From owner-chemistry@ccl.net Thu Mar 3 09:50:00 2022 From: "Luca Frediani luca.frediani---uit.no" To: CCL Subject: CCL: Support Ukrainian scientists Message-Id: <-54620-220303035131-27089-AeYeSwM4+8I6DcR44tHDwA\a/server.ccl.net> X-Original-From: Luca Frediani Content-Language: en-US Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=UTF-8; format=flowed Date: Thu, 3 Mar 2022 09:51:18 +0100 MIME-Version: 1.0 Sent to CCL by: Luca Frediani [luca.frediani.---.uit.no] This is a list of labs who intend to support Ukrainian scientists. Please add your lab/group to the list if you can do so. https://docs.google.com/spreadsheets/d/1jGFCqP2kj1ZAN6xy6EoRN1bozaggk9VEsbzYaIkkYcQ/edit#gid=0 Luca Frediani From owner-chemistry@ccl.net Thu Mar 3 17:33:00 2022 From: "Andrew DeYoung andrewdaviddeyoung##gmail.com" To: CCL Subject: CCL:G: Gaussian 09 and 16 compared for mundane calculations Message-Id: <-54621-220303173055-15779-yDgS9mZjHVKqnOFjb4M0/Q[#]server.ccl.net> X-Original-From: Andrew DeYoung Content-Type: multipart/alternative; boundary="00000000000041c62205d957f3c3" Date: Thu, 3 Mar 2022 17:30:46 -0500 MIME-Version: 1.0 Sent to CCL by: Andrew DeYoung [andrewdaviddeyoung(_)gmail.com] --00000000000041c62205d957f3c3 Content-Type: text/plain; charset="UTF-8" Hi, My institution has both Gaussian 09 and Gaussian 16, and I'm trying to decide which to use for my new project. (My background is in applications of MD simulations, and I'm quite new to quantum chemistry.) One reason to use 16 is that, well, it's the latest version. One reason to use 09 is for consistency; it's been used in our group a lot in the past. My colleague said he observed some different results from 09 and 16, though he didn't remember how large the differences were. I will likely do some of my own comparisons, but I am curious, does anyone have experience with this? The calculations I will be doing for my project are pretty mundane: using RHF to optimize geometry, and using MP2 to calculate the energy and extract charges with CHelpG. The basis sets I will use are fairly pedestrian -- 6-31G(d), cc-pVTZ, etc -- nothing particularly exotic. > From looking at this page ( https://gaussian.com/gdiffs/ ), it looks like Gaussian 16 mainly added new methods and basis sets. I can imagine that algorithm improvements/tweaks (faster, more effective parallelization, etc) could give rise to some numerical differences, but I would not expect these differences to be terribly significant for most properties. Is this your experience? Thanks for your time, Andrew Andrew DeYoung, PhD Department of Chemistry Carnegie Mellon University --00000000000041c62205d957f3c3 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hi,

My institution has both=C2=A0Gaussi= an 09 and Gaussian 16, and I'm trying to decide which to use for my new= project.=C2=A0 (My background is in applications of MD simulations, and I&= #39;m quite new to quantum chemistry.)=C2=A0 One reason to use 16 is that, = well, it's the latest version.=C2=A0 One reason to use 09 is for consis= tency; it's been used in our group a lot in the past.

My colleague said he observed some different results from 09 and 16= , though he didn't remember how large the differences were.=C2=A0=C2=A0=

I will likely do some of my own comparisons, but = I am curious, does anyone have experience with this?

The calculations I will be doing for my project are pretty mundane: usin= g RHF to optimize geometry, and using MP2 to calculate the energy and extra= ct charges with CHelpG.=C2=A0 The basis sets I will use are fairly pedestri= an -- 6-31G(d), cc-pVTZ, etc -- nothing particularly exotic.=C2=A0=C2=A0

From looking at this page (=C2=A0https://gaussian.com/gdiffs/=C2= =A0), it looks like Gaussian 16 mainly added new methods and basis sets.=C2= =A0 I can imagine that algorithm improvements/tweaks (faster, more effectiv= e parallelization, etc) could give rise to some numerical differences, but = I would not expect these differences to be terribly significant for most pr= operties.=C2=A0 Is this your experience?

