From chemistry-request@ccl.net Tue Dec 23 18:36:12 2003 Received: from ccl.net (atlantis.ccl.net [192.148.249.4]) by server.ccl.net (8.12.8/8.12.8) with ESMTP id hBNNZeHt020720 for ; Tue, 23 Dec 2003 18:35:40 -0500 Received: from krakow.ccl.net (krakow.ccl.net [192.148.249.195]) by ccl.net (8.12.8/8.12.8/OSC 3.0) with ESMTP id hBNNZAEW010488; Tue, 23 Dec 2003 18:35:10 -0500 Date: Tue, 23 Dec 2003 18:35:10 -0500 (EST) From: Jan Labanowski To: chemistry)at(ccl.net cc: jkl)at(ccl.net, jlabanow)at(nd.edu Subject: Holiday Greetings... Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Spam-Status: No, hits=0.0 required=7.0 tests=USER_AGENT_PINE version=2.55 X-Spam-Checker-Version: SpamAssassin 2.55 (1.174.2.19-2003-05-19-exp) Dear CCL, The new year is coming... And the Holiday season is starting or ending... We usually feel something warm about this time of the year, yet, it is getting cold here in Columbus, Ohio. But not too cold... And we look towards a white snow to make everything look serene and pure (oh, well, these damned salt trucks will spoil everything, unless you are already out there, where, the trees smell...). We should be happy, even when the "orange" threat level is announced and the credible intelligence sources profess doom. Many of you will not even read this message on time, since they pulled the plug from the wall, and allowed their monitor screen to get dark. I will try to do some of this too, though the crackers nights are coming, and the viruses are brewing in those thousands of abandoned and helpless desktops left vulnerable to hackers who want to convert them into spam belching monsters. Some of you may remember the Internet of 10 years ago... When we used "finger" to check if our friend sits in front of his computer. And when the e-mail message was a touch from a fellow or friend. New mail arrived... Who can this be?... Oh well... This is history now... Some of us look at our mailboxes with disgust, sorting though tons of garbage... Some wonder how many relevant messages the spam filters removed from our view. Some just stopped using e-mail... Human nature once again took a gift from heaven and turned it to waste. To some extent it probably happens due to passive acceptance of all of us, who assume that if something is legal, and if there is money to be made on this, it will happen, whether we want it or not. The "good" and "bad" does not exist anymore, since it tends to be biased -- my "good" may not be your "good". So we let lawyers decide. Socially unacceptable behavior does not bring the condemnation... For the most part, we are all anonymous, and there is no society any more. And we escape this loneliness and lack of belonging by embracing our families (which again, statistically, we tend to change much too often...). The CCL gives me some sense of belonging, beside my other environments. I hope it also gives the same sense to you. Now the warning... CCL may go through a few convulsions... I will need to move it to another IP address space and to new computers... Be patient with me... If it does not work for a few days, just keep trying. Some issues are totally beyond my control, and some problems will just attest that I am learning how to deal with registrars, name servers, and legal mambo-jumbo... But let us hope for the seamless transition. Happy Holidays and best of luck and happiness in the coming 2004. Jan Labanowski jkl)at(ccl.net/jkl)at(ccl.net/jlabanow)at(nd.edu From chemistry-request@ccl.net Tue Dec 23 03:32:49 2003 Received: from lipid.biocomp.unibo.it (lipid.biocomp.unibo.it [137.204.193.11]) by server.ccl.net (8.12.8/8.12.8) with ESMTP id hBN8WHHt001291 for ; Tue, 23 Dec 2003 03:32:18 -0500 Received: from atp.lan.biocomp.unibo.it (atp.biocomp.unibo.it [137.204.193.243]) by lipid.biocomp.unibo.it (Postfix) with ESMTP id 1736F27A7A for ; Tue, 23 Dec 2003 09:37:16 +0100 (CET) Delivered-To: ivan!at!lipid.biocomp.unibo.it X-Received: by lipid.biocomp.unibo.it (Postfix, from userid 520) id 60B7A27A7A; Mon, 22 Dec 2003 19:53:53 +0100 (CET) X-Received: from localhost (localhost [127.0.0.1]) by lipid.biocomp.unibo.it (Postfix) with ESMTP id 3AE822EAED for ; Mon, 22 Dec 2003 19:53:53 +0100 (CET) Date: Mon, 22 Dec 2003 19:53:53 +0100 (CET) From: To: Ivan Rossi Subject: Bologna Winter School 2004 Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=iso-8859-1 ReSent-Date: Tue, 23 Dec 2003 09:31:57 +0100 (CET) Resent-From: Ivan Rossi Resent-To: CompChem Mailing List ReSent-Subject: Bologna Winter School 2004 ReSent-Message-ID: X-Spam-Status: No, hits=1.7 required=7.0 tests=FROM_ENDS_IN_NUMS,MAILTO_TO_SPAM_ADDR,NO_REAL_NAME, RESENT_TO,USER_AGENT_PINE version=2.55 X-Spam-Level: * X-Spam-Checker-Version: SpamAssassin 2.55 (1.174.2.19-2003-05-19-exp) Content-Transfer-Encoding: 8bit X-MIME-Autoconverted: from QUOTED-PRINTABLE to 8bit by server.ccl.net id hBN8WnHt001307 Bologna Winter School 2004 THE STATE