From owner-chemistry@ccl.net Fri Sep 6 15:56:01 2024 From: "Michael Morgan michaelmorgan937]-[gmail.com" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55215-240906155004-15959-fyN8xcnHtIRMc6FDXUDdqg() server.ccl.net> X-Original-From: "Michael Morgan" Date: Fri, 6 Sep 2024 15:50:02 -0400 Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] Hi everyone, Is there any web application I can use to draw a structure, request a simple, on-the-fly qm calculation, and show a specific orbital from the calculation result? It is for an undergraduate class, so the orbital plot just need to be qualitatively correct. Semi-empirical calculations should do the job. Any suggestion? Thank you very much. Michael From owner-chemistry@ccl.net Fri Sep 6 17:15:00 2024 From: "=?UTF-8?Q?Francisco_Nu=C3=B1ez_Zarur?= franuz21() gmail.com" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55216-240906171310-12031-Kbuj2Dorw7ZlOLHs8/bWcg~!~server.ccl.net> X-Original-From: =?UTF-8?Q?Francisco_Nu=C3=B1ez_Zarur?= Content-Type: multipart/alternative; boundary="00000000000035b29d062179df26" Date: Fri, 6 Sep 2024 16:12:35 -0500 MIME-Version: 1.0 Sent to CCL by: =?UTF-8?Q?Francisco_Nu=C3=B1ez_Zarur?= [franuz21::gmail.com] --00000000000035b29d062179df26 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hi Michael. I think ChemCompute can do what you need ( https://chemcompute.org/). It's pretty straightforward to use, and you can use more resources with an institutional email. I use it in my teaching and works perfectly. Regards, Dr. Francisco N=C3=BA=C3=B1ez Zarur El vie, 6 sept 2024 a las 15:52, Michael Morgan michaelmorgan937]-[gmail.co= m () escribi=C3=B3: > > Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] > Hi everyone, > > Is there any web application I can use to draw a structure, request a > simple, > on-the-fly qm calculation, and show a specific orbital from the > calculation > result? It is for an undergraduate class, so the orbital plot just need t= o > be > qualitatively correct. Semi-empirical calculations should do the job. > > Any suggestion? Thank you very much. > Michael > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --00000000000035b29d062179df26 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable

Hi Michael. I think ChemCompute can do= what you need (https://chemcompute.or= g/). It's pretty straightforward to use, and you can use more resou= rces with an institutional email. I use it in my teaching and works perfect= ly.=C2=A0

Regards,

=
Dr. Fra= ncisco N=C3=BA=C3=B1ez Zarur




El vie, 6 sept 2024 a las 15:52, = Michael Morgan michaelmorgan937]-[gmail.com (<owner-chemistry%a%ccl.net>) escribi=C3=B3:

Sent to CCL by: "Michael=C2=A0 Morgan" [michaelmorgan937*
gmail.com] Hi everyone,

Is there any web application I can use to draw a structure, request a simpl= e,
on-the-fly qm calculation, and show a specific orbital from the calculation=
result? It is for an undergraduate class, so the orbital plot just need to = be
qualitatively correct. Semi-empirical calculations should do the job.

Any suggestion? Thank you very much.
Michael



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--00000000000035b29d062179df26-- From owner-chemistry@ccl.net Fri Sep 6 17:50:01 2024 From: "John Keller jwkeller!^!alaska.edu" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55217-240906172432-15211-xBz9zx2R/HDps/BgEiTFuQ]*[server.ccl.net> X-Original-From: John Keller Content-Type: multipart/alternative; boundary="0000000000000ca83706217a086c" Date: Fri, 6 Sep 2024 13:24:14 -0800 MIME-Version: 1.0 Sent to CCL by: John Keller [jwkeller::alaska.edu] --0000000000000ca83706217a086c Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable WebMO demo page is free. https://www.webmo.net/demo/ Its fast: an MO calculation on acrolein took 3 sec/ On Fri, Sep 6, 2024 at 12:48=E2=80=AFPM Michael Morgan michaelmorgan937]-[g= mail.com wrote: > > Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] > Hi everyone, > > Is there any web application I can use to draw a structure, request a > simple, > on-the-fly qm calculation, and show a specific orbital from the > calculation > result? It is for an undergraduate class, so the orbital plot just need t= o > be > qualitatively correct. Semi-empirical calculations should do the job. > > Any suggestion? Thank you very much. > Michael > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --0000000000000ca83706217a086c Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
WebMO demo page is free.=C2=A0https://www.webmo.net/demo/=C2=A0 Its fast: an=C2=A0 MO cal= culation on acrolein took 3 sec/



On Fri, Sep 6= , 2024 at 12:48=E2=80=AFPM Michael Morgan michaelmorgan937]-[gmail.com <owner-chemistry^_^ccl.net> wrote:

Sent to CCL by: "Michael=C2=A0 Morgan" [michaelmorgan937*gmail.com] Hi everyone,

Is there any web application I can use to draw a structure, request a simpl= e,
on-the-fly qm calculation, and show a specific orbital from the calculation=
result? It is for an undergraduate class, so the orbital plot just need to = be
qualitatively correct. Semi-empirical calculations should do the job.

