From chemistry-request@ccl.net Mon Sep 27 04:49:25 2004
Received: from smtp.uibk.ac.at (lmr1.uibk.ac.at [138.232.1.142])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8R9nOOB016972
	for <chemistry^at^ccl.net>; Mon, 27 Sep 2004 04:49:24 -0500
Received: from [138.232.38.84] (pc4-c727.uibk.ac.at [138.232.38.84])
	by smtp.uibk.ac.at (8.12.10/8.12.10/F1) with ESMTP id i8RA08xm010029
	for <chemistry^at^ccl.net>; Mon, 27 Sep 2004 12:00:08 +0200
Message-ID: <4157E4D7.6010906^at^uibk.ac.at>
Date: Mon, 27 Sep 2004 12:00:55 +0200
From: Thierry Langer <thierry.langer^at^uibk.ac.at>
Reply-To: langer^at^inteligand.com
Organization: University of Innsbruck / Inte:Ligand GmbH
User-Agent: Mozilla Thunderbird 0.6 (Windows/20040502)
X-Accept-Language: en-us, en
MIME-Version: 1.0
To: chemistry^at^ccl.net
Subject: New: ilib diverse 1.0 library generator
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Content-Transfer-Encoding: 7bit
X-Spam-Score: -3.0 () RCV_SMTP_UIBK
X-Scanned-By: MIMEDefang 2.42 at uibk.ac.at
X-Spam-Status: No, hits=0.0 required=7.5 tests=none autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

Dear Colleagues,
This is to announce our new software tool for generation of
compound libraries starting from molecular fragment files.
You may download the installation files for ilib diverse 1.0 which
runs under MS Windows, Linux, AIX, Solaris, IRIX, and MacOS X
> from our web-site at http://www.inteligand.com
For obtaining a one month evaluation license free of any charge
please register at the following URL:
http://www.inteligand.com/cgi-bin/ilibdiverse/register.pl
We would like to encourage you to try our new software and to get
back to us with feedback !
With best regards
TL

------------------------------------------------------
Dr. Thierry Langer, CEO
Inte:Ligand Software-Entwicklungs- und Consulting GmbH.
A-2344 Maria Enzersdorf, Clemens Maria Hofbauer-Gasse 6
Phone +43-6991-5075252   Fax +43-1-8174955-1371
Web http://www.inteligand.com
------------------------------------------------------


From chemistry-request@ccl.net Mon Sep 27 22:39:35 2004
Received: from mailwasher-b.lanl.gov (mailwasher.lanl.gov [192.65.95.54])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8S3dYqm020654
	for <chemistry^at^ccl.net>; Mon, 27 Sep 2004 22:39:34 -0500
Received: from mailrelay3.lanl.gov (mailrelay3.lanl.gov [128.165.4.104])
	by mailwasher-b.lanl.gov (8.12.11/8.12.11/(ccn-5)) with ESMTP id i8S3oP5f013496
	for <chemistry)at(ccl.net>; Mon, 27 Sep 2004 21:50:26 -0600
Received: from t12mail.lanl.gov (t12mail.lanl.gov [128.165.22.99])
	by mailrelay3.lanl.gov (8.12.11/8.12.11/(ccn-5)) with ESMTP id i8S3oKcY014342
	for <chemistry)at(ccl.net>; Mon, 27 Sep 2004 21:50:20 -0600
Received: from zinc.lanl.gov (zinc.lanl.gov [128.165.22.33])
	by t12mail.lanl.gov (Postfix) with ESMTP id 8C2F53BA67
	for <chemistry)at(ccl.net>; Mon, 27 Sep 2004 21:43:13 -0600 (MDT)
Date: Mon, 27 Sep 2004 21:50:20 -0600 (MDT)
From: Artem Masunov <amasunov)at(t12.LANL.gov>
X-X-Sender: amasunov)at(zinc.lanl.gov
Reply-To: AMasunov)at(t12.LANL.gov
To: chemistry)at(ccl.net
Subject: semiempirical Raman spectra
Message-ID: <Pine.LNX.4.44.0409272144370.7511-100000)at(zinc.lanl.gov>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII
X-PMX-Version: 4.6.0.99824
X-PMX-Version: 4.6.1.107272
X-Spam-Status: No, hits=0.0 required=7.5 tests=none autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

Dear All,

We would like to simulate Raman spectra of some large molecules at AM1
level. Unfortunately, g03 does that numerically and the calculation is too
heavy after 300 atoms.