Thanks fo= r your time,
Andrew

Andrew DeYoung, PhD<= /div>
Department of Chemistry
Carnegie Mellon University
--00000000000041c62205d957f3c3-- From owner-chemistry@ccl.net Thu Mar 3 19:31:00 2022 From: "Uche Anene uche(!)uconn.edu" To: CCL Subject: CCL:G: Gaussian 09 and 16 compared for mundane calculations Message-Id: <-54622-220303193017-15289-4rueGL44kDMmBcaj4lb2XA:server.ccl.net> X-Original-From: Uche Anene Content-Type: multipart/alternative; boundary="Apple-Mail=_B3AF1A9E-636E-4DC5-9C8C-A3F4CA42A4E4" Date: Thu, 3 Mar 2022 19:30:08 -0500 Mime-Version: 1.0 (Mac OS X Mail 14.0 \(3654.60.0.2.21\)) Sent to CCL by: Uche Anene [uche*uconn.edu] --Apple-Mail=_B3AF1A9E-636E-4DC5-9C8C-A3F4CA42A4E4 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=utf-8 Andrew, There=E2=80=99s no major difference between G09 and G16 that you can=E2=80= =99t adjust to make them the same. For example, the default settings for = convergence and SCF are higher in G16 but you can change them to be = consistent with G09. Here=E2=80=99s a list of the changes https://gaussian.com/gdiffs/ Happy computing, Uche=20 Uchenna A. Anene Ph.D. Candidate, Chemical Engineering =20 University of Connecticut Innovation Partnership Building=20 159 Discovery Drive, Unit# 5279 Storrs, CT 06269 Email: uche=uconn.edu Group Website: https://alpay.ims.uconn.edu/uche-anene/# = LinkedIn: www.linkedin.com/in/uche-anene = ResearchGate: https://www.researchgate.net/profile/Uchenna_Anene = =20 Twitter: https://twitter.com/ThatsSoUche = > On Mar 3, 2022, at 5:30 PM, Andrew DeYoung = andrewdaviddeyoung##gmail.com wrote: >=20 >=20 > *Message sent from a system outside of UConn.* >=20 >=20 > Hi, >=20 > My institution has both Gaussian 09 and Gaussian 16, and I'm trying to = decide which to use for my new project. (My background is in = applications of MD simulations, and I'm quite new to quantum chemistry.) = One reason to use 16 is that, well, it's the latest version. One = reason to use 09 is for consistency; it's been used in our group a lot = in the past. >=20 > My colleague said he observed some different results from 09 and 16, = though he didn't remember how large the differences were. =20 >=20 > I will likely do some of my own comparisons, but I am curious, does = anyone have experience with this? >=20 > The calculations I will be doing for my project are pretty mundane: = using RHF to optimize geometry, and using MP2 to calculate the energy = and extract charges with CHelpG. The basis sets I will use are fairly = pedestrian -- 6-31G(d), cc-pVTZ, etc -- nothing particularly exotic. =20 >=20 > =46rom looking at this page ( https://gaussian.com/gdiffs/ = ), it looks like Gaussian 16 mainly added = new methods and basis sets. I can imagine that algorithm = improvements/tweaks (faster, more effective parallelization, etc) could = give rise to some numerical differences, but I would not expect these = differences to be terribly significant for most properties. Is this = your experience? >=20 > Thanks for your time, > Andrew >=20 > Andrew DeYoung, PhD > Department of Chemistry > Carnegie Mellon University --Apple-Mail=_B3AF1A9E-636E-4DC5-9C8C-A3F4CA42A4E4 Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=utf-8 Andrew,

There=E2=80=99s no major difference between G09 and G16 that = you can=E2=80=99t adjust to make them the same. For example, the default = settings for convergence and SCF are higher in G16 but you can = change them to be consistent with = G09.
Here=E2=80=99s a list of the = changes

Happy computing,
Uche 



Uchenna A. = Anene
Ph.D. Candidate, Chemical = Engineering  
University of = Connecticut
Innovation Partnership = Building 
159 Discovery Drive, Unit# = 5279
Storrs, CT 06269





On Mar 3, 2022, at 5:30 PM, Andrew DeYoung = andrewdaviddeyoung##gmail.com = <owner-chemistry=ccl.net> wrote:


*Message sent from a system outside of UConn.*


Hi,

My institution has both Gaussian 09 and Gaussian = 16, and I'm trying to decide which to use for my new project.  (My = background is in applications of MD simulations, and I'm quite new to = quantum chemistry.)  One reason to use 16 is that, well, it's the latest version.  One reason to use 09 is for consistency; it's = been used in our group a lot in the past.

My colleague said he observed some different results = > from 09 and 16, though he didn't remember how large the differences = were.  

I will likely do some of my own comparisons, but I am = curious, does anyone have experience with this?

The calculations I will be doing for my project are = pretty mundane: using RHF to optimize geometry, and using MP2 to = calculate the energy and extract charges with CHelpG.  The basis = sets I will use are fairly pedestrian -- 6-31G(d), cc-pVTZ, etc -- = nothing particularly exotic.  

=46rom looking at this page ( https://gaussian.com/gdiffs/ ), it looks like = Gaussian 16 mainly added new methods and basis sets.  I can imagine = that algorithm improvements/tweaks (faster, more effective parallelization, etc) could give rise to some numerical differences, = but I would not expect these differences to be terribly significant for = most properties.  Is this your experience?