Any suggestion? Thank you very much.
Michael



-=3D This is automatically added to each message by the mailing script =3D-=
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--0000000000000ca83706217a086c-- From owner-chemistry@ccl.net Fri Sep 6 18:24:01 2024 From: "Geoffrey Hutchison geoff.hutchison%x%gmail.com" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55218-240906172958-16976-wwlhmYQsWxauwntyging6Q]=[server.ccl.net> X-Original-From: Geoffrey Hutchison Content-Type: multipart/alternative; boundary="000000000000140e0206217a1b7c" Date: Fri, 6 Sep 2024 14:29:43 -0700 MIME-Version: 1.0 (Mimestream 1.3.8) Sent to CCL by: Geoffrey Hutchison [geoff.hutchison(a)gmail.com] --000000000000140e0206217a1b7c Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Check out the excellent https://molcalc.org/ from Jan Jensen: J. H. Jensen and J. C. Kromann, The Molecule Calculator: A Web Application for Fast Quantum Mechanics-Based Estimation of Molecular Properties, J. Chem. Educ., 2013, 90 (8), pp 1093=E2=80=931095. DOI: 10.1021/ed400164n The code is also open source: https://github.com/jensengroup/molcalc Best, -Geoff On Sep 6, 2024 at 3:50:02=E2=80=AFPM, Michael Morgan michaelmorgan937]-[gma= il.com < owner-chemistry .. ccl.net> wrote: > > Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] > Hi everyone, > > Is there any web application I can use to draw a structure, request a > simple, > on-the-fly qm calculation, and show a specific orbital from the > calculation > result? It is for an undergraduate class, so the orbital plot just need t= o > be > qualitatively correct. Semi-empirical calculations should do the job. > > Any suggestion? Thank you very much. > Michael > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --000000000000140e0206217a1b7c Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Check out the excellent=C2=A0https://m= olcalc.org/=C2=A0from Jan Jensen:

J. H. Jensen and J. C. Kromann,
The Molecule Calculator: A Web Application for Fast Quantum Mechan= ics-Based Estimation of Molecular Properties,
J. Chem= . Educ., 2013, 90 (8), pp 1093=E2=80=931095. DOI: 10.1021/ed400164n

The code is also open source:=C2= =A0https://github.com/je= nsengroup/molcalc=C2=A0

Best,
-Geoff


On Sep 6, 2024 at 3:50:02=E2=80= =AFPM, Michael Morgan michaelmorgan937]-[gmail= .com <owner-chemistry .. ccl= .net> wrote:
=20

Sent to CCL by: "Michael =C2=A0Morgan" [michaelmorgan937*= gmail.com]
Hi everyone,

Is there= any web application I can use to draw a structure, request a simple,
o= n-the-fly qm calculation, and show a specific orbital from the calculation =
result? It is for an undergraduate class, so the orbital plot just need= to be
qualitatively correct. Semi-empirical calculations should do the= job.

Any suggestion? Thank you very much.
Michael


-=3D This is automatically added to each message by the mailing script = =3D-
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E-mail to administrators: CHEMISTRY-REQUEST .. ccl.net or use
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--000000000000140e0206217a1b7c-- From owner-chemistry@ccl.net Fri Sep 6 18:59:00 2024 From: "Andre Farias de Moura moura^ufscar.br" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55219-240906175109-25980-XDIzfaxwAPhD92iEc6hvrw],[server.ccl.net> X-Original-From: Andre Farias de Moura Content-Type: multipart/alternative; boundary="00000000000010fe9f06217a67b1" Date: Fri, 6 Sep 2024 18:50:47 -0300 MIME-Version: 1.0 Sent to CCL by: Andre Farias de Moura [moura,ufscar.br] --00000000000010fe9f06217a67b1 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hi Michael, I use ChemCompute in my classes: https://chemcompute.org/ Runs smoothly even using a cell phone. Regards Andre On Fri, Sep 6, 2024 at 6:43=E2=80=AFPM Michael Morgan michaelmorgan937]-[gm= ail.com < owner-chemistry(a)ccl.net> wrote: > > Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] > Hi everyone, > > Is there any web application I can use to draw a structure, request a > simple, > on-the-fly qm calculation, and show a specific orbital from the > calculation > result? It is for an undergraduate class, so the orbital plot just need t= o > be > qualitatively correct. Semi-empirical calculations should do the job. > > Any suggestion? Thank you very much. > Michael > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --00000000000010fe9f06217a67b1 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hi Michael,
I use ChemCompute in my classes= : https://chemcompute.org/
Runs smoothly even using a cell phone.
Regards
Andre=

