From chemistry-request@ccl.net Mon Apr 26 04:45:43 2004
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Subject: CCL: Where can I find this basis set
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Hi!

Thank you for your comments on my previous questions!

I am searching for this basis set. As mentioned in International Journal of Quantum Chemistry, Vol. 72, 221(1999), "The C and O basis sets are derived from the van Diujneveldt 9s5p primitive sets [26],which are contracted to 4s3 p based on a 5211 contraction of the s space and a 311 contraction of the p space. These basis sets are at least of double- z quality and are frequently employed in the theoretical literature [22, 27]. "

I searched the reference of that article, but there is no detailed information about this basis set. I hope that you would not mind telling me how and where I can find this basis set.

Thank you for your help!

Sincerely yours

Xin, Liu



From chemistry-request@ccl.net Sun Apr 25 14:49:20 2004
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Subject: Problems with CCSD(T) jobs
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Despite having 143 GB of disk space and 1 GB of memory, I am unable to run
the following job on my Windows machine for CF3CNO:

 %mem=1000MB
 %chk=cf3cno
 Default route:  MaxDisk=48GB
 ---------------------------------------------
 #CCSD(T,conver=5,full)/6-311+G(2d) scfcyc=500
 ---------------------------------------------

and I get the following error:

 **** Warning!!: The largest alpha MO coefficient is  0.93604856D+02

 Estimate disk for full transformation   889596368 words.
 Semi-Direct transformation.
 ModeAB=           4 MOrb=             1 LenV=     130390762
 LASXX=    128120103 LTotXX=   171968404 LenRXX=   214233243
 LTotAB=    42264839 MaxLAS=   266972895 LenRXY=           0
 NonZer=   298505045 LenScr=   449821184 LnRSAI=     2810241
 LnScr1=     5240320 LExtra=           0 Total=    672104988
 MaxDsk=           0 SrtSym=           T ITran=            5
 File extend in NtrExt1 failed; probably out of disk space.

Can anyone suggest a way I can get around this problem?  I should have
enough disk space and memory, but I can't seem to get around this disk
problem.

Ruth

============================================================
Ruth Tanner, B.Sc. M.Sc.                 rtanner(at)uoguelph.ca
------------------------------------------------------------
ruth_tanner(at)yahoo.com			 rtanner(at)uwo.ca
============================================================




From chemistry-request@ccl.net Mon Apr 26 02:58:52 2004
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Date: Mon, 26 Apr 2004 10:00:01 +0200
From: Harald Lanig <Harald.Lanig*at*chemie.uni-erlangen.de>
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Subject: 18th Molecular Modelling Workshop - May 18-19, 2004 in Erlangen, 
 Germany: 2nd Circular
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Dear list members,

let me please point your attention to 18th Darmstaedter Molecular
Modelling Workshop taking place in Erlangen, Germany from May 18 to 19,
2004. The registration deadline is extended until April, 30 2004!

Although the official conference language is German, this information
may be useful to a lot of readers of this list. For further information
about the Workshop please see the URL

http://www.chemie.uni-erlangen.de/ccc/conference/darmstadt.html

The 2nd Circular is available via the URL
http://www.chemie.uni-erlangen.de/ccc/conference/mmws04/circular2de.html

Kind regards,
Harald Lanig

------------------------------------------------------------------------
 Dr. Harald Lanig            Universitaet Erlangen/Nuernberg
 Computer-Chemie-Centrum     Naegelsbachstr. 25, D-91052 Erlangen
 
 Phone +49(0)9131-85 26525   Mailto:lanig*at*chemie.uni-erlangen.de
 Fax   +49(0)9131-85 26565   http://www.ccc.uni-erlangen.de/lanig
------------------------------------------------------------------------


From chemistry-request@ccl.net Mon Apr 26 13:19:56 2004
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Date: Mon, 26 Apr 2004 14:20:22 -0400
From: Kadir Diri <kadir^at^visual1.chem.pitt.edu>
Subject: Re: CCL:Problems with CCSD(T) jobs
In-reply-to: <Pine.GHP.4.21.0404251545340.29247-100000^at^ccshst01.cs.uoguelph.ca>
To: Ruth Tanner <rtanner^at^uoguelph.ca>
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Hi! I assume you are using 32-bit windows. On 32-bit operating system 
you cannot use all of your available scratch because the 32-bit gaussian 
is coded such that it cannot use more than 16 gb of disk. That is, you 
can split your .rwf file into 8 pieces, each having max size 2gb, 
because one cannot create files larger than 2 gb in 32-bit windows.
CCSD(T) jobs are extremely I/O intensive and use a lot of disk. You can 
actually roughly estimate the space required. If you exceed the 16 gb 
limit, you will have to use smaller basis set or run the calculation on 
a 64-bit operating system, with gaussian compiled in 64-bit.
By the way, if you want only the CCSD, I think Molpro can do a direct 
calculation, avoiding the need for large disk. But I don`t know if the 
triples are also direct. 32-bit molpro also has the 16 gb disk limit.
Regards,
kadir

