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From: Arvydas Tamulis <tamulis@itpa.lt>
To: Geoff Hutchison <hutchisn@chem.northwestern.edu>
cc: <Chemistry@ccl.net>
Subject: Re: CCL:Atomic charges and potentials in ABINIT v3.3.2 (fwd)
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Geoff Hutchison,

You are right. Please see response from Prof. Xavier Gonze:

Also, ABINIT being oriented towards periodic solids,
it has no Hartree-Fock capabilities (Hartree-Fock is quite useless
for metals), and since some exact exchange is required for B3xxx,
we do not offer these.

Regards, Arvydas Tamulis
*****************

On Wed, 24 Apr 2002, Geoff Hutchison wrote:

> > 2) Do it is possible to use well known potentials B3LYP, B3PW91 in
> > ABINIT
> > version 3.3.2 ?
>
> I don't believe so, though I'd be interested if you've heard that this
> is possible. I don't know of any plane-wave DFT code that does the HF
> portion of the B3 exchange functional.
>
> Regards,
> -Geoff
>
> -------
> -Geoff Hutchison	<hutchisn@chem.nwu.edu>
> Ratner/Marks Groups	(847) 491-3295
> Northwestern Chemistry	http://www.chem.nwu.edu/
>
>


From chemistry-request@server.ccl.net Wed Apr 24 16:22:05 2002
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Subject: New Intel Compilers
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As an FYI to CCL, Intel today released Version 6.0 of their compilers.=20
As I'm sure most of us use Linux, there are a few new additions to the
Linux compilers.  The main improvement is partial compatibility of the
C++ compiler with the GNU gcc compiler.  Many of the GNU C language
extensions are now supported.

For more info, goto:

http://www.intel.com/software/products/compilers/

Matt Thompson
--=20
"And isn't sanity really just a one-trick pony, anyway?  I mean,
all you get is one trick, rational thinking, but when you're good
and crazy, ooh ooh ooh, the sky's the limit!" -- The Tick
  TheMatt -- http://ucsub.colorado.edu/~thompsma/Home.html

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From chemistry-request@server.ccl.net Wed Apr 24 22:18:35 2002
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From: "song yunlong" <songyunlong@hotmail.com>
To: chemistry@ccl.net
Cc: fyd@u-picardie.fr, rowyna@vplaces.net
Subject: CCL Summary: Solutions on  how to execute InsightII from a PC desktop
Date: Thu, 25 Apr 2002 10:18:20 +0800
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Hi,dear CCLers,
  I have received many helpful suggestions. I have tried several means.They 
are praticable. 
  Here is my original questions:
---------------------------------------------------------------------------------

Dear sir,
  I want to execute the InsightII software installed in SGI O2 working 
station from a PC machine.I use Exceed software to login to the SGI O2 
machine. This is smoothly. However, when I tried to run the InsightII 
software, something happened. The system response as follows: 

  Xlib: extension ¡°GLX¡± missing on display ¡°xxx.x.xxx.xx:0.0." (which is 
the IP address of my PC ) 
  Couldn¡¯t get initial visual in app-init-display

  It seems that I must install some files about OpenGL with Xlib in order 
to display the interface of InsightII. I have tried this by logging to 
another SGI Indigo 2 machine, there is nothing wrong.Where could I download 
and install the necessary files so that I can do that?
 
 
  Can you kindly provide me some solutions about how to execute the 
InsightII software from a PC desktop.Besides, The InsightII software is 
multiple user supported.
 
Thanks in advance!
 
Song Yunlong, Ph.D
songyunlong@hotmail.com
-------------------------------------------------------------------------------



1. From the PC desktop, by Exceed software, log into the remote SCI O2 
machine(host), then open a new x-window. Executing InsightII by the 
following commands:
          InsightII -axxess 
In fact,it use x-graphics, not the openGL graphic. So it didn't meet some 
special requirements,such as surface rendering as solid. The graphics are 
not nice, but you can still perform most of the insightII functions.

2. Use Exceed and Exceed3D(the latter surports openGL). As been pointed, 
Exceed is
the only one officially acknowledged by Accelrys as working in OpenGL mode.

3. Use Reflectin X. I have not tried this way. According to Dr. David 
Maxwell,
Reflection X works fine and at a significantly cheaper price.
www.wrq.com/products/reflection From this site, you can obtain a free 60 
days evaluation copy of the Reflection X.

4. Dr. Roberto actually use X-win32 from StarNet (www.starnet.com) to login 
into an SGI Octane (to use Cerius2 suite) from my win2000 pc.He has some 
problems during on-screen selections but it works quite well.

