From harry@ccl.net  Mon Nov 29 02:51:31 1993
Received: from wrzx01.rz.uni-wuerzburg.de  for harry@ccl.net
	by www.ccl.net (8.6.4/930601.1506) id CAA14079; Mon, 29 Nov 1993 02:37:52 -0500
Received: from wpcs01.phys-chemie.uni-wuerzburg.dbp.de (wpcx11.phys-chemie.uni-wuerzburg.de) by wrzx01.rz.uni-wuerzburg.de (4.1/uniwue-M-3.1)
	id AA12273; Mon, 29 Nov 93 08:37:42 +0100
Received: by wpcs01.phys-chemie.uni-wuerzburg.dbp.de (4.1/uniwue-C-1.7)
	id AA19267; Mon, 29 Nov 93 08:37:41 +0100
Date: Mon, 29 Nov 93 08:37:41 +0100
From: Harald Lanig <harry@phys-chemie.uni-wuerzburg.dbp.de>
Message-Id: <9311290737.AA19267@wpcs01.phys-chemie.uni-wuerzburg.dbp.de>
To: chemistry@ccl.net
Subject: domain error on IBM-PC


Dear netters!

I tried to compile react2 by Mike Whitbeck, a program to simulate
chemical reaction kinetics on a 486DX33 using Borland C 2.0
The package is available on our kekule-server.
The compilation is done, but the program runs into a floating-point
domain error. A sample program to test the lsoda integrator (also in
the package) fails with the same error.
I think the problem has todo with machine dependent precision in variable-type
specification. Has anyone out there solved this problem? 
Possibly someone is using the lsoda routines on a IBM PC. (React2 runs
perfectly on a SUN Sparc 2!) Perhaps, DOS executables are alrady available?

Thanks in advance for any help or comment!

-Harry


---------------------------------------------------------------
Harald Lanig                 Institut fuer Physikalische Chemie
                             Marcusstr. 9-11
phone: +49(0)931-31-510      97070 Wuerzburg
  fax: +49(0)931-57-849      Germany
email: harry@phys-chemie.uni-wuerzburg.de
---------------------------------------------------------------



From NMUELLER@EDVZ.UNI-LINZ.AC.AT  Mon Nov 29 06:51:38 1993
Received: from ALIJKU11.EDVZ.Uni-Linz.AC.AT  for NMUELLER@EDVZ.UNI-LINZ.AC.AT
	by www.ccl.net (8.6.4/930601.1506) id GAA15026; Mon, 29 Nov 1993 06:29:11 -0500
Message-Id: <199311291129.GAA15026@www.ccl.net>
Received: from [140.78.98.5] by ALIJKU11.EDVZ.Uni-Linz.AC.AT (IBM VM SMTP V2R2)
   with TCP; Mon, 29 Nov 93 12:29:00 CET
X-Sender: K360171@ALIJKU11.EDVZ.UNI-LINZ.AC.AT
Mime-Version: 1.0
Content-Type: text/plain; charset="us-ascii"
Date: Mon, 29 Nov 1993 12:29:08 +0100
To: chemistry@ccl.net
From: NMUELLER@EDVZ.UNI-LINZ.AC.AT (Norbert Mueller)
Subject: Summary: HyperChem (SGI) replacements


Approximately 3 weeks ago I posted a question about possible replacements
for similarily priced HyperChem on the SGI platform for use in a teaching
lab. This has become necessary for us as AutoDesk has no (ooficial) plans
for upgrading HyperChem 2.0 for SGI on that platform.

Here comes the promised summary of responses:
Square brackets [] indicate comments inserted by myself.

Dear Sir,

  I think that AMPAC 4.5 might be a good choice.  It does not do
Molecular Mechanics, but is an excellent semiempirical package.
The graphical user interface is easy and intuitive, based on frag-
mentary construction.  I'll be happy to forward a brochure and
other information if you would like.