Ruth Tanner wrote:

>Despite having 143 GB of disk space and 1 GB of memory, I am unable to run
>the following job on my Windows machine for CF3CNO:
>
> %mem=1000MB
> %chk=cf3cno
> Default route:  MaxDisk=48GB
> ---------------------------------------------
> #CCSD(T,conver=5,full)/6-311+G(2d) scfcyc=500
> ---------------------------------------------
>
>and I get the following error:
>
> **** Warning!!: The largest alpha MO coefficient is  0.93604856D+02
>
> Estimate disk for full transformation   889596368 words.
> Semi-Direct transformation.
> ModeAB=           4 MOrb=             1 LenV=     130390762
> LASXX=    128120103 LTotXX=   171968404 LenRXX=   214233243
> LTotAB=    42264839 MaxLAS=   266972895 LenRXY=           0
> NonZer=   298505045 LenScr=   449821184 LnRSAI=     2810241
> LnScr1=     5240320 LExtra=           0 Total=    672104988
> MaxDsk=           0 SrtSym=           T ITran=            5
> File extend in NtrExt1 failed; probably out of disk space.
>
>Can anyone suggest a way I can get around this problem?  I should have
>enough disk space and memory, but I can't seem to get around this disk
>problem.
>
>Ruth
>
>============================================================
>Ruth Tanner, B.Sc. M.Sc.                 rtanner^at^uoguelph.ca
>------------------------------------------------------------
>ruth_tanner^at^yahoo.com			 rtanner^at^uwo.ca
>============================================================
>
>
>
>
>-= This is automatically added to each message by the mailing script =-
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>and send your message to:  CHEMISTRY^at^ccl.net
>
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>
>
>
>
>  
>




From chemistry-request@ccl.net Mon Apr 26 13:15:45 2004
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Subject: 2004 Computational Chemistry Gordon Research Conference
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This note is to announce the 2004 Computational Chemistry Gordon Research
Conference, to be held July 4-9, 2004, in New Hampshire.

The conference will offer a mix of quantum chemistry and statistical
mechanics methodological and applications talks.  Topic covered this year
include molecular nanotechnology, applications of computational chemistry
to environmental issues, studies of enzymatic reactions, and many others.
Here is a link to read more about the meeting:

http://www.grc.uri.edu/programs/2004/compchem.htm

If you are interested, please apply soon to be accepted to the meeting  -
attendance is extremely limited.

William Swope, Chair
2004 Computational Chemistry Gordon Research Conference



From chemistry-request@ccl.net Mon Apr 26 12:14:01 2004
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Date: Mon, 26 Apr 2004 10:14:49 -0700
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To: Ruth Tanner <rtanner*at*uoguelph.ca>
CC: chemistry*at*ccl.net
Subject: Re: CCL:Problems with CCSD(T) jobs
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Hi Ruth,

Put a line bellow the %mem=1000MB
%rwf=gxx1.rwf,2000MB,gxx2.rwf,2000MB,gxx3.rwf,2000MB,gxx4.rwf,2000MB

It should work. Good luck.

-- 
Best regards,
 Qiang                            mailto:qiangl*at*uci.edu


=================Original message text===============

Despite having 143 GB of disk space and 1 GB of memory, I am unable to run
the following job on my Windows machine for CF3CNO:

 %mem=1000MB
 %chk=cf3cno
 Default route:  MaxDisk=48GB
 ---------------------------------------------
 #CCSD(T,conver=5,full)/6-311+G(2d) scfcyc=500
 ---------------------------------------------

and I get the following error:

 **** Warning!!: The largest alpha MO coefficient is  0.93604856D+02

 Estimate disk for full transformation   889596368 words.
 Semi-Direct transformation.
 ModeAB=           4 MOrb=             1 LenV=     130390762
 LASXX=    128120103 LTotXX=   171968404 LenRXX=   214233243
 LTotAB=    42264839 MaxLAS=   266972895 LenRXY=           0
 NonZer=   298505045 LenScr=   449821184 LnRSAI=     2810241
 LnScr1=     5240320 LExtra=           0 Total=    672104988
 MaxDsk=           0 SrtSym=           T ITran=            5
 File extend in NtrExt1 failed; probably out of disk space.

