From gondet@idris.fr  Thu Oct 20 04:21:30 1994
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From: gondet@idris.fr (Gondet Etienne)
Message-Id: <9410200809.AA49199@sailor.idris.fr>
To: schinke@mlubio4.biochemtech.uni-halle.de
Cc: chemistry@ccl.net
Subject: Re: CCL:Parallel versions of comp. software 
Date: Thu, 20 Oct 94 09:09:29 +0100



> Dear CCL-members,
> our computational center at the university plans to buy new hardware
> (parallel systems). It want to know from the important users (like
> us - the comp. chem. group) what we require for hard- and especially
> for software. 
> So I have the following question(s):
> 1. What would you prefer as parallel-hardware for computational questions
>    (some workstation as cluster, shared memory systems, distributed
>    memory systems, how many processors). We do peptide and protein
>    modelling with force field methods.
> 2. Are there any parallelized versions of the following programs
>    available: Gromos, Amber (I know one), MM2P/MM3, Yeti, Mopac, Gamess,
>    Turbomole.
> 3. What hard- and software requirements does this versions need?
> 
> 
> Please send answers to schinke@mlubio4.biochemtech.uni-halle.de
> I will compile a list for the net, if there are answers.
> 
> Thank you for the help,
> 
> H. Schinke
> 


	Dear Mr SCHINKE,



	Recently you submit this request on CCL list, did you compile a 
list of answer and can you send me it.

	I am part of IDRIS/CNRS (national center for research)who have projects on
parallel and I will be interesting in all informations you can give me especially if
you know web or ftp adress for parallel benchmark on Gromos, Amber, Mopac, Gamess, etc
... and all software parallellized in Molecular Dynamics and Quantum Chemistry.



		Thank you, very much.

					Etienne GONDET
/-------------------------------------------------------------\
|      Assistance IDRIS       |       Etienne GONDET          |
|-----------------------------|-------------------------------|
|  Email : assist@idris.fr    | E-mail : gondet@idris.fr      |
|  Tel    : 33.1.69.82.42.00  |          ssos754@idris.fr     |
|  Fax    : 33.1.69.28.52.73  |                               |
|                             | Tel    : (1).69.82.42.55      |
|  CNRS-IDRIS                 |                               |
|  Batiment 506, BP 167       | Bureau 246                    |
|  91403 Orsay Cedex          |                               |
\-------------------------------------------------------------/


From sanja@indigo.irb.hr  Thu Oct 20 05:21:32 1994
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From: <sanja@indigo.irb.hr>
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Date: Thu, 20 Oct 94 09:31:36 +0200
Message-Id: <9410200731.AA10173@indigo.irb.hr>
To: CHEMISTRY@ccl.net
Subject: NBO manual



Dear netters,

   can somebody point me where I can found NBO manual (if such exist).
I have a lot of papers written by P. Schleyer, A.E.Reed et. al.
on that subject but I didn't found reference for the manual of 
the program which is now incorporated in Gaussian 92.
Thanx for your help


     Sanja



~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   Sanja Sekusak                                                      
   Rudjer Boskovic Institute           Phone:  (385-41) 46 10 89      
   P.O.B. 1016                         Fax:    (385-41) 27 26 48
   Zagreb, Croatia                     E-mail: sanja@indigo.irb.hr

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


From galvao@ifi.unicamp.br  Thu Oct 20 11:21:35 1994
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Date: Thu, 20 Oct 94 12:57:16 BDB
From: galvao@ifi.unicamp.br (Douglas Soares Galvao - prof)
Message-Id: <9410201457.AA04530@ifi.unicamp.br>
To: chemistry@ccl.net
Subject: Spartan program



Dear Netters

I am interested in the SPARTAN program. I would like to know the address of
the company is selling it.

Thanks in advance for your help.

Douglas Galvao


From Patrick.Bultinck@rug.ac.be  Thu Oct 20 11:34:26 1994
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Date: Thu, 20 Oct 1994 15:49:00 +0100 (MET)
From: Patrick Bultinck <Patrick.Bultinck@rug.ac.be>
Subject: AIMP's and Sets for Mg-Ba
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Dear Netters,

I have been looking up some effective core potentials and ab initio model 
potentials for alkaline-earth metal atoms and ions.

Does anybody have any suggestions which to use ?

I am very interested in Relativistic AIMP's like the ones of Barandiaran 
and Seijo (Can. J. Chem. Vol. 70 (1992) 409). Has anybody got experience 
with these AIMP's ? I saw only a few tables from this article, and would 
VERY much like to have the exponents, coeffs. etc, however I was told 
they are not in the article ! Can anybody point me to them ? (or give me 
the E-mails of Barandiaran or Seijo at the Univ. Autonoma de Madrid)

Second, does anybody have info on basissets for *all* Alkaline earth atoms ?
I know MINI and MIDI exist for all, but would certainly need more 
extended sets ! (there are sets mentionned in Barandarian et al., but 
without the tables !) Does anybody have info on polarization and diffuse 
gaussian exponents for these atoms ? (or do I best make my own sets ?)

I have looked up tons of articles, so this message is not sent out of
laziness !