   Andy Holder

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
                              DR. ANDREW HOLDER
             Assistant Professor of Computational/Organic Chemistry

Department of Chemistry              ||  BITNET Addr:   AHOLDER@UMKCVAX1
University of Missouri - Kansas City ||  Internet Addr: aholder@vax1.umkc.edu
Spencer Chemistry, Room 315          ||  Phone Number:  (816) 235-2293
Kansas City, Missouri 64110          ||  FAX Number:    (816) 235-1717
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

We are currently using SYBYL from Tripos Associates in the teaching role
that you described in your message.  There are various options available
for this package which make it quite flexible for use both in and out of
the classroom.  In our case, SYBYL is currently installed on an IRIS INDIGOII
system which is then linked to lecture stations and student workstations
using both the NITRO terminal package (Mac II and PC)and the XDEV X11 interface.
Our favorable experience with this arrangement has stimulated our administration
into funding a broader acquisition of SYBYL for use on our entire campus
network of over 600 RS/6000 and Sun Sparc student workstations.

While SYBYL is somewhat more expensive than Hyperchem, Tripos offers quite
attractive academic pricing.

        Curt Breneman
        Asst. Professor of Chemistry
        Rensselaer Polytechnic Institute
        Troy, NY 12180.
        breneman@xray.chem.rpi.edu

_______________________________________________________________________
I suggest that you look into Sybyl. It does quite well with interfaces
to standard QCPE programs and visualization. I have no clue as to the pricing
structure.

Yvonne Martin
Abbott Laboratories
_______________________________________________________________________
While I don't know the price or HC for the SGI, the academic price
for Spartan (single copy) is $1500 US plus shipping - there are smaller
costs for additional copies up to a site license for, I think, $5000 US
plus shipping (single tape for all SGI).  We're finishing up a pure-X
version that will support Macs and PCs using 8-bit color X-servers (with
ethernet/TCP).

We have various modules (QM, MM, graphics, etc), and connect to G92 (V3.0)
and Allinger's MM3 (V3.1).  If you want, I'll have somebody send you
additional information (or I'll try to answer what questions you might
raise).

Joe Leonard
jle@world.std.com

________________________________________________________________________
From: Jeffrey J Gosper <Jeffrey.Gosper@brunel.ac.uk>

We use ChemX (by Chemical design Limited) for this purpose.

________________________________________________________________________

From: km%biosym.uucp@Germany.EU.net


[Insight Express (Biosym) is suggested by Klaus May, original mail was in
German]
________________________________________________________________________

For the problems you describe (molecular mecahnics and semi-empirical) I
suggest Spartan.  It has a good graphics front end, gives good choice
of surfaces (HOMO's, LUMO's, esp, etc), and can also do ab initio studies.
It is weak on the biomolecules.  Although they pormise to improve that,
HC has more options there.  I also like the user interface on Spartan better.

LabVision from Tripos does a reasonable job with biomolecules, but you
are pretty much limited to the SYBYL force field.  I do not like the
user interface there as well either.

Phil Bays
Saint Mary's College
Notre Dame    IN  46556
pbays@saintmarys.edu
bays@indigo.saintmarys.edu

________________________________________________________________________
 From: fagerbur@Kodak.COM
Herr Dr. Mueller!
   I am sure you will get several responses like mine for Hyperchem replacement
on the SGI.  The program we have that runs very well is SPARTAN from Warren
Hehre at Wavefunction in Irvine Calif.  The graphical interface is really well
done and the builder "knows" lots of organic chemistry.  We have found it easy
to use.  It was also inexpensive - I think it is $1500 for academics.


Note: the above is the personal opinion of the author and not that of Eastman
Chemical Company.
________________________________________________________________________
 From: shenkin@still3.chem.columbia.edu (Peter Shenkin)
I don't know what Hyperchem used to cost for SGI, but here is the
blurb on MacroModel:


==========================================================================

                INTRODUCTION TO MACROMODEL 4.0
                        Sep 20 1993
        [[ You may obtain this document remotely by means of
            "finger mmod@still3.chem.columbia.edu". ]]

________________________________________________________________________

Norbert-
An excellent choice for a replacement for Hyperchem on the SGI
platform would be MacroModel, written by Clark Still at Columbia
University.  The porgram is available for Academics for the low
cost of $750.  For information on ordering, constact Joan HOrgan at
212-854-2577 or e-mail sl1joan@cuchmc.chem.columbia.edu.

The program supports MM2, MM#, AMBER and OPLS force fields; Metropolis\
MOte Carlo structure searching and has a very nice graphical
user interface.