On Fri, Sep 6, 2024 at 6:43=E2=80=AFPM Michael Morgan michaelmorg= an937]-[gmail.com <owner-chemistry(a)ccl.net> wrote:

Sent to CCL by: "Michael=C2=A0 Morgan" [michaelmorgan937*gmail.com] Hi everyone,

Is there any web application I can use to draw a structure, request a simpl= e,
on-the-fly qm calculation, and show a specific orbital from the calculation=
result? It is for an undergraduate class, so the orbital plot just need to = be
qualitatively correct. Semi-empirical calculations should do the job.

Any suggestion? Thank you very much.
Michael



-=3D This is automatically added to each message by the mailing script =3D-=
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--00000000000010fe9f06217a67b1-- From owner-chemistry@ccl.net Fri Sep 6 19:34:01 2024 From: "Jans Alzate Morales jalzate+*+utalca.cl" To: CCL Subject: CCL: web application for orbital calculation and plot Message-Id: <-55220-240906171334-12070-vfeViEPGTWyUGHQ9bUu1fw(!)server.ccl.net> X-Original-From: Jans Alzate Morales Content-Language: es-ES Content-Type: multipart/alternative; boundary="_000_CPWP152MB5467DD454CEDA1446583C21AB89E2CPWP152MB5467LAMP_" Date: Fri, 6 Sep 2024 21:13:16 +0000 MIME-Version: 1.0 Sent to CCL by: Jans Alzate Morales [jalzate*utalca.cl] --_000_CPWP152MB5467DD454CEDA1446583C21AB89E2CPWP152MB5467LAMP_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Dear Michael, I hope you're doing great. You can try IQMol (http://www.iqmol.org/). It allows you to draw the structure and submit the QM calculation at a diff= erent level of theory using the server for a maximum of 10 minutes. I have calculated QM energies for the imidazole ring to calculate the pKa v= alue using IQMol. Best regards, Jans ********************************************** Jans Alzate-Morales, FRSC Pharmaceutical Chemist, PhD. in Chemistry Associate Professor Centre for Bioinformatics, Simulations and Modeling (CBSM) Universidad de Talca 1 Poniente 1141, Casilla 721, Talca - Chile Tel=E9fono: 56-71-201 798, Email: jalzatemorales+/-gmail.com or jalzate= +/-utalca.cl URL: http://cbsm.utalca.cl/?page_id=3D73 and http://doctorado.cbsm.cl De: owner-chemistry+jalzate=3D=3Dutalca.cl+/-ccl.net en nombre de Michael Morgan michaelmorgan937]-[gma= il.com Fecha: viernes, 6 de septiembre de 2024 a las 16:50 Para: Jans Alzate Morales Asunto: CCL: web application for orbital calculation and plot Sent to CCL by: "Michael Morgan" [michaelmorgan937*gmail.com] Hi everyone, Is there any web application I can use to draw a structure, request a simpl= e, on-the-fly qm calculation, and show a specific orbital from the calculation result? It is for an undergraduate class, so the orbital plot just need to = be qualitatively correct. Semi-empirical calculations should do the job. Any suggestion? Thank you very much. Michael -=3D This is automatically added to each message by the mailing script =3D-http://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp://www.ccl.net/chemistry/sub_unsub.shtmlhttp://www.ccl.net/spammers.txt--_000_CPWP152MB5467DD454CEDA1446583C21AB89E2CPWP152MB5467LAMP_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

Dear Michael,

 

I hope you're doing great.

You can try IQMol (http://www.iqmol.org/).

It allows you to draw the structure and submit the Q= M calculation at a different level of theory using the server for a maximum= of 10 minutes.

I have calculated QM energies for the imidazole ring= to calculate the pKa value using IQMol.

 

Best regards,

 

Jans

 

****************************************= ******

Jans Alzate-Morales, FRSC
Pharmaceutical Chemist, PhD. in Chemistry
Associate Professor
Centre for Bioinformatics, Simulations and Modeling (CBSM)
Universidad de Talca
1 Poniente 1141, Casilla 721, Talca - Chile  
Tel=E9fono: 56-71-201 798, 
Email: 
jalzatemorales+/-= gmail.com or jalzate+/-utalca.cl   URL: http://cb= sm.utalca.cl/?page_id=3D73   a= nd = http://doctorado.cbsm.cl  

 

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