OF THE ART OF PROTEIN-PROTEIN INTERACTION NETWORKS The role of the "in silico" approach Bologna, ITALY, February 8-14, 2004 http://www.biocomp.unibo.it/school/html2004/ The main topic that will be explained and debated are:global approaches to protein-protein interactions, protein complexes and proteome organisation in different organisms, reliability of experimental protein-protein interaction data, modular organisation of cellular networks, computational methods for the prediction of protein interactions. TEACHERS: Patrick Aloy EMBL, Heidelberg, DE Albert-Laszls Barabasi University of Notre Dame, IN, USA Peer Bork EMBL, Heidelberg, DE Alvis Brazma EBI-EMBL, Cambridge, UK Christine Brun LGPD-IBDM, Marseille, FR Rita Casadio University of Bologna, Bologna, IT Gianni Cesareni University "Tor Vergata", Rome, IT Anne-Claude Gavin Cellzome AG, Heidelberg, DE Manuela Helmer-Citterich University "Tor Vergata", Rome, IT David T. Jones University College, London, UK Pierre Legrain CEA Saclay, Gif-sur-Yvette, FR Arthur Lesk Cambridge University, Cambridge, UK Christian van Mering EMBL, Heidelberg, DE Janet Thornton EBI-EMBL, Cambridge, UK Alfonso Valencia CNB-CSIC, Cantoblanco, ES Shoshana Wodak Universiti Libre de Bruxelles, BE PROVISIONAL PROGRAM Monday, 9 Global approaches to protein-protein interactions (Arthur Lesk, Pierre Legrain, Anne-Claude Gavin) Tuesday, 10 Function prediction and protein networks (Manuela Helmer-Citterich, Patrick Aloy, Christine Brun) Wednesday, 11 Prediction of protein-protein interactions (Peer Bork, Gianni Cesareni, David Jones, Alvis Brazma) Thursday, 12 Modular organisation of cellular networks: the computational approach (Alfonso Valencia, Shoshana Wodak) Round Table discussion Students are invited to submit a Poster and to present it during the Round Table discussion Friday, 13 Complexity in protein interaction networks (Janet Thornton, Albert-Laszlo Barabasi) School chairs: Prof. Rita Casadio Prof. Lanfranco Masotti Scientific Committee R.Casadio, D.Jones, A.Tramontano, A.Valencia Organising Committee R.Casadio Local Committee E. Capriotti, M. Compiani, P. Fariselli, P.L. Martelli, I. Rossi, G. Tasco. APPLICATION should be submitted by e-mail to: e-mail: school2004!at!biocomp.unibo.it Maximum number of partecipants is limited to 40 students. For Application send a short C.V. to school2004!at!biocomp.unibo.it. You will be notified by e-mail of acceptance. DEADLINE for application is January 16, 2004 FOR LIVING EXPENSES AN OFFER IS AVAILABLE: a package of 500 EURO that covers materials, lunches, coffee breaks and social dinner. TWO OFFERS FOR THE ACCOMODATION AT THE ERASMUS COLLEGE, IN DOWNTOWN BOLOGNA, ARE ALSO AVAILABLE: 160 EURO per person for a double room (6 nights) 260 EURO per person for a single room, if available (6 nights). For further details, please visit http://www.biocomp.unibo.it/school/html2004/ or mail to school2004!at!biocomp.unibo.it University of Bologna CIRB (INTERDEPARTMENTAL CENTER FOR BIOTECHNOLOGY) CORSO DI LAUREA IN BIOTECNOLOGIE European Science Foundation INTEGRATED APPROACHES FOR FUNCTIONAL GENOMICS Interuniversitary Consortium for Biotechnology Istituto Nazionale Biostrutture Biosistemi Marino Golinelli Foundation O.N.L.U.S. Interdeparmental Centre "L.Galvani" for Studies on Complex Systems FIRB for Bioinformatics (MIUR) Organisation: AIRBBC Associazione Italiana per la Ricerca in Biofisica e Biologia Computazionale From chemistry-request@ccl.net Tue Dec 23 08:26:09 2003 Received: from cuces.unisi.it (cuces.unisi.it [193.205.4.2]) by server.ccl.net (8.12.8/8.12.8) with ESMTP id hBNDPbHt007387 for >ccl.net>; Tue, 23 Dec 2003 08:25:38 -0500 Received: from CONVERSION-DAEMON.cuces.unisi.it by cuces.unisi.it (PMDF V6.2-X17 #30546) id <01L4JE9OI5NK003JVI<>cuces.unisi.it> for chemistry<>ccl.net; Tue, 23 Dec 2003 14:25:34 +0100 (MET) Received: from zoe.unisi.it (zoe.smin.unisi.it [172.16.54.58]) by cuces.unisi.it (PMDF V6.2-X17 #30546) with ESMTP id <01L4JE9M9W3I003JW0<>cuces.unisi.it> for chemistry<>ccl.net; Tue, 23 Dec 2003 14:25:32 +0100 (MET) Date: Tue, 23 Dec 2003 14:22:04 +0100 From: Andrea Tafi >unisi.it> Subject: MM tors. param. for Ph-C(H)(C2H5)(Ph) In-reply-to: <463fe45b23.45b23463fe<>imap.georgetown.edu> X-Sender: tafi/mailsrv.unisi.it@127.0.0.1 To: chemistry<>ccl.net Message-id: <5.2.0.9.0.20031223131732.02779c20@127.0.0.1> MIME-version: 1.0 X-Mailer: QUALCOMM Windows Eudora Version 5.2.0.9 Content-type: text/plain; charset=us-ascii; format=flowed X-Spam-Status: No, hits=-0.5 required=7.0 tests=IN_REP_TO version=2.55 X-Spam-Checker-Version: SpamAssassin 2.55 (1.174.2.19-2003-05-19-exp) Dear CLLers, I'm looking for the Amber torsional parameter(s) associated to the bond connecting a phenyl ring to an aliphatic carbon atom, in the particular molecular context described hereafter: Ph-C(H)(C2H5)-Ph. I would appreciate your reply! Thank you in advance! best wishes, Andrea Tafi