Does anyone know some software out there which has analytical second 
derivatives for Raman spectra intensities at semiempirical level?

Thanks in advance,
Artem

-- 
________________________________________________________
     __    ___________Artem Masunov AMasunov)at(T12.LANL.gov
    /  \  /  __   __  \   www.t12.lanl.gov/home/amasunov
   /    \/\  \ \  \ \  \  505.665.2635, Fax:505.665.3909
  /  /\  \ \  \ \  \ \  \  Theoretical Division, MS B268
 /  ____  \ \  \ \  \ \  \    Los Alamos National Lab
/__/\ _/\ _\ \ _\ \ _\ \ _\     Los Alamos NM 87545
\ _\/  \/__/\ __/\ __/\ __/ ____________________________
           Let the beauty we love be what we do. -- Rumi
Men are mortal; but ideas are immortal -- Walter Lippman



From chemistry-request@ccl.net Tue Sep 28 09:00:14 2004
Received: from smtp2.ruc.dk (smtp2.ruc.dk [130.225.220.22])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SE0CTS002211
	for <chemistry.-at-.ccl.net>; Tue, 28 Sep 2004 09:00:13 -0500
Received: by smtp2.ruc.dk (Postfix, from userid 1001)
	id B9A31238160; Tue, 28 Sep 2004 16:10:47 +0200 (CEST)
Received: from virgil.ruc.dk (virgil.ruc.dk [130.225.220.110])
	by smtp2.ruc.dk (Postfix) with ESMTP id 3E67D2380F4
	for <chemistry.-at-.ccl.net>; Tue, 28 Sep 2004 16:10:46 +0200 (CEST)
Received: from VIRGIL/SpoolDir by virgil.ruc.dk (Mercury 1.47);
    28 Sep 04 16:10:46 +0100
Received: from SpoolDir by VIRGIL (Mercury 1.47); 28 Sep 04 16:10:37 +0100
From: "Jens Spanget-Larsen" <spanget.-at-.virgil.ruc.dk>
Organization: Roskilde Universitetscenter
To: chemistry.-at-.ccl.net
Date: Tue, 28 Sep 2004 16:10:13 +0200
Subject: (Fwd) Re: CCL:configuration interaction
Reply-To: spanget.-at-.ruc.dk
Message-ID: <41598CE5.27843.F43EAC@localhost>
Priority: normal
X-mailer: Pegasus Mail for Windows (v4.01)
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net
X-Spam-Report: 
X-Spam-Status: No, hits=0.2 required=7.5 tests=BAD_X_HEADERS autolearn=no 
	version=2.61
X-Spam-Level: 

Dear Corinne!

In general, the results of a CIS calculation strongly 
overestimate the transition energies. The situation is 
improved by inclusion of doubly excited configurations in the 
CI expansion, but the convergence of this expansion is very 
slow and the calculational effort increases dramatically. 
Anyway, CISD in Gaussian98 does not predict excited states. I 
suggest you try Time Dependent Density Functional Theory (TD 
DFT), f.ex. TD B3LYP. This model frequently leads to excellent 
predictions of electronic spectra within a reasonable 
computation time. See the recent papers by Fabian and 
coworkers for a discussion of the possibilities and a 
comparison of methods:

J. Fabian, L.A. Diaz, G. Seifert, T. Niehaus, "Calculation of 
excitation energies of organic chromophores: a critical 
evaluation", J. Mol. Struct. (Theochem) 594 (2002) 41-53.

J. Fabian, "Electronic excitation of sulfur-organic compounds 
- performance of time-dependent density functional theory", 
Theor. Chem. Acc. 106 (2001) 199-217.

