Subject: Re: CCL:how i can get detailed secondary structure from coordinate file?

From: "Ming Lei" <[email-masked]>
Date: Wed, 3 Apr 2002 11:37:55 -0500

Wish DSSP is helpful. The stride is also recommanded!

You can search them by means of google.  I forget the website.

Best,
Ming

----- Original Message -----
From: "Zhangxd" <[email-masked]>
To: "Jeff Nauss" <[email-masked]>
Cc: <[email-masked]>
Sent: Monday, February 04, 2002 5:56 PM
Subject: CCL:how i can get detailed secondary structure from coordinate
file?

> Dear All,
> during my research, i need the detailed information about secondary
> structure of my biology system, i had its coordinate file, how i can get
> its secondary structure information from this coordinate file? just like
> the following:
> Resi. 1 to Resi. 10 AlphaHelix
> Resi. 15 to Resi. 25 BetaSheet
> >..................
> >...............
>
> hopefully it should be a program can do this automatically.
> i had tried VMD, it just gives the graph of secondary structure of
> the sequence but not a detailed text information like the above sample.
>
> thanks in advance!!!!
>
>
>
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