. Soc. A205, 541, 1951).
When we were publishing in the 1970's we were still calling it the
'Roothaan-Hall' LCAO-MO method.
and BTW for my younger American colleagues: it is not pronounced
"Ruth-Ann".
Luke
-- 
Luke A. Burke		
Professor and Chair, Department of Chemistry
Rutgers University, Camden, NJ08102, USA
tel: 609-225-6158/6142;fax:-6506

From chemistry-request@server.ccl.net  Mon Feb 28 12:47:06 2000
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Date: 28 Feb 00 09:46:38 PST
From: oren oshpiz <ooren@netscape.net>
To: ccl <chemistry@ccl.net>
Subject: Drug Design in the internet
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oren oshpiz <ooren@netscape.net> wrote:
10 days ago I asked for information about drug design which I
can find in the Internet.

I summarized in the site http://sites.netscape.net/ooren/ddesign -
The most useful sites that I got from ccl's replies or  by searching
The topic in the Internet (search engines).
I hope this site can assist those who are interested in this field.
Thanks for all the replies. 

Oren Oshpiz.


oren oshpiz <ooren@netscape.net> wrote:
I am looking for a Drug Design (or Drug Development) courses
 which I can find in the Inter-net ,
or any other sites which I can learn this subject at them from the basics 
(as
an undergraduate) .
I already know about the VSMS site but I'll be happy to get some more ideas. 


My e-mail is ooren@netscape.net
I will be happy to forward any knowledge that I'll get to any one who desire
that.

Thank-you all  Oren Oshpiz


____________________________________________________________________
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From chemistry-request@server.ccl.net  Mon Feb 28 15:36:26 2000
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Date: Mon, 28 Feb 2000 14:36:08 -0600 (CST)
From: Zdenko Tomasic <zdenko@CS.UH.EDU>
Subject: Re: CCL:The "birth year" of computational chemistry
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I heard this attributed to Hartree's father who served as his son's
computer.


ZT