Yours, Jens >--<


> Dear Netters,
> 
> I try to study excited states of an organic molecule using G98.
> I would like to find the energy of the four lower excited states. I use 
> CI.
> 
> I did CIS and getthe information I wanted but with wrong values for the 
> energy of the excited states. so I would like to include double 
> substitutions in the calculation. I use the keyword CISD : I get the 
> total energy corrected by the CI but I could not get the energy of the 
> excited states.
> Is it possible to have this information with G98?
> Any advice for another code?
> 
> thanks, bye,
> C.
> 
> Criez gratuitement votre Yahoo! Mail avec 100 Mo de stockage !
> Criez votre Yahoo! Mail
> 
> Le nouveau Yahoo! Messenger est arrivi ! Dicouvrez toutes les nouveautis 
> pour dialoguer instantaniment avec vos amis. Tilichargez GRATUITEMENT 
> ici !

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
JENS SPANGET-LARSEN         Office:         +45 4674 2710
Department of Chemistry     Fax:            +45 4674 3011
Roskilde University (RUC)   Mobile:         +45 2320 6246
P.O.Box 260                 E-Mail:        spanget.-at-.ruc.dk
DK-4000 Roskilde, Denmark   http://virgil.ruc.dk/~spanget
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=



From chemistry-request@ccl.net Mon Sep 27 19:11:32 2004
Received: from smtp02.mrf.mail.rcn.net (smtp02.mrf.mail.rcn.net [207.172.4.61])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8S0BVqm009591
	for <chemistry.-at-.ccl.net>; Mon, 27 Sep 2004 19:11:31 -0500
Received: from 216-15-124-41.c3-0.smr-ubr3.sbo-smr.ma.cable.rcn.com ([216.15.124.41] helo=anick000)
	by smtp02.mrf.mail.rcn.net with smtp (Exim 3.35 #7)
	id 1CC5l4-0003Oj-00; Mon, 27 Sep 2004 20:22:18 -0400
Message-ID: <001701c4a50a$25072de0$297c0fd8.-at-.cable.rcn.com>
From: "David J Anick" <david.anick.-at-.rcn.com>
To: "Silviu Zilberman" <silviu.-at-.princeton.edu>, <chemistry.-at-.ccl.net>
References: <41582A64.80802.-at-.Princeton.EDU>
Subject: Re: CCL:optimization with internal coordinates
Date: Mon, 27 Sep 2004 20:20:45 -0700
MIME-Version: 1.0
Content-Type: text/plain;
	charset="iso-8859-1"
Content-Transfer-Encoding: 7bit
X-Priority: 3
X-MSMail-Priority: Normal
X-Mailer: Microsoft Outlook Express 6.00.2800.1409
X-MimeOLE: Produced By Microsoft MimeOLE V6.00.2800.1409
X-Spam-Status: No, hits=3.7 required=7.5 tests=FVGT_m_MULTI_ODD2,
	RCVD_IN_DYNABLOCK,RCVD_IN_SORBS autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

Dear Silviu,

Jon Baker is now the lead programmer for a small
company started by Peter Pulay, called Parallel
Quantum Solutions.  The OPTIMIZE code and much more
have been implemented in a suite of programs that
PQS sells installed on parallel Linux boxes of 4 to 8
processors.  I have been using their code for over
a year and I consider it excellent.  (I get no royalty
for saying this.  They earned my respect the hard way.)

See the PQS web site, www.pqs-chem.com for
details of their products.  I believe they may still
allow a trial download of a Windows version of
the software, with a free license valid for 3 months.
Jon Baker himself can be reached at baker.-at-.pqs-chem.com
He and everyone else at the company have provided
exemplary service.

David Anick PhD MD
david.anick.-at-.rcn.com

----- Original Message ----- 
From: "Silviu Zilberman" <silviu.-at-.princeton.edu>
To: <chemistry.-at-.ccl.net>
Sent: Monday, September 27, 2004 7:57 AM
Subject: CCL:optimization with internal coordinates