Rachelle Bienstock (rachelle@picard.niehs.nih.gov)
________________________________________________________________________
 From: "CBAS25 ::P_BLADON ::CBAS25" <CBAS25@VAXE.STRATHCLYDE.AC.UK>
Dear Dr. Mueller,
        I have seen your recent posting on the network regarding the
demise of Hyperchem.  I can offer you the package INTERCHEM which
might file you needs.  I have sent a brief description of the program(s)
in a second mail message.  I can send you a more detailed description if
you are interested.  The package is available either through QCPE or from
me direct for the price of $400 (US) or the equivalent in other currencies.
This is for a site license.  Because the package is distributed as source
code, you would neeed to have available (on one machine at least) Fortran
and C compilers.

Yours sincerely

Peter Bladon

________________________________________________________________________

The program you should get is SPARTAN:
Wavefunction Inc.
18401 Von Karman
Suite 370
Irvine, CA 92715
USA
(714)955-2120,  FAX (714)955-2118
or  jle@world.std.com  (Joe Lennard)
  SPARTAN is an INTEGRATED MMX, semiemp, AND ab initio package with excellent
graphics.
elewars@trentu.ca   Errol Lewars  Chem Dept  Trent Uni
                    Peterborough  Ontario  Canada  K9J 7B8
=============================================
_______________________________________________________________________

I have recently purchased a SGI Iris Indigo 4000, with Entry graphics,
and am running a superb computational package on it.  The program is
far more powerful than HC, and it's considerably easier to use.

The software is Spartan, version 3.0, available from
            Wavefunction, Inc.
            18401 Von Karman, Suite 370
            Irvine, CA  92715   USA
            Phone (714) 955-2120

Academic pricing of the program is $1500 (US), so it's probably more
expensive than HyperChem, but it is well worth the money.  Spartan
can perform MM calculations using MM2, MM3, and SYBYL force fields;
Semiempirical calculations using MNDO, AM1, and PM3.  It can also do some
CI.  SPARTAN also can do ab initio calculations.  It has STO-3g, 3-21G,
6-31G, and 6-311G basis sets, as well as heavy atom polarization
functions (*).  You could also input your own basis set functions.

SPARTAN can calculate UV spectra.  It can also calculate the normal
vibrational modes of a molecule, and display each one, animated!
This should be especially useful in teaching IR spectroscopy.  I
calculated the vibrational modes of phenol in less than five
minutes.  This included building the molecule, performing the
semiempirical calculation, and calculating all of the vibrations.

Spartan can also calculate transition-state geometries and the energies of
those states.  This is my particular interest, but I haven't found the time
to perform one of those calculations; it's a very busy semester.

The program is very easy to use.  I'd guess students would be performing
rather high-level calculations within thirty minutes.  They'll be able to
build molecules within five minutes.

It has a superb graphically-based interface, which builds molecules and
performs some preliminary geometry optimization.  It produces genuine
three-dimensional plots of MOs. electron density, spin density, etc.,
and will display one of those properties mapped on another.


I have been very pleased with SPARTAN, and with the service Wavefunction
has given.  They are a very professional, personable company.

I hope this has been useful to you.  By the way, in spite of the
tone of this message, I have no financial stake in SPARTAN; I'm just
an enthusiastic fan of the package.


                Regards,

                Francis M. Klein
                Creighton University
                Omaha, NE, 68178  USA
                fklein@creighton.edu

_______________________________________________________________________

Check out SPARTAN, from Wavefunction, Inc., 18401 Von Karman Avenue,
Suite 370, Irvine, CA 92715. Telephone: (714)955-2120. The software is as
easy to use as HyperChem and more versatile. They supply a several
hundred page manual of experiments for undergraduates in organic
chemistry using Spartan.

