Subject: Re: CCL:AutoDock and protein-protein interactions

From: "Dr. Csaba Hetenyi" <csaba{at}ovrisc.mdche.u-szeged.hu>
Date: Sun, 6 Jul 2003 20:00:49 +0200 (CEST)

Hi,

Protein-peptide interactions were investigated in the following paper. In
one case, the peptide was "cut" from an other protein, mimicking its loop.
---
Hetenyi and van der Spoel,
Protein Sci. 2002 11(7) 1729-1737.
---
Large peptides may cause trouble for the search engine, that is larger
ones with more than 15 free torsions...
Best wishes,
Csaba

On 4 Jul 2003, Dominique Vlieghe wrote:

> Hello all,
> 
> 
> * A general question:
> I was wondering whether AutoDock is suitable for studying
> protein-protein interactions. In principle it is, but speed is the
> practical limitation I presume. Does anyone have experience with this?