> Hi,
>
> I just recently came across a paper by Jon Baker, Alain Kessi and
> Bernard Delley [J. Chem. Phys. 105(1), 192, (1996): "The generation and
> use of delocalized internal coordinates in geometry optimization"] that
> describes an efficient algorithm for geometry optimization in
> delocalized internal coordinates. One of the references there is to a
> suite of programs by J. Baker called OPTIMIZE, that carries out that
> particular algorithm. I could not find on the web any trace of neither
> the author, nor the computer code. I did find that it was incorporated
> in two commercial products.
>
> 1. Does anyone has a pointer to the author of the code or the code itself?
> 2. Are there free computer codes that implements that algorithm?
> 3. Are there free computer codes that implement other internal
> coordinates optimization, such as redundant internal coordinates method?
>
> Any suggestions are greatly appreciated,
> Silviu.
>
> -- 
> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
> Zilberman Silviu, PhD
>
> 213 Frick Laboratory,
> Department of Chemistry,
> Princeton University
> Princeton, NJ 08544, USA
>
> phone: 609-258-1834
> fax:   609-258-6746
> silviu.-at-.Princeton.EDU
> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>
>
>
>
>
> -= This is automatically added to each message by the mailing script =-
> To send e-mail to subscribers of CCL put the string CCL: on your Subject:
line
> and send your message to:  CHEMISTRY.-at-.ccl.net
>
> Send your subscription/unsubscription requests to:
CHEMISTRY-REQUEST.-at-.ccl.net
> HOME Page: http://www.ccl.net   | Jobs Page: http://www.ccl.net/jobs
>
> If your mail is bouncing from CCL.NET domain send it to the maintainer:
> Jan Labanowski,  jlabanow.-at-.nd.edu (read about it on CCL Home Page)
> -+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+
>
>
>
>
>




From chemistry-request@ccl.net Tue Sep 28 16:45:04 2004
Received: from hermes2.cf.ac.uk (hermes2.cf.ac.uk [131.251.0.113])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SLj2TS029827
	for <CHEMISTRY[at]ccl.net>; Tue, 28 Sep 2004 16:45:03 -0500
Received: from maincf1p.cf.ac.uk ([131.251.4.20])
	by hermes2.cf.ac.uk with esmtp (Exim 4.34)
	id 1CCPwr-00033n-CF
	for CHEMISTRY[at]ccl.net; Tue, 28 Sep 2004 22:55:49 +0100
Received: from Cardiff_University-MTA by MAINCF1P.cf.ac.uk
	with Novell_GroupWise; Tue, 28 Sep 2004 22:55:49 +0100
Message-Id: <s159ebf5.083[at]MAINCF1P.cf.ac.uk>
X-Mailer: Novell GroupWise Internet Agent 6.5.1 
Date: Tue, 28 Sep 2004 22:55:24 +0100
From: "Dimitrios Vlachakis" <VlachakisD1[at]Cardiff.ac.uk>
To: <CHEMISTRY[at]ccl.net>
Subject: mutant proteins....
Mime-Version: 1.0
x-priority: 1
Content-Type: text/plain; charset=US-ASCII
Content-Transfer-Encoding: 7bit
Content-Disposition: inline
X-Spam-Status: No, hits=5.5 required=7.5 tests=ALUSSINAN_5,IMPRONONCABLE_1,
	NO_RDNS2,X_PRIORITY_HIGH autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

** High Priority **

Dear Holly,

first of all I will asume that you are looking for some freeware. The most user
friendly (in terms of installation and actually using the software is the Deep
View 
Swiss-PdbViewer. It runs for all major platforms (mac 9&10, windows, linux and
iris) and installing it just involves hitting the Ok button a few times. All you
have to do then is to load your protein.pdb file, select the amino acid you want
to mutate and mutate to another on from a list (all with the mouse). 

The software can be found here:                http://www.expasy.org/spdbv/
And a tutorial on protein mutation here:    
http://www.expasy.org/spdbv/text/mutation.htm


A quick comment though: I do not think it is very wise to do mutate amino acids
in a protein using freeware. And there is nothing wrong with freeware, but it is
not up to the job (most of the times). Mutating an amino acid with any piece of
software involves the substitution of the original side chain of the aa with the
one of the new aa. That is quite easy to do and is the easiest part of the whole
mutation job. The problem is how viable and realistic and mutant protein is. The
only way to fix that is to minimise energetically the protein, so that the
energy will drop and the protein will adopt a more stable conformation. Now,
doing that with freeware is simply IMPOSSIBLE! Deep View has implemented a
minimisation algorithm, but it is very poor especailly when dealing with
proteins. It uses the GROMOS 43B1 force field that is only good enough to make
room for new (potentially larger) amino acids. So, it will get stuck in a local
minima as it it will not be able to by pass through high energy barriers. So, i
suggest, that you should either get your hands on a decent software package that
can do both mutating and minimising in a proper scientific way (such as Sybyl,
Moe, hyperchem etc) or if you are going to use freeware to do the mutating part
(such as Deep Blue) find a reliable minimising package. a 30 day evaluation of
hyperchem is available from here: (http://www.hyper.com)