Thanks very much to all those who have reponsed me! Also, I wish it could 
be helpful for those who are interested in this problem!

Song Yunlong, Ph.D






_________________________________________________________________
Ãâ·ÑÏÂÔØ MSN Explorer£ºhttp://explorer.msn.com/lccn/intl.asp



From chemistry-request@server.ccl.net Wed Apr 24 23:03:39 2002
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	Thu, 25 Apr 2002 00:31:06 +0000
From: dkeidel397@att.net
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Subject: gaussian books
Date: Thu, 25 Apr 2002 00:31:06 +0000
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Hello all,

I am new to gaussian 98 and I was wondering if anyone
could recommend a good reference book.  I found at the
gaussian site the book:  Gaussian 98 User's Reference,
Æleen Frisch, Michael Frisch for $50.  Is this book
comprehensive - I mean does it describe both commands and
calculations (equations, etc.)?  I know there is online
help at the official site, but I would like a good
reference book as well.  Thank you in advance to all who
respond.  Have a great day.

Don Keidel
 

--
Donald J. Keidel
University of California, Riverside
Department of Biochemistry and 
Molecular Biology
Riverside, CA 92521
phone:  (909) 787-5493
fax:  (909) 787-4434
dkeidel397@att.net


From chemistry-request@server.ccl.net Thu Apr 25 10:04:26 2002
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From: antonio luiz oliveira de noronha <noronha@dedalus.lcc.ufmg.br>
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To: chemistry@ccl.net
Subject: GAMESS - Parallel 
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CCL friends

I have a non usual problem, and need some advice on it.

I running a parallel compilation of GAMESS in a SP2 machine. The
program itself works fine.
But there is  a really short wall clock limit. What I'm trying to do is,
start the calculation and let it go as far as possible. When the
calculation stops due to the wall clock, I copy the $VEC group and the
last geometry to a new ( or last ) .inp file and start again from there.

The problem is that GAMESS read the geometry and the $VEC ( is a UHF
calculation ) and optimize again the energy, but this takes
almost ALL the time I have on the run, what means that I will not
have any new geometry.
The INPUT.DOC file says that the restart options are not trustfull.

My question is, how can I restart my calculation, with the last geometry
and wavefunction I get, without having to optimize the wavefunction
again?

Please, any ideas and examples of restart files will be appreciated.

Thank you
 ______________________________________________________________________
|                                                                      |
|Antonio Luiz Oliveira de Noronha   -   noronha@dedalus.lcc.ufmg.br    |
|EEPEMM - Eletronic Spectra and Electromagnetic Properties of Molecules|
|Theoretical Physical Chemistry                                        |
|Chemistry Departament - DQ                                            |
|UFMG - Federal University of Minas Gerais - Brazil                    |
|Av. Antonio Carlos, 6627 - Campus Pampulha                            |
|CEP 31270-901 - Belo Horizonte - MG - Brazil                          |
|VOICE +55 31 499 5757   -   FAX +55 31 499 5700                       |
|______________________________________________________________________|


From chemistry-request@server.ccl.net Thu Apr 25 09:32:08 2002
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> As an FYI to CCL, Intel today released Version 6.0 of their compilers.
> As I'm sure most of us use Linux, there are a few new additions to the
> Linux compilers.  The main improvement is partial compatibility of the
> C++ compiler with the GNU gcc compiler.  Many of the GNU C language
> extensions are now supported.
> 
First question from a quantum chemist: does it support LFS (files > 2
GB) on kernels that allow it?

  Herbert


From chemistry-request@server.ccl.net Thu Apr 25 09:49:43 2002
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From: "Bimo Ario Tejo" <bimo@outgun.com>
To: chemistry@ccl.net
Date: Thu, 25 Apr 2002 21:49:24 +0800
Subject: CCL:parmscan
X-Originating-Ip: 161.142.100.85
X-Originating-Server: ws4-3.us4.outblaze.com

<P>Hi,</P>
<P>Does anyone know how to get PARMSCAN (Wang and Kollman)?</P>
<P>bimo</P>
-- 

<PRE>

Bimo Ario Tejo
PhD Student
Enzyme and Microbial Technology Laboratory
Department of Biochemistry and Microbiology
Universiti Putra Malaysia
43400 Serdang, Selangor
MALAYSIA



Get your free email from <A HREF="http://www.outgun.com" TARGET="_blank"><FONT COLOR="BLUE">http://www.outgun.com</FONT></A>

</PRE>


From chemistry-request@server.ccl.net Thu Apr 25 11:18:21 2002
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From: David van der Spoel <spoel@xray.bmc.uu.se>
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On Thu, 25 Apr 2002, Herbert Fruchtl wrote:

>First question from a quantum chemist: does it support LFS (files > 2
>GB) on kernels that allow it?
yes, I tested it. But... not over NFS 2, only on local disks.

