From owner-chemistry@ccl.net Tue Dec 19 11:33:00 2023 From: "Anatoli Korkin korkin_+_nanoandgiga.com" To: CCL Subject: CCL: Updating software links at ASDN.NET Message-Id: <-55066-231219113125-1020-oB4mxsLHohZUVKDDCjYRGw : server.ccl.net> X-Original-From: "Anatoli Korkin" Date: Tue, 19 Dec 2023 11:31:21 -0500 Sent to CCL by: "Anatoli Korkin" [korkin(_)nanoandgiga.com] Hello CCLers, I am finally planning to update software links at ASDN.NET: https://asdn.net/asdn/links/software.php Your suggestions for adding new links, correcting/removing outdated links and other advice will be highly appreciate. Best regards, Anatoli Korkin From owner-chemistry@ccl.net Tue Dec 19 12:07:01 2023 From: "Elaine Meng meng#cgl.ucsf.edu" To: CCL Subject: CCL: ChimeraX 1.7 release Message-Id: <-55067-231219115245-8045-OLa+L/rnjL0VdAXo3nVw8Q|-|server.ccl.net> X-Original-From: "Elaine Meng" Date: Tue, 19 Dec 2023 11:52:42 -0500 Sent to CCL by: "Elaine Meng" [meng .. cgl.ucsf.edu] UCSF ChimeraX version 1.7 has been released! ChimeraX includes user documentation and is free for noncommercial use. Download for Windows, Linux, and MacOS from: https://www.rbvi.ucsf.edu/chimerax/download.html Updates since version 1.6 (May 2023) include: New graphical interfaces: - Fetch By ID - Map Filter - Adjust Torsions (new section in Build Structure) - Adjust Angles defined by three atoms (also in Build Structure) Open command options to: - specify model number - combine incoming session with existing session - designate map as difference map (show +/-contours automatically) - fetch by IUPAC name (also in Build Structure tool) - fetch EMDB map + fit structures Mouse mode updates: - new mouse mode to center the view on the clicked item - better separation of trackpad multitouch zoom and rotate - Z-translation by additionally pressing Ctrl in a translation mouse mode Other: - invert selection with left/right arrow keys - mcopy command to copy settings from one atomic structure to another - save GLTF options to cull backfaces, omit per-vertex colors, omit normals - volume defaultvalues command to set defaults for subsequently opened maps - info command saveFile option (list selection, attribute values, etc.) - opening docking results automatically starts ViewDockX - button to save Blast Protein results to TSV For details, please see the ChimeraX change log: https://www.rbvi.ucsf.edu/trac/ChimeraX/wiki/ChangeLog From owner-chemistry@ccl.net Tue Dec 19 14:49:01 2023 From: "John Keller jwkeller[]alaska.edu" To: CCL Subject: CCL: Updating software links at ASDN.NET Message-Id: <-55068-231219143926-4015-J/I3Gx4atcN6yPRvevBnyQ/./server.ccl.net> X-Original-From: John Keller Content-Type: multipart/alternative; boundary="0000000000009e09c5060ce2056c" Date: Tue, 19 Dec 2023 10:39:04 -0900 MIME-Version: 1.0 Sent to CCL by: John Keller [jwkeller(0)alaska.edu] --0000000000009e09c5060ce2056c Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable The current URL of Hyperchem is www.hypercubeusa.com John Keller On Tue, Dec 19, 2023 at 9:03=E2=80=AFAM Anatoli Korkin korkin_+_nanoandgiga= .com < owner-chemistry[]ccl.net> wrote: > > Sent to CCL by: "Anatoli Korkin" [korkin(_)nanoandgiga.com] > Hello CCLers, > > I am finally planning to update software links at ASDN.NET: > > https://asdn.net/asdn/links/software.php > > Your suggestions for adding new links, correcting/removing outdated links > and > other advice will be highly appreciate. > > Best regards, > Anatoli Korkin > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --0000000000009e09c5060ce2056c Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
The current URL of Hyperchem is www.hypercubeusa.com
John Keller