Susan C. Jackels
Department of Chemistry
Wake Forest University
Winston-Salem, NC  27109
Phone: (919)759-5514     FAX: (919)759-4656
Internet: sjackels@ac.wfunet.wfu.edu

On sabbatical for 1993-1994 at:
Department of Medicinal Chemistry
308 Harvard Street S.E.
University of Minnesota
Minneapolis, MN 55455
Phone: (612)626-4429

_______________________________________________________________________
_______________________________________________________________________

[FRom what I have read here I will gather furtehr info on Spartan and
MacroModel. InterChem sounds very good price/performance wise but its
requirement of a 24-bit z-buffer eliminates our entry level graphics
machines]


--
Norbert Mueller
Institut fuer Chemie, Johannes Kepler Universitaet
A-4040 Linz, Austria

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> IMPORTANT NOTICE <<<<<<<<<<<<<<<<<<<<<<<<<<
Superior powers have decided to change our e-mail addresses again.
So please take note that some time between now and March 1994 my e-mail
address changes to 

                NMUELLER@JKU.UNI-LINZ.AC.AT

Sorry for any inconvenience and delays this may cause.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> IMPORTANT NOTICE <<<<<<<<<<<<<<<<<<<<<<<<<<

e-mail: NMUELLER@edvz.uni-linz.ac.at  -  expires in 1994
        NMUELLER@jk.uni-linz.ac.at    -  use starting 1994 (preferred)
        Norbert@soft.uni-linz.ac.at     
        NorbertM,ALLinz               -  AmdaLink 
        NorbertM@AMDA.UNI-LINZ.AC.AT  -  FirstClass AmdaLink Internet
Gateway



From sauer@organik.uni-erlangen.de  Mon Nov 29 07:51:39 1993
Received: from faui45.informatik.uni-erlangen.de  for sauer@organik.uni-erlangen.de
	by www.ccl.net (8.6.4/930601.1506) id GAA15122; Mon, 29 Nov 1993 06:54:17 -0500
Received: from derioc1.organik.uni-erlangen.de by uni-erlangen.de with SMTP;
	id AA16968 (5.65c-6/7.3v-FAU); Mon, 29 Nov 1993 12:53:59 +0100
Received: by organik.uni-erlangen.de;
	id AA10076 (5.64/7.3n-FAU); Mon, 29 Nov 93 12:53:41 +0100
From: Wolfgang Sauer <sauer@organik.uni-erlangen.de>
Message-Id: <9311291153.AA10076@derioc1.organik.uni-erlangen.de>
Subject: FELIX + JEOL ?
To: CHEMISTRY@ccl.net (CompChem MailExploder)
Date: Mon, 29 Nov 93 12:53:39 MET
X-Mailer: ELM [version 2.3 PL11]



Dear netters,

I'd like to get in touch with people using FELIX on data produced on 
JEOL hardware (esp. 2D {3D ?}), as this does not seem to be trivial.
Any hints, tricks, recommendations ???

Thanks in advance.
Wolfgang Sauer
-- 
+============================================================================+
!      Please note the change of all German postcodes since 1 July 1993      !
+======================================+=====================================+
|  Wolfgang Sauer                      |                                     |
|  Institut fuer Organische Chemie I   |  "You have to be three standard     |
|  Henkestr. 42, D-91054 Erlangen, FRG |   deviations away from a normal     |
|                                      |       personality to like UNIX."    |
|  sauer@organik.uni-erlangen.de       |                                     |
|  Tel.: 49/0 - 9131 - 85 - 2952       |              Morris Jones (C&T)     |
|  Fax:                   - 9132       |                                     |
+======================================+=====================================+

From BOYD_DONALD_B@Lilly.com  Mon Nov 29 10:52:52 1993
Received: from Lilly.com  for BOYD_DONALD_B@Lilly.com
	by www.ccl.net (8.6.4/930601.1506) id KAA16726; Mon, 29 Nov 1993 10:06:42 -0500
From: <BOYD_DONALD_B@Lilly.com>
Received: from DECNET-MAIL (QSAR@MCVAX0) by INET.D48.LILLY.COM (PMDF V4.2-13
 #2311) id <01H5VTUG76RK0000XX@INET.D48.LILLY.COM>; Mon,
 29 Nov 1993 10:06:07 EST
Date: Mon, 29 Nov 1993 10:06:07 -0500 (EST)
Subject: * book announcement *
To: chemistry@ccl.net
Message-id: <01H5VTUG7Q1U0000XX@INET.D48.LILLY.COM>
X-VMS-To: INT::"chemistry@ccl.net"
X-VMS-Cc: ME
MIME-version: 1.0
Content-transfer-encoding: 7BIT