-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel@xray.bmc.uu.se	spoel@gromacs.org   http://zorn.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++


From chemistry-request@server.ccl.net Thu Apr 25 13:32:27 2002
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From: antonio luiz oliveira de noronha <noronha@dedalus.lcc.ufmg.br>
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To: chemistry@ccl.net
Subject: GAMESS - Parallel - More information about the problem
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Hi

Let me explain the problem better.

I'm using an already pre-optimized geometry for my problem.

The first run is a UHF/DFT.
In the second one, the restart, I use GUESS=MOREAD, and add the $VEC in
the .inp file, and change the geometry for the last on generated in the
initial run. The wavefunction that I add in the $VEC is already converged.

Even adding the MOREAD card , and an previously converged wavefunction in
the $VEC, the initial step in the restart run is to reoptmize the wave
function, what is taking all the time I have to continue my optimization.

My question is, how should I set the control cards in order to restart the
calculation and the GAMESS do not reoptimize the wavefunction I am giving
in the $VEC??
Can I do this??

I hope this clarify a bit the problem.

Regards

 ______________________________________________________________________
|                                                                      |
|Antonio Luiz Oliveira de Noronha   -   noronha@dedalus.lcc.ufmg.br    |
|EEPEMM - Eletronic Spectra and Electromagnetic Properties of Molecules|
|Theoretical Physical Chemistry                                        |
|Chemistry Departament - DQ                                            |
|UFMG - Federal University of Minas Gerais - Brazil                    |
|Av. Antonio Carlos, 6627 - Campus Pampulha                            |
|CEP 31270-901 - Belo Horizonte - MG - Brazil                          |
|VOICE +55 31 499 5757   -   FAX +55 31 499 5700                       |
|______________________________________________________________________|


From chemistry-request@server.ccl.net Thu Apr 25 14:49:00 2002
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From: Ohyun Kwon <kwonohy@auburn.edu>
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Dear CCLers;
I would appreciate it if anybody can share their experience on linux
cluster with redhat7.2. I am especially interested in running G98A11 with
LINDA at redhat7.2.
Looking forward to hearing from you soon.

Best wishes, 

Tommy Kwon, Ph.D

email    : kwonohy@mail.auburn.edu
homepage : http://www.auburn.edu/~kwonohy



From chemistry-request@server.ccl.net Thu Apr 25 18:28:19 2002
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	Thu, 25 Apr 2002 22:10:18 +0000
From: dkeidel397@att.net
To: chemistry@ccl.net
Subject:  no radius for atom  17 atomic number  30
Date: Thu, 25 Apr 2002 22:10:18 +0000
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Hello all,

I am having some trouble getting gaussian 98 to read in a
van der Waals radius for Zn.  The radius I found is 1.39
angstroms.  So I use the pop=(chelpg, readrad) command
and place the line Zn 1.39 at the bottom of the variable
section.  My input is shown below:


#P HF/STO-3G SCF(Maxcycle=500) pop=(chelpg, readrad)
density=current Opt

HF/STO-3G//HF/STO-3G

0 1
  C 
  C    1 r2 
  C    2 r3    1 a3
  C    3 r4    2 a4    1 d4
  C    4 r5    3 a5    2 d5
  C    1 r6    2 a6    3 d6
  C    4 r7    3 a7    2 d7
  C    7 r8    4 a8    3 d8
  C    8 r9    7 a9    4 d9
  C    5 r10    4 a10    3 d10
  C    9 r11    8 a11    7 d11
  O    11 r12    9 a12    8 d12
  O    11 r13    9 a13    8 d13
  C    2 r14    1 a14    3 d14
  O    14 r15    2 a15    1 d15
  O    14 r16    2 a16    1 d16
  Zn    12 r17    11 a17    9 d17
  H    1 r18    2 a18    3 d18
  H    3 r19    2 a19    1 d19
  H    6 r20    1 a20    2 d20
  H    7 r21    4 a21    3 d21
  H    8 r22    7 a22    4 d22
  H    10 r23    5 a23    4 d23
Variables:
r2= 1.4192
r3= 1.3871
a3= 119.97
r4= 1.4055
a4= 120.68
d4=   0.03
r5= 1.4353
a5= 119.38
d5= 359.96
r6= 1.3713
a6= 120.80
d6= 359.97
r7= 1.4294
a7= 121.89
d7= 179.97
r8= 1.3639
a8= 121.33
d8= 179.97
r9= 1.4318
a9= 119.91
d9= 359.97
r10= 1.3982
a10= 119.60
d10= 180.03
r11= 1.4173
a11= 119.91
d11= 179.97
r12= 1.3318
a12= 125.08
d12=   0.03
r13= 1.3328
a13= 124.98
d13= 179.97
r14= 1.5382
a14= 119.45
d14= 180.03
r15= 1.2565
a15= 116.60
d15= 180.66
r16= 1.2569
a16= 116.42
d16=   0.71
r17= 2.0197
a17=  92.37
d17= 179.88
r18= 1.1058
a18= 116.95
d18= 179.97
r19= 1.1037
a19= 118.39
d19= 179.92
r20= 1.0995
a20= 121.18
d20= 179.97
r21= 1.1028
a21= 117.89
d21= 359.88
r22= 1.1009
a22= 121.65
d22= 179.97
r23= 1.1040
a23= 119.82
d23= 180.03

