Subject: non bonded interactions in proteins.

From: Vemparala Satyavani <[email-masked]>
Date: Mon, 17 Sep 2001 17:49:14 -0500 (CDT)

Hi,

i have a question regarding the criterion for selecting the atoms in
protein which will be involved in non bonded interactions.

While simulating polymers, the criterion is usually, atoms belonging to
seperate chains, or on the same chain, seperated by some atoms(usually>3).
is there a similar criterion in proteins?

thanks
vani