Subject: RE: Snake plot program

From: Mads Nørregaard-Madsen <MN$at$nuevolution.com>
Date: Thu, 5 Feb 2004 14:55:37 +0100

Hi Jan,

Alternatively you could consider TOPPRED (http://bioweb.pasteur.fr/seqanal/interfaces/toppred.html), which produce nice plots of TM proteins, although the sequence is not included in the plot.

Best regards,
Mads

Mads Nxrregaard-Madsen, Ph.D.
Director of Molecular Design
Nuevolution A/S
Rxnnegade 8
DK-2100 Copenhagen
DENMARK
Email: mn$at$nuevolution.com

-----Original Message-----
From: Jan Torleif Pedersen [mailto:JATP$at$lundbeck.com] 
Sent: Wednesday, February 04, 2004 1:31 PM
To: chemistry$at$ccl.net
Subject: CCL:Snake plot program

Greetings,

I am looking for a program that is able to make snake like plots for protein
sequences of transmembrane proteins.
Is anyone here aware of such programs ?

		Regards  -- Jan

Dr. Jan Torleif Pedersen
Section head, Bioinformatics
Department of Molecular Genetics
H. Lundbeck A/S
Ottiliavej 9, 2500 DK-Valby
Denmark
phone: +45 36 43 28 87
FAX: +45 36 43 82 53
email: jatp$at$lundbeck.com

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