    A new volume in the book series REVIEWS IN COMPUTATIONAL CHEMISTRY
has just been published.  Volume V features 458 pages of tutorials and
reviews on the following topics: 

The Development of Computational Chemistry in the United States
	John D. Bolcer and Robert B. Hermann
Applications of Post-Hartree-Fock Methods: A Tutorial
	Rodney J. Bartlett and John F. Stanton
Population Analysis and Electron Densities from Quantum Mechanics
	Steven M. Bachrach
Biological Applications of Electrostatic Calculations and Brownian
	Dynamics Simulations 
	Jeffry D. Madura, Malcolm E. Davis, Michael K. Gilson, 
	Rebecca C. Wade, Brock A. Luty, and J. Andrew McCammon
Computer Simulation of Lipid Systems
	K. V. Damodaran and Kenneth M. Merz Jr.
Distance Geometry in Molecular Modeling
	Jeffrey M. Blaney and J. Scott Dixon
A Perspective of Modern Methods in Computer-Aided Drug Design
	Lisa M. Balbes, S. Wayne Mascarella, and Donald B. Boyd
Compendium of Software
	Donald B. Boyd

Balancing academic and industrial interests, REVIEWS IN COMPUTATIONAL
CHEMISTRY features definitive treatments of the latest advances in
computational methods for chemists and scientists in allied fields.  A
valuable resource for novices and practitioners alike, many of the
chapters are written as tutorials aimed at the level of first- or 
second-year graduate students. 

All aspects of computer-aided chemistry are within the scope of the
series, including molecular modeling, molecular mechanics and dynamics,
quantum chemistry, computer-assisted molecular design, quantitative
structure-activity relationships, and structural databases.  Included in
each volume is a continually updated, comprehensive software compendium
which serves as a valuable source guide.  Listed are hundreds of
programs, services, suppliers, and other helpful information. 

Kenny Lipkowitz and Donald B. Boyd, Co-Editors.

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
Information about Volume V (ISBN 1-56081-658-9) can be obtained from 
VCH Publishers, 303 NW 12th Avenue, Deerfield Beach, FL 33442, tel.
800-367-8249, fax: 1-800-367-8247.  In Europe, contact VCH, POB 101161,
69451 Weinheim, Germany, tel. 49-6201-6060, fax: 49-6201-606328.  Price
is $110, but with a standing order for the series, it is reduced to $90.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-

From: BOYD DONALD B                 (MCVAX0::QSAR)

To:   VMS MAIL ADDRESSEE            (INT::"chemistry@ccl.net")
cc:   BOYD DONALD B                 (MCVAX0::QSAR)

From ackerman@theochem.tu-muenchen.de  Mon Nov 29 10:54:48 1993
Received: from theo1.theochem.tu-muenchen.de  for ackerman@theochem.tu-muenchen.de
	by www.ccl.net (8.6.4/930601.1506) id KAA17085; Mon, 29 Nov 1993 10:48:33 -0500
Received: from theo80.theochem.tu-muenchen.de by theo1.theochem.tu-muenchen.de (5.64/1.34)
	id AA00542; Mon, 29 Nov 93 16:03:37 +0100
Received: by theo80.theochem.tu-muenchen.de (4.1/SMI-4.1)
	id AA00283; Mon, 29 Nov 93 16:03:35 +0100
Date: Mon, 29 Nov 93 16:03:35 +0100
From: ackerman@theochem.tu-muenchen.de (Lutz Ackermann)
Message-Id: <9311291503.AA00283@theo80.theochem.tu-muenchen.de>
To: chemistry@ccl.net
Subject: Summary: Comp Chem Course


Dear netters,

About two weeks ago I asked for suggestions concerning textbooks and
other educational material for a Comp. Chem. course. Here is a short
summary of quotations from various responses so far (thanks a lot ye'all!):

--------------------------------------------------------------------------------

-> A list of books has been on CCL on August 18 this year (I won't repeat that)

-> "Reviews in Computational Chemistry Vol 4" eds Boyd & Lipkowitz
   VCH, 1993.  Chapter 4 was written by professors from 3 different Universities
   on their experiences teaching comp chem to undergraduates. There are 
   also more references at the end of the chapter.