Can anyone suggest a way I can get around this problem?  I should have
enough disk space and memory, but I can't seem to get around this disk
problem.

Ruth

============================================================
Ruth Tanner, B.Sc. M.Sc.                 rtanner*at*uoguelph.ca
------------------------------------------------------------
ruth_tanner*at*yahoo.com                    rtanner*at*uwo.ca
============================================================




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==============End of original message text===========



From chemistry-request@ccl.net Mon Apr 26 10:18:40 2004
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Message-ID: <024401c42ba1$ebc37200$222fe39e*at*lc.ehu.es>
From: "Pablo Vitoria" <qibvigap*at*lg.ehu.es>
To: "Ruth Tanner" <rtanner*at*uoguelph.ca>, "CCL" <CHEMISTRY*at*ccl.net>
References: <Pine.GHP.4.21.0404251545340.29247-100000*at*ccshst01.cs.uoguelph.ca>
Subject: Re: CCL:Problems with CCSD(T) jobs
Date: Mon, 26 Apr 2004 17:19:51 +0200
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	servernd.ccl.net

Hi Ruth,

You are probably hitting the 2 GB file size limit in Windows, because the
"Estimate disk for full transformation" is ~7 GB. One solution is to split
your . rwf file in several ones, each of them smaller than 2GB. For example:

%rwf=rwf1,1900MB,rwf2,1900MB,rwf3,1900MB,rwf4,1900MB,rwf5,1900MB

will use 5 .rwf files of 1900 MB maximum each, for a total of about 9 GB.
Instead of rwf1,...rwf5,... you can use the name you prefer.

Just be aware that there is a limit for the input lines to Gaussian, I think
it is 500 characters.

Best regards

Pablo

--------------------------------------------------------
Pablo Vitoria Garcia
Dpto. Qummica Inorganica, Facultad de Ciencias
Universidad del Pams Vasco (UPV/EHU)
Aptdo. 644
48080 Bilbao (Bizkaia)

Tfno. 94 6015992
Fax. 94 6013500
----- Original Message ----- 
From: "Ruth Tanner" <rtanner*at*uoguelph.ca>
To: "CCL" <chemistry*at*server.ccl.net>
Sent: Sunday, April 25, 2004 9:50 PM
Subject: CCL:Problems with CCSD(T) jobs


|
| Despite having 143 GB of disk space and 1 GB of memory, I am unable to run
| the following job on my Windows machine for CF3CNO:
|
|  %mem=1000MB
|  %chk=cf3cno
|  Default route:  MaxDisk=48GB
|  ---------------------------------------------
|  #CCSD(T,conver=5,full)/6-311+G(2d) scfcyc=500
|  ---------------------------------------------
|
| and I get the following error:
|
|  **** Warning!!: The largest alpha MO coefficient is  0.93604856D+02
|
|  Estimate disk for full transformation   889596368 words.
|  Semi-Direct transformation.
|  ModeAB=           4 MOrb=             1 LenV=     130390762
|  LASXX=    128120103 LTotXX=   171968404 LenRXX=   214233243
|  LTotAB=    42264839 MaxLAS=   266972895 LenRXY=           0
|  NonZer=   298505045 LenScr=   449821184 LnRSAI=     2810241
|  LnScr1=     5240320 LExtra=           0 Total=    672104988
|  MaxDsk=           0 SrtSym=           T ITran=            5
|  File extend in NtrExt1 failed; probably out of disk space.
|
| Can anyone suggest a way I can get around this problem?  I should have
| enough disk space and memory, but I can't seem to get around this disk
| problem.
|
| Ruth
|
| ============================================================
| Ruth Tanner, B.Sc. M.Sc.                 rtanner*at*uoguelph.ca
| ------------------------------------------------------------
| ruth_tanner*at*yahoo.com rtanner*at*uwo.ca
| ============================================================
|
|
|
|
| -= This is automatically added to each message by the mailing script =-
| To send e-mail to subscribers of CCL put the string CCL: on your Subject:
line
| and send your message to:  CHEMISTRY*at*ccl.net
|
| Send your subscription/unsubscription requests to:
CHEMISTRY-REQUEST*at*ccl.net
| HOME Page: http://www.ccl.net   | Jobs Page: http://www.ccl.net/jobs
|
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From chemistry-request@ccl.net Mon Apr 26 10:50:40 2004
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To: chminf-l.-at-.listserv.indiana.edu, chemistry.-at-.server.ccl.net,
   qsar_society.-at-.accelrys.com
Subject: Second Call for Papers - ACS CINF program at Philadelphia
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From: Osman F Guner <osman.-at-.accelrys.com>
Date: Mon, 26 Apr 2004 08:51:50 -0700
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We still have some room for papers in the sessions listed below.=20