Thanks for your time,
Andrew

Andrew DeYoung, PhD
Department of Chemistry
Carnegie Mellon University

= --Apple-Mail=_B3AF1A9E-636E-4DC5-9C8C-A3F4CA42A4E4-- From owner-chemistry@ccl.net Thu Mar 3 21:42:00 2022 From: "Igors Mihailovs igorsm:-:cfi.lu.lv" To: CCL Subject: CCL:G: [CCL]Re: CCL:G: Gaussian 09 and 16 compared for mundane calculations Message-Id: <-54623-220303213937-30048-VBadhleaTo0ctPMeq7lnFQ\a/server.ccl.net> X-Original-From: Igors Mihailovs Content-Language: en-US Content-Type: multipart/alternative; boundary="------------dK4KxmeGqa4Elkyr0uB2ea0m" Date: Fri, 4 Mar 2022 04:39:28 +0200 MIME-Version: 1.0 Sent to CCL by: Igors Mihailovs [igorsm*|*cfi.lu.lv] This is a multi-part message in MIME format. --------------dK4KxmeGqa4Elkyr0uB2ea0m Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 8bit Hello Dr. DeYoung, Personally I have an overall impression that Gaussian 16 is a bit faster either because of algorithm improvements or maybe because it utilizes AVX2 CPU instructions available on our newer nodes. Although I have now checked and for small molecules Gaussian 09 at HF level somehow is consistently a bit faster for the second hyperpolarizability. In regards to difference in results. The main difference in defaults is the integration grid for DFT which is now UltraFine and not Fine like in Gaussian 09, as well as tighter two-electron integral accuracy. This can indeed cause some serious difference in results (UltraFine is much better). But if we compare HF with various basis sets, for small molecules second hyperpolarizability results were not different more than by 0.002 % for me. *_________* Yours sincerely, Igors Mihailovs Research assistant Laboratory of Organic Materials Institute of Solid State Physics University of Latvia www.cfi.lu.lv On 04.03.22 00:30, Andrew DeYoung andrewdaviddeyoung##gmail.com wrote: > Hi, > > My institution has both Gaussian 09 and Gaussian 16, and I'm trying to > decide which to use for my new project.  (My background is in > applications of MD simulations, and I'm quite new to quantum > chemistry.)  One reason to use 16 is that, well, it's the latest > version.  One reason to use 09 is for consistency; it's been used in > our group a lot in the past. > > My colleague said he observed some different results from 09 and 16, > though he didn't remember how large the differences were. > > I will likely do some of my own comparisons, but I am curious, does > anyone have experience with this? > > The calculations I will be doing for my project are pretty mundane: > using RHF to optimize geometry, and using MP2 to calculate the energy > and extract charges with CHelpG.  The basis sets I will use are fairly > pedestrian -- 6-31G(d), cc-pVTZ, etc -- nothing particularly exotic. > > From looking at this page ( https://gaussian.com/gdiffs/ ), it looks > like Gaussian 16 mainly added new methods and basis sets.  I can > imagine that algorithm improvements/tweaks (faster, more effective > parallelization, etc) could give rise to some numerical differences, > but I would not expect these differences to be terribly significant > for most properties. Is this your experience? > > Thanks for your time, > Andrew > > Andrew DeYoung, PhD > Department of Chemistry > Carnegie Mellon University --------------dK4KxmeGqa4Elkyr0uB2ea0m Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 8bit Hello Dr. DeYoung,

Personally I have an overall impression that Gaussian 16 is a bit faster either because of algorithm improvements or maybe because it utilizes AVX2 CPU instructions available on our newer nodes. Although I have now checked and for small molecules Gaussian 09 at HF level somehow is consistently a bit faster for the second hyperpolarizability.

In regards to difference in results. The main difference in defaults is the integration grid for DFT which is now UltraFine and not Fine like in Gaussian 09, as well as tighter two-electron integral accuracy. This can indeed cause some serious difference in results (UltraFine is much better). But if we compare HF with various basis sets, for small molecules second hyperpolarizability results were not different more than by 0.002 % for me.
_________

Yours sincerely,
Igors Mihailovs
Research assistant
Laboratory of Organic Materials
Institute of Solid State Physics
University of Latvia

On 04.03.22 00:30, Andrew DeYoung andrewdaviddeyoung##gmail.com wrote:
Hi,

My institution has both Gaussian 09 and Gaussian 16, and I'm trying to decide which to use for my new project.  (My background is in applications of MD simulations, and I'm quite new to quantum chemistry.)  One reason to use 16 is that, well, it's the latest version.  One reason to use 09 is for consistency; it's been used in our group a lot in the past.

My colleague said he observed some different results from 09 and 16, though he didn't remember how large the differences were.  

I will likely do some of my own comparisons, but I am curious, does anyone have experience with this?

The calculations I will be doing for my project are pretty mundane: using RHF to optimize geometry, and using MP2 to calculate the energy and extract charges with CHelpG.  The basis sets I will use are fairly pedestrian -- 6-31G(d), cc-pVTZ, etc -- nothing particularly exotic.  

From looking at this page ( https://gaussian.com/gdiffs/ ), it looks like Gaussian 16 mainly added new methods and basis sets.  I can imagine that algorithm improvements/tweaks (faster, more effective parallelization, etc) could give rise to some numerical differences, but I would not expect these differences to be terribly significant for most properties.  Is this your experience?

Thanks for your time,
Andrew

Andrew DeYoung, PhD
Department of Chemistry
Carnegie Mellon University

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