Hope that helps,




Dimitrios Vlachakis                
PhD student in Molecular Modelling 
Medicinal Chemistry Group          
Welsh School of Pharmacy           
Cardiff University                 
                                   
Redwood Building                   
King Edward VII Avenue             
CF10 3XF                           
Cardiff                            
Wales, UK                          
                                   
tel. +44 2920 877221               
tel. +44 2920 874551 (lab)         
fax. +44 2920 874537               

...................................................................................


From chemistry-request@ccl.net Mon Sep 27 17:01:18 2004
Received: from web52004.mail.yahoo.com (web52004.mail.yahoo.com [206.190.39.60])
	by server.ccl.net (8.12.8/8.12.8) with SMTP id i8RM1Gqm002660
	for <chemistry~at~ccl.net>; Mon, 27 Sep 2004 17:01:17 -0500
Message-ID: <20040927221203.97376.qmail~at~web52004.mail.yahoo.com>
Received: from [128.112.141.35] by web52004.mail.yahoo.com via HTTP; Mon, 27 Sep 2004 15:12:03 PDT
Date: Mon, 27 Sep 2004 15:12:03 -0700 (PDT)
From: Konstantin Kudin <konstantin_kudin~at~yahoo.com>
Subject: aligning structures via vector products - any good methods?
To: chemistry~at~ccl.net
In-Reply-To: <415827BD.3080907~at~Princeton.EDU>
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
X-Spam-Status: No, hits=1.0 required=7.5 tests=IMPRONONCABLE_1 autolearn=no 
	version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

 Hi there,

 I would like to align 2 structures via rotating one of them such that
the sum of vector products between them is 0. More specifically:

\sum_i m_i (r_1i x r_2i) = 0

 Does anyone know of a good method that does that?

 Thanks!
 Kostya

P.S. 

 One can also align things via list squares fit by minimizing
{\sum_i m_i |r_1i - r_2i|^2}, but this is not what I need. The
reference for this method is:
S. K.Kearsley, Acta Cryst.  A45, 208 (1989).
http://www.ccl.net/cca/software/SOURCES/FORTRAN/fitest/index.shtml

__________________________________________________
Do You Yahoo!?
Tired of spam?  Yahoo! Mail has the best spam protection around 
http://mail.yahoo.com 


From chemistry-request@ccl.net Tue Sep 28 17:21:06 2004
Received: from smtp.ucla.edu (smtp.ucla.edu [169.232.46.138])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SML5TS031315
	for <chemistry|at|ccl.net>; Tue, 28 Sep 2004 17:21:06 -0500
Received: from mail.ucla.edu (mail.ucla.edu [169.232.47.135])
	by smtp.ucla.edu (8.12.11/8.12.11) with ESMTP id i8SMVu9e005096
	for <chemistry|at|ccl.net>; Tue, 28 Sep 2004 15:31:56 -0700
Received: from [137.78.33.197] (varies04012101237.jpl.nasa.gov [137.78.33.197])
	(authenticated bits=0)
	by mail.ucla.edu (8.13.1/8.13.1) with ESMTP id i8SMVpeu031493
	for <chemistry|at|ccl.net>; Tue, 28 Sep 2004 15:31:56 -0700
Message-ID: <4159E657.7010501|at|ucla.edu>
Date: Tue, 28 Sep 2004 15:31:51 -0700
From: Douglas Sievers <dsievers|at|ucla.edu>
User-Agent: Mozilla Thunderbird 0.6 (X11/20040708)
X-Accept-Language: en-us, en
MIME-Version: 1.0
To: chemistry|at|ccl.net
Subject: Need programs for calculating band-structure in 1-dimension systems
References: <F61BBB893620C643A8055CFE1F342FE20FCBBD|at|mn-europe.materianova.be>
In-Reply-To: <F61BBB893620C643A8055CFE1F342FE20FCBBD|at|mn-europe.materianova.be>
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
X-Probable-Spam: no
X-Spam-Hits: 0
X-Scanned-By: smtp.ucla.edu
X-Spam-Status: No, hits=0.0 required=7.5 tests=none autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

Dear CCLers,

I need to perform some band structure calculations on 1-dimensional 
systems. Does anyone know any FREE programs available for this? (at 
least, they must be free for academic or non-commercial license).