-> Even if you don't have GAUSSIAN for Windows the textbook that
   comes with it is sold separately and is pretty good.
   Foresman and Frisch Exploring Chemistry etc isbn 0-9636769-0-3
   20 dollars (?) or so direct from GAUSSIAN Inc


-> You might look at Chapter 15 of Levine's Quantum Chemistry text (4th ed).
   He has revised the material and it has some useful material.  I also
   has some stuff that Warren Hehre presented at an ACS short course that
   evaluates the performance of various ab initio, semi-emiprical, and
   mechanics methods.  Much of it I believe has been published under his
   name, which narrows a literature search considerably.  I will be using
   these materials for the last three weeks of my Quantum Chemistry
   course, as I do not have a full semester to teach the material.


-> We are also planning to introduce at least one experiment on the
   applications of Artificial Intelligence to Chemistry. If you
   are interested in this area, the text we shall use as a
   reference is a straightforward and short undergraduate text called
   "Applications of Artificial Intelligence in Chemistry". This
   text is part of the 'Oxford Chemistry Primers' series, published
   by Oxford University Press. I am the author (Dr Hugh Cartwright, Physical 
   Chemistry Laboratory, Oxford University, UK) and the ISBN
   number is ISBN 0-19-855736-1; it should be published in about
   4 weeks, and cost about 12-15DM (5 pounds UK). It is very much
   an introductory text, assuming no knowledge of AI (and almost
   no knowledge of computing as well!) It was written for scientific
   undergraduates in general, not just chemists.


-> One book I have found useful, at the undergraduate level, is:
                     _Molecular Dynamics Simulation  Elementary Methods_
                  by: J.M. Haile
             Published by: Wiley Interscience
                 ISBN number:0-471-81966-2

--------------------------------------------------------------------------------

I have not yet evaluated all af the references cited above, so I will not
make any comment on those. It seems to me, that quite a lot of people are
interested in this subject (please, excuse me, that I did not answer 
individually, but I assume that this summary will be helpful, too).
I would encourage, that those, who have worked with textbooks or other
materials apt for teaching computational chemistry give reviews of those
via CCL-mail. Thanks a lot, once again!

L. Ackermann


                          *****************************************************
                          *                                                   *
                          * Dr. Lutz Ackermann                                *
                          *                                                   *
                          * Lehrstuhl fuer Theoretische Chemie (TU Munich)    *
                          * Lichtenbergstr. 4                                 *
                          * 85747 Garching                                    *
                          * Germany                                           *
                          *                                                   *
                          * room Nr. 63103                                    *
                          * Tel.     (+49 +89) 3209 3602                      *
                          * Fax      (+49 +89) 3209 3622                      *
                          * e-mail   ackerman@theo1.theochem.tu-muenchen.de   *
                          *                                                   *
                          *****************************************************



From CHAMANKHAH@sask.usask.ca  Mon Nov 29 14:51:44 1993
Received: from skycat.usask.ca  for CHAMANKHAH@sask.usask.ca
	by www.ccl.net (8.6.4/930601.1506) id OAA19115; Mon, 29 Nov 1993 14:20:06 -0500
From: <CHAMANKHAH@sask.usask.ca>
Received: from SKYCAT.USask.CA by SKYCAT.USask.CA (PMDF V4.2-14 #3676) id
 <01H5W0I7ZQ688WWVCS@SKYCAT.USask.CA>; Mon, 29 Nov 1993 13:19:05 CST
Date: Mon, 29 Nov 1993 13:19:05 -0600 (CST)
Subject: Program for Elemental Composition
To: CHEMISTRY@ccl.net
Message-id: <01H5W0I85MCY8WWVCS@SKYCAT.USask.CA>
X-Envelope-to: CHEMISTRY@ccl.net
X-VMS-To: IN::"CHEMISTRY@ccl.net"
MIME-version: 1.0
Content-transfer-encoding: 7BIT



Hi Netters

Does anybody know if there is a computer program capable of calculating the
elemental composition of a compound knowing the exact mass by high resolution
mass spectrometry? Thus the input is exact mass (high resolution) and the 
expected output will be the general molecular formula or elemental composition
of the compound.


Thanks for your help.