Zn 1.39


Does anyone know if I using the proper syntax?  I did a
little searching on the web and found a message that
mentioned that I should do it this way.  But I get the
error message:

 Atom Element Radius
    1     6    1.50
    2     6    1.50
    3     6    1.50
    4     6    1.50
    5     6    1.50
    6     6    1.50
    7     6    1.50
    8     6    1.50
    9     6    1.50
   10     6    1.50
   11     6    1.50
   12     8    1.70
   13     8    1.70
   14     6    1.50
   15     8    1.70
   16     8    1.70
   17    30    0.00
 GetVDW:  no radius for atom  17 atomic number  30.
 Error termination via Lnk1e in /usr/local/g98/l602.exe.
 Job cpu time:  0 days  3 hours 15 minutes 55.9 seconds.
 File lengths (MBytes):  RWF=   15 Int=    0 D2E=    0
Chk=    6 Scr=    1

I would greatly appreciate any help.  Thanks in advance
and have a great day.

Don Keidel

--
Donald J. Keidel
University of California, Riverside
Department of Biochemistry and 
Molecular Biology
Riverside, CA 92521
phone:  (909) 787-5493
fax:  (909) 787-4434
dkeidel397@att.net


From chemistry-request@server.ccl.net Thu Apr 25 21:16:22 2002
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Reply-To: "Narushi Goto" <fwip5390@mb.infoweb.ne.jp>
From: "Narushi Goto" <goto@bestsystems.co.jp>
To: <chemistry@ccl.net>
Subject: RE: linux cluster with redhat7.2 
Date: Fri, 26 Apr 2002 10:16:01 +0900
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Hi Tommy,

I had installed G98 Rev.A.11 with LINDA on Pentium4 cluster with RedHat 7.2.
I used PGI for compiling G98.
I recommend you that you should recompile cmain.c and fmain.f, otherwise
you can not compile Gaussian modules linked with LINDA libraries.

Regards,
	Narushi

> -----Original Message-----
> From: Computational Chemistry List
> [mailto:chemistry-request@ccl.net]On Behalf Of Ohyun Kwon
> Sent: Friday, April 26, 2002 3:49 AM
> To: chemistry@ccl.net
> Subject: CCL:linux cluster with redhat7.2
>
>
> Dear CCLers;
> I would appreciate it if anybody can share their experience on linux
> cluster with redhat7.2. I am especially interested in running G98A11 with
> LINDA at redhat7.2.
> Looking forward to hearing from you soon.
>
> Best wishes,
>
> Tommy Kwon, Ph.D
>
> email    : kwonohy@mail.auburn.edu
> homepage : http://www.auburn.edu/~kwonohy
>
>
>
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From chemistry-request@server.ccl.net Thu Apr 25 18:52:56 2002
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Date: Thu, 25 Apr 2002 18:52:37 -0400
From: uccajgo7@netscape.net (Jorge Gonzalez Outeirino)
To: chemistry@ccl.net
Subject: DeMon NMR
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Dear all,
I am running a DeMonNMR calculation to predict the 3JHC in a compound with a sulfur atom with a positive charge.Can someone suggest me an Orbital/Auxiliary basis set for that? I am trying the iii_iglo and ii3_iglo and I am having travels. 
Thanks
Jorge

-- 
Jorge Gonzalez Outeirino
Complex Carbohydrate Research Center
University of Georgia
220 Riverbend Road
30602 Athens
Georgia
USA
e-mail: uccajgo7@netscape.net



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