I would prefer programs that use LCAO methods instead of plane-waves. I 
could use plane-wave methods and project the result onto atomic orbitals 
using CPMD, but I'm unfimiliar with the intricacies of plane-wave 
methods (that is how the result varies with cut-off energy, etc.).

Thank you all. I will post a summary of the results at a later date.

Doug Sievers


From chemistry-request@ccl.net Tue Sep 28 12:28:08 2004
Received: from ds20.mpi-muelheim.mpg.de (ds20e.mpi-muelheim.mpg.de [192.108.70.44])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SHS6TS017078
	for <chemistry|at|ccl.net>; Tue, 28 Sep 2004 12:28:07 -0500
Received: from [172.17.5.20] (mcsenn.mpi-muelheim.mpg.de [172.17.5.20])
	by ds20.mpi-muelheim.mpg.de (8.12.10/8.12.8) with ESMTP id i8SHcucY126017
	for <chemistry|at|ccl.net>; Tue, 28 Sep 2004 19:38:56 +0200 (MEST)
Mime-Version: 1.0 (Apple Message framework v619)
Message-Id: <4B117E43-1175-11D9-9EBF-000A95DBD3F8|at|mpi-muelheim.mpg.de>
Content-Type: text/plain; charset=ISO-8859-1; delsp=yes; format=flowed
To: CCL <chemistry|at|ccl.net>
From: Hans Martin Senn <senn|at|mpi-muelheim.mpg.de>
Subject: Origin of dipole moment in Gaussian
Date: Tue, 28 Sep 2004 19:39:05 +0200
X-Mailer: Apple Mail (2.619)
X-Spam-Status: No, hits=0.9 required=7.5 tests=MY_BAD_DOT autolearn=no 
	version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net
Content-Transfer-Encoding: 8bit
X-MIME-Autoconverted: from quoted-printable to 8bit by server.ccl.net id i8SHS8TS017084

Dear all

This question is almost embarrassing, but I was unable to find a  
definite statement as to the choice of origin of the dipole moment in  
Gaussian 03's output. I have come across hints for both the centre of  
mass and the centre of nuclear charges. Can anybody provide me with an  
authoritative answer?


Best regards

Hans

........................................................................ 
.
Dr. Hans Martin Senn
Max-Planck-Institut f|r Kohlenforschung
Kaiser-Wilhelm-Platz 1                          Phone +49 (0)208 306  
2163
D-45470 M|lheim an der Ruhr                       Fax +49 (0)208 306  
2996
Germany                                   E-mail  
senn|at|mpi-muelheim.mpg.de



From chemistry-request@ccl.net Tue Sep 28 07:46:56 2004
Received: from pernis.its.uu.se (pernis.its.uu.se [130.238.4.153])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SCktTS026988
	for <chemistry{at}ccl.net>; Tue, 28 Sep 2004 07:46:55 -0500
Received: by pernis.its.uu.se (Postfix, from userid 205)
	id 1743FFA2; Tue, 28 Sep 2004 14:57:43 +0200 (MSZ)
Received: from pernis.its.uu.se(127.0.0.1) by pernis.its.uu.se via virus-scan 
	id s339; Tue, 28 Sep 04 14:57:39 +0200
Received: from [130.238.236.136] (kemi136.kemi.uu.se [130.238.236.136])
	(using TLSv1 with cipher RC4-SHA (128/128 bits))
	(No client certificate requested)
	by pernis.its.uu.se (Postfix) with ESMTP id 7B89517049
	for <chemistry{at}ccl.net>; Tue, 28 Sep 2004 14:57:39 +0200 (MSZ)
Mime-Version: 1.0 (Apple Message framework v619)
Content-Transfer-Encoding: 7bit
Message-Id: <B96BD05E-114E-11D9-AEFC-000393BE8F62{at}kemi.uu.se>
Content-Type: text/plain; charset=US-ASCII; format=flowed
To: chemistry{at}ccl.net
From: Torben Rasmussen <Torben.Rasmussen{at}kemi.uu.se>
Subject: CCL:Hydrophobic surface area
Date: Tue, 28 Sep 2004 15:03:00 +0200
X-Mailer: Apple Mail (2.619)
X-Spam-Status: No, hits=0.0 required=7.5 tests=none autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