M.Chamankhah
College of Pharmacy
University of Saskatchewan
Saskatoon, Canada

From pbays@saintmarys.edu  Mon Nov 29 15:52:43 1993
Received: from jade.saintmarys.edu  for pbays@saintmarys.edu
	by www.ccl.net (8.6.4/930601.1506) id PAA19524; Mon, 29 Nov 1993 15:19:00 -0500
Received: by jade.saintmarys.edu
	(1.37.109.8/16.2) id AA11079; Mon, 29 Nov 1993 15:21:52 -0500
Date: Mon, 29 Nov 1993 15:19:44 -0500 (EST)
From: Phil Bays <pbays@saintmarys.edu>
Subject: Comp. Chem. Seats
To: CHEMISTRY@ccl.net
Message-Id: <Pine.3.87.9311291544.A10525-0100000@jade.saintmarys.edu>
Mime-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII



 I have funding for setting up a computational chemistry lab here at Saint 
 Mary's College.  This will be used by undergraduate students.  The 
 college size is 1500 students, with about 50 taking organic, and 5-10 
 taking physical chemistry.   I give that background because it is 
 important for the following questions:
 
 What has been your experience in setting up such a lab in terms of the 
 ratio of students to workstation?   I can buy 5 IndyPC's, 4 Indy SC's or 
 2 Indigo^2's.  I will be running Spartan and Labvision, possibly 
 MacroModel and Gaussian.    SGI sales people tell me to forget the 
 IndyPC, and go at least to the IndySC.  On the other hand, they also tell 
 me that the Indigo^2 is the only one that has future expandability and 
 upgradability.   My own observation is that SGI pricing is such that 
 upgrading is frequently the same price as a new machine.
 
 Any advice??
 
 Phil Bays
 Saint Mary's College
 Notre Dame   IN  46556
 pbays@saintmarys.edu 

 




From CHM001@marshall.wvnet.edu  Mon Nov 29 20:51:43 1993
Received: from muvms3.mu.wvnet.edu  for CHM001@marshall.wvnet.edu
	by www.ccl.net (8.6.4/930601.1506) id UAA21861; Mon, 29 Nov 1993 20:38:31 -0500
Received: from marshall.wvnet.edu by marshall.wvnet.edu (PMDF #2995 ) id
 <01H5WG048FZK9AMJK6@marshall.wvnet.edu>; Mon, 29 Nov 1993 20:39:15 EST
Date: 29 Nov 1993 20:39:15 -0500 (EST)
From: "DR. LAWRENCE R. SCHMITZ" <CHM001@marshall.wvnet.edu>
Subject: Cray Time - Dollar value
To: chemistry@ccl.net
Message-id: <01H5WG048FZM9AMJK6@marshall.wvnet.edu>
X-VMS-To: _IN%"chemistry@ccl.net"
MIME-version: 1.0
Content-type: TEXT/PLAIN; CHARSET=US-ASCII
Content-transfer-encoding: 7BIT


    I recently received a small grant of Cray C90 time at the
Pittsburgh Supercomputing Center.  The University propaganda
machine requires that I estimate the dollar value of the grant.
Therefore, I would very much appreciate it if those of you that
are familiar with commercial rates for Cray C90 time could
enlighten me.  The grant is given in units of Service Units.
A service unit is define as:

                SU = 0.75*CPU+1/64*MemInt+0.01*Con

where           CPU = CPU hours

                MemInt = a memory integral, in megaword hours.
                The memory integral is calculated by adding
                increments based on changes in the amount of
                memory your program is using: increment = memory
                size * (total time when program was connected to
                at least one CPU since last memory size change)

                Con = connect time hours

For the way I use the Cray, the charges will be almost entirely
based on CPU time.  (For an hour of cpu time, I will use about
12 MB (1.5 megawords) of RAM and perhaps a half hour of connect
time.)  Therefore, a service unit is about 1.3 hours of CPU time.
My question then is:

If you were going to buy about 100 hours of CPU time on a C90,
how much would you expect to pay per hour?

Thanks for any help you can offer!

Sincerely,   Larry Schmitz

PS   In April or May of 92 I asked a similar question about
time on a Cray Y-MP/832.  The rates I was quoted varied widely.
I finally decided that about $600/hour was a fair market value
at that time.  The C90 is faster than the Y-MP/832 but I suspect
that rates have declined.