Deadline for paper submission is April 28th.  Use the OASYS (
http://oasys.acs.org/oasys.htm) to submit your abstracts.  Click on the=20
chemical information division link (CINF) and follow the instructions.=20


Philadelphia,
Aug. 22-26, 2004=20
Division of Chemical Information=20

Program Chair: O. F. G=FCner, Accelrys Inc, 9685 Scranton Road, San Diego, =

CA 92121-3752, 858-799-5341, fax 858-799-5100, e-mail: osman.-at-.accelrys.com=20

Advances in virtual high-throughput screening (Cosponsored with COMP and=20
MEDI). O. F. G=FCner
Emerging technologies in chemical information S. B. Singh, Concurrent=20
Pharmaceuticals, 502 West Office Center Drive, Fort Washington, PA 19034,=20
215-461-2048, fax 215-461-2006, e-mail: ssingh.-at-.concurrentpharma.com
Emerging technologies: Image data management L. A. Harmon, Striatus, 8703=20
Webster Hills Rd., Dexter, MI 48130, 734-426-6272, fax 734-661-0409,=20
e-mail: lharmon.-at-.striatus.com
General papers O. F. G=FCner
Graduate Education in Chemical Informatics: Needs and Opportunities=20
(Cosponsored with CHED, YCC and PRES). G. D. Wiggins, School of=20
Informatics, Indiana University, 901 East Tenth Street, Bloomington, IN=20
47408-3912, (812) 856-1086, fax (812) 856-4764, e-mail:=20
wiggins.-at-.indiana.edu
Informatics challenges in outsourcing your research (Cosponsored with=20
MEDI). T. Wright, MDL Information Systems, Inc, 14600 Catalina Street, San =

Leandro, CA 94577, 510-357-2222, fax 510-614-3652, e-mail: terryw.-at-.mdli.com
Integration of analytical and experimental data into enterprise-wide=20
system (Cosponsored with ANLY, COMP and MEDI). L. A. Harmon
Poster session O. F. G=FCner
Posters on chemical Information instruction (Cosponsored with PRES). E.=20
Kajosalo, Libraries, Massachusetts Institute of Technology, 77=20
Masschusetts Avenue, Room 14S-134, Cambridge, MA 02155, 617-253-9795, fax=20
617-253-6365, e-mail: kajosalo.-at-.mit.edu
Scholarly publishing: Challenges for peer review in the Digital World=20
(Cosponsored with COMSCI). D. P. Martinsen, ACS Publications, American=20
Chemical Society, 1155 16th Street NW, Washington, DC 20036, 240 683-0217, =

e-mail: d=5Fmartinsen.-at-.acs.org
Scholarly publishing: Initiatives and electronic publishing (Cosponsored=20
with COMSCI). L. R. Solla, Physical Sciences Library, Cornell University,=20
293 Clark Library, Cornell University, Ithaca, NY 14853-2501,=20
607-255-4016, fax 607-255-5288, e-mail: lrm1.-at-.cornell.edu; E. Kajosalo
Scholarly publishing: Pespectives on Open Access (Cosponsored with=20
COMSCI). A. Twiss-Brooks, University of Chicago, John Crerar Library, 5730 =

S. Ellis Ave, Chicago, IL 60637-1403, 773-702-8777, e-mail:=20
atbrooks.-at-.uchicago.edu; B. Town, Kilmorie Consulting, 24A Elsinore Road,=20
London, SE23 2SL, England, +44 20 8699 9764, e-mail:=20
bill.-at-.town9674.fsnet.co.uk=20