Hi,

I am looking for programs/algorithms/approaches to evaluate hydrophobic 
surface AND surface area for, primarily, organic molecules. Both free 
and commercial programs, suitable for a small research budget, are of 
interest. Pointers to literature discussing this subject will also be 
most appreciated!

I will summarize to the list.

Thanks!
Torben.

--
Torben Rasmussen
Uppsala University
Department of Organic Chemistry
E-mail: Torben.Rasmussen{at}kemi.uu.se



From chemistry-request@ccl.net Tue Sep 28 16:22:34 2004
Received: from sandmail01.sd.accelrys.com (fw1.sd.accelrys.com [209.120.169.30])
	by server.ccl.net (8.12.8/8.12.8) with ESMTP id i8SLMXTS029070
	for <CHEMISTRY_at_ccl.net>; Tue, 28 Sep 2004 16:22:33 -0500
To: CHEMISTRY_at_ccl.net
Subject: CCL: Description of a Lebedev Grid
MIME-Version: 1.0
X-Mailer: Lotus Notes Release 6.5.1 January 21, 2004
Message-ID: <OF11DEC224.F0A5DC67-ON88256F1D.00761DC7-88256F1D.007669A3_at_accelrys.com>
From: Jeff Nauss <jnauss_at_accelrys.com>
Date: Tue, 28 Sep 2004 14:33:30 -0700
X-MIMETrack: Serialize by Router on sandmail01/Server/Accelrys(Release 6.5.2|June 01, 2004) at
 09/28/2004 02:33:45 PM,
	Serialize complete at 09/28/2004 02:33:45 PM
Content-Type: multipart/alternative; boundary="=_alternative 0076699C88256F1D_="
X-Spam-Status: No, hits=1.3 required=7.5 tests=HTML_20_30,HTML_MESSAGE,
	MK_BAD_HTML_04 autolearn=no version=2.61
X-Spam-Checker-Version: SpamAssassin 2.61 (1.212.2.1-2003-12-09-exp) on 
	servernd.ccl.net

This is a multipart message in MIME format.
--=_alternative 0076699C88256F1D_=
Content-Type: text/plain; charset="US-ASCII"

I am seeking a very basic non-mathematical description of a Lebedev 
angular grid in English.  Every hit I can find in the literature or web is 
either in Russian or assumes the reader knows what the grid is.

Any reference or website will be useful.

Thanks,
Jeff
--
Jeffrey L. Nauss, Ph.D.
Lead Training Scientist

Accelrys
9685 Scranton Road
San Diego, CA 92121-1761

Phone: 858-799-5555
Fax: 858-799-5100
E-mail: jnauss_at_accelrys.com
http://www.accelrys.com/training

--=_alternative 0076699C88256F1D_=
Content-Type: text/html; charset="US-ASCII"


<br><font size=2 face="sans-serif">I am seeking a very basic non-mathematical
description of a Lebedev angular grid in English. &nbsp;Every hit I can
find in the literature or web is either in Russian or assumes the reader
knows what the grid is.</font>
<br>
<br><font size=2 face="sans-serif">Any reference or website will be useful.</font>
<br>
<br><font size=2 face="sans-serif">Thanks,</font>
<br><font size=2 face="sans-serif">Jeff</font>
<br><font size=2 face="sans-serif">--<br>
Jeffrey L. Nauss, Ph.D.<br>
Lead Training Scientist<br>
<br>
Accelrys<br>
9685 Scranton Road<br>
San Diego, CA 92121-1761<br>
<br>
Phone: 858-799-5555<br>
Fax: 858-799-5100<br>
E-mail: jnauss_at_accelrys.com<br>
http://www.accelrys.com/training<br>
</font>
--=_alternative 0076699C88256F1D_=--