=

= On Tue, Dec 19, 2023 at 9:03=E2=80=AFAM Anatoli Korkin korkin_+_nanoandgiga.com <owner-chemistry[]ccl.net> wrote:

Sent to CCL by: "Anatoli=C2=A0 Korkin" [korkin(_)nanoandgiga.com= ]
Hello CCLers,

I am finally planning to update software links at ASDN.NET:

https://asdn.net/asdn/links/software.php

Your suggestions for adding new links, correcting/removing outdated links a= nd
other advice will be highly appreciate.

Best regards,
Anatoli Korkin



-=3D This is automatically added to each message by the mailing script =3D-=
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--0000000000009e09c5060ce2056c-- From owner-chemistry@ccl.net Tue Dec 19 17:13:00 2023 From: "Phil Hasnip phil.hasnip*|*york.ac.uk" To: CCL Subject: CCL: Updating software links at ASDN.NET Message-Id: <-55069-231219160749-29743-L/mQ0NfAWi3vlw8ssjhfsw,+,server.ccl.net> X-Original-From: Phil Hasnip Content-Type: multipart/alternative; boundary="000000000000a36b3d060ce34100" Date: Tue, 19 Dec 2023 21:07:27 +0000 MIME-Version: 1.0 Sent to CCL by: Phil Hasnip [phil.hasnip\a/york.ac.uk] --000000000000a36b3d060ce34100 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable The CASTEP URL is correct, but it's free for all academics, not just UK. All the best, Phil Hasnip On Tue, 19 Dec 2023, 21:00 John Keller jwkeller[]alaska.edu, < owner-chemistry . ccl.net> wrote: > The current URL of Hyperchem is www.hypercubeusa.com > John Keller > > > On Tue, Dec 19, 2023 at 9:03=E2=80=AFAM Anatoli Korkin korkin_+_nanoandgi= ga.com < > owner-chemistry]~[ccl.net> wrote: > >> >> Sent to CCL by: "Anatoli Korkin" [korkin(_)nanoandgiga.com] >> Hello CCLers, >> >> I am finally planning to update software links at ASDN.NET: >> >> https://asdn.net/asdn/links/software.php >> >> Your suggestions for adding new links, correcting/removing outdated link= s >> and >> other advice will be highly appreciate. >> >> Best regards, >> Anatoli Korkin >> >> >> >> -=3D This is automatically added to each message by the mailing script = =3D- >> E-mail to subscribers: CHEMISTRY]~[ccl.net or use:>> >> E-mail to administrators: CHEMISTRY-REQUEST]~[ccl.net or use>> >> >> --000000000000a36b3d060ce34100 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
The CASTEP URL is correct, but it's free for all acad= emics, not just UK.=C2=A0

All = the best,

Phil Hasnip

On Tue, 19 Dec 2023, 21:00 John Keller jwkeller[]alaska.edu, <owner= -chemistry . ccl.net> wrote:
<= div dir=3D"ltr">The current URL of Hyperchem is www.hypercubeusa.com<= div>John Keller


On Tue, Dec 19, 2023 at 9:03=E2=80=AFAM= Anatoli Korkin korkin_+_nanoandgiga.com <owner-chemistry]~[ccl.= net> wrote:

Sent to CCL by: "Anatoli=C2=A0 Korkin" [korkin(_)nanoandg= iga.com]
Hello CCLers,

I am finally planning to update software links at ASDN.NET:

https://asdn.net/asdn/links/software.php

Your suggestions for adding new links, correcting/removing outdated links a= nd
other advice will be highly appreciate.

Best regards,
Anatoli Korkin



-=3D This is automatically added to each message by the mailing script =3D-=
E-mail to subscribers: CHEMISTRY]~[ccl.net or use:
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Before posting, check wait time at: http://www.ccl.net

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