=20

Osman F. G=FCner, Ph.D.
Executive Director
Cheminformatics and Rational Drug Design
Accelrys Inc.,  858-799-5341
osman.-at-.accelrys.com, http://www.accelrys.com
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<br><font size=3D2 face=3D"sans-serif">We still have some room for papers in
the sessions listed below. &nbsp;</font>
<br><font size=3D2 face=3D"sans-serif"><br>
Deadline for paper submission is April 28th. &nbsp;Use the OASYS (</font><f=
ont size=3D3 face=3D"Arial">http://oasys.acs.org/oasys.htm</font><font size=
=3D2 face=3D"sans-serif">)
to submit your abstracts. &nbsp;Click on the chemical information division
link (CINF) and follow the instructions.</font><font size=3D3> <br>
</font>
<br>
<form action=3Dhttp://oasys.acs.org/acs/callforpapers.cgi method=3Dpost><fo=
nt size=3D5><b><br>
Philadelphia,<br>
Aug. 22-26, 2004</b></font><font size=3D3> </font>
<p><font size=3D4><b>Division of Chemical Information</b></font><font size=
=3D3>
</font>
<p><font size=3D3><br>
Program Chair: O. F. G=FCner, Accelrys Inc, 9685 Scranton Road, San Diego,
CA 92121-3752, 858-799-5341, fax 858-799-5100, e-mail: osman.-at-.accelrys.com
</font>
<p><font size=3D3><b><br>
Advances in virtual high-throughput screening</b> (Cosponsored with COMP
and MEDI). O. F. G=FCner</font>
<p><font size=3D3><b>Emerging technologies in chemical information</b> S.
B. Singh, Concurrent Pharmaceuticals, 502 West Office Center Drive, Fort
Washington, PA 19034, 215-461-2048, fax 215-461-2006, e-mail: ssingh@concur=
rentpharma.com</font>
<p><font size=3D3><b>Emerging technologies: Image data management</b> L.
A. Harmon, Striatus, 8703 Webster Hills Rd., Dexter, MI 48130, 734-426-6272,
fax 734-661-0409, e-mail: lharmon.-at-.striatus.com</font>
<p><font size=3D3><b>General papers</b> O. F. G=FCner</font>
<p><font size=3D3><b>Graduate Education in Chemical Informatics: Needs and
Opportunities</b> (Cosponsored with CHED, YCC and PRES). G. D. Wiggins,
School of Informatics, Indiana University, 901 East Tenth Street, Bloomingt=
on,
IN 47408-3912, (812) 856-1086, fax (812) 856-4764, e-mail: wiggins@indiana.=
edu</font>
<p><font size=3D3><b>Informatics challenges in outsourcing your research</b>
(Cosponsored with MEDI). T. Wright, MDL Information Systems, Inc, 14600
Catalina Street, San Leandro, CA 94577, 510-357-2222, fax 510-614-3652,
e-mail: terryw.-at-.mdli.com</font>
<p><font size=3D3><b>Integration of analytical and experimental data into
enterprise-wide system</b> (Cosponsored with ANLY, COMP and MEDI). L. A.
Harmon</font>
<p><font size=3D3><b>Poster session</b> O. F. G=FCner</font>
<p><font size=3D3><b>Posters on chemical Information instruction</b> (Cospo=
nsored
with PRES). E. Kajosalo, Libraries, Massachusetts Institute of Technology,
77 Masschusetts Avenue, Room 14S-134, Cambridge, MA 02155, 617-253-9795,
fax 617-253-6365, e-mail: kajosalo.-at-.mit.edu</font>
<p><font size=3D3><b>Scholarly publishing: Challenges for peer review in
the Digital World</b> (Cosponsored with COMSCI). D. P. Martinsen, ACS Publi=
cations,
American Chemical Society, 1155 16th Street NW, Washington, DC 20036, 240
683-0217, e-mail: d=5Fmartinsen.-at-.acs.org</font>
<p><font size=3D3><b>Scholarly publishing: Initiatives and electronic publi=
shing</b>
(Cosponsored with COMSCI). L. R. Solla, Physical Sciences Library, Cornell
University, 293 Clark Library, Cornell University, Ithaca, NY 14853-2501,
607-255-4016, fax 607-255-5288, e-mail: lrm1.-at-.cornell.edu; E. Kajosalo</font>
<p><font size=3D3><b>Scholarly publishing: Pespectives on Open Access</b>
(Cosponsored with COMSCI). A. Twiss-Brooks, University of Chicago, John
Crerar Library, 5730 S. Ellis Ave, Chicago, IL 60637-1403, 773-702-8777,
e-mail: atbrooks.-at-.uchicago.edu; B. Town, Kilmorie Consulting, 24A Elsinore
Road, London, SE23 2SL, England, +44 20 8699 9764, e-mail: bill.-at-.town9674.fs=
net.co.uk
</font>
<p></form>
<p><font size=3D3>&nbsp; <br>
</font><font size=3D2 face=3D"sans-serif"><br>
Osman F. G=FCner, Ph.D.<br>
Executive Director<br>
Cheminformatics and Rational Drug Design<br>
Accelrys Inc., &nbsp;858-799-5341<br>
osman.-at-.accelrys.com, http://www.accelrys.com</font>
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