Thank you very much,

Patrick, University of Ghent

From eslone@mason1.gmu.edu  Thu Oct 20 12:21:46 1994
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Subject: Re: Author of UNIFAC
To: Dag.Morten.Jahr@si.sintef.no (Dag Morten Jahr)
Date: Thu, 20 Oct 1994 11:59:05 -0400 (EDT)
From: "J. Eric Slone" <eslone@mason1.gmu.edu>
Cc: chemistry@ccl.net
In-Reply-To: <9410200825.AAdavy09251@davy.uio.no> from "Dag Morten Jahr" at Oct 20, 94 09:25:15 am
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I've had several people write to me that they could not get the program
I uploaded to the archives, UNIFAC to work correctly.  The file that
seems to get things working is GRID.VBX, so I have uploaded the latest
version of this file to the archives.  It is currently in /incoming.

Eric


From underhil@hp.rmc.ca  Thu Oct 20 12:43:08 1994
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	by www.ccl.net (8.6.9/930601.1506) id LAA08332; Thu, 20 Oct 1994 11:53:37 -0400
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To: chemistry@ccl.net
From: underhil@hp.rmc.ca (Ross Underhill)
Subject: ftir data


        This is not the most appropriate place, but I'm looking for
databases of ftir spectra (of organics) so I can check some computations.
Unfortunately, the spectra, I want don't appear to be in the Aldrich books.
Does anybody know of where I might look (especially a net source that could
be downloaded)?

Thanks

  
Ross Underhill
Royal Military College of Canada
Kingston, Ontario
(613) 541-6000 X6175


From toukie@zui.unizh.ch  Thu Oct 20 12:49:15 1994
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	id AA29272; Thu, 20 Oct 94 17:19:00 +0100
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Date: Thu, 20 Oct 1994 17:13:37 +0100 (MET)
From: "Hr Dr. S. Shapiro" <toukie@zui.unizh.ch>
Sender: toukie@zui.unizh.ch
Reply-To: toukie@zui.unizh.ch
Message-Id: <62017.toukie@zui.unizh.ch>
To: chemistry@ccl.net
Subject: Software questions


Dear Colleagues;

     I have two software questions:

 (i) Can anyone send me a list of the 20 molecular descriptors that are
calculated in the programme SciQSAR for HyperChem?  Better still, can anyone
send me a list of the 20 molecular descriptors that are calculated in the
programme SciQSAR for HyperChem together with a brief description of how each
descriptor is calculated?

(ii) Does anyone know of a programme (preferably shareware) that would enable
me to convert a chemical structure drawn using either HyperChem for Windows
Release 3 or ChemWindow to a SMILES linear structure?  Has anyone ever had
any experience with a chemical structures file conversion utility called
ConSystant?

     Thanks to all responders in advance.


Sincerely,

(Dr.) S. Shapiro
Institut fuer orale Mikrobiologie und allgemeine Immunologie
Zentrum fuer Zahn-, Mund-, und Kieferheilkunde der Universitaet Zuerich
Plattenstrasse 11
Postfach
CH-8028 Zuerich, Switzerland

Internet: toukie@zui.unizh.ch
FAX-nr: ( ... + 1) 261'56'83

From toukie@zui.unizh.ch  Thu Oct 20 12:55:49 1994
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	by www.ccl.net (8.6.9/930601.1506) id MAA08831; Thu, 20 Oct 1994 12:19:10 -0400
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	id AA29279; Thu, 20 Oct 94 17:19:08 +0100
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Date: Thu, 20 Oct 1994 17:13:45 +0100 (MET)
From: "Hr Dr. S. Shapiro" <toukie@zui.unizh.ch>
Sender: toukie@zui.unizh.ch
Reply-To: toukie@zui.unizh.ch
Message-Id: <62025.toukie@zui.unizh.ch>
To: chemistry@ccl.net
Subject: StereoEnergetics of Walden inversions


Dear Colleagues;

     Can anyone provide me with references about the energetics of Walden in-
versions and the relationship between the "ease" of inversion and the size/
steric parameters of the substitutents attached to the carbon atom at which
the inversion would occur?  Specically, we have been discussing theoretical
possibilities of performing a Walden inversion at sterically-hindered terti-
ary carbon atoms, such as position C-14 of the steroidal skeleton.  Are there
any precedents for an inversion of configuration at the steroidal C-14 posi-
tion (or similarly-hindered natural product tertiary carbon atoms) occurring
via a Walden inversion?  Of course, literature citations would be extremely
welcome.

     Finally, are there any chemical or biochemical precedents for a Walden
inversion occurring in which the departing moiety is a hydride ion or other
hydrogen species?  Again, literature references would be most helpful.

     I thank all responders in advance for generously sharing their informa-
tion with me.



Sincerely,

(Dr.) S. Shapiro
Institut fuer orale Mikrobiologie und allgemeine Immunologie
Zentrum fuer Zahn-, Mund-, und Kieferheilkunde der Universitaet Zuerich
Plattenstrasse 11
Postfach
CH-8028 Zuerich, Switzerland

Internet: toukie@zui.unizh.ch
FAX-nr: ( ... + 1) 261'56'83

From jim@wavefun.com  Thu Oct 20 13:21:37 1994
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	by www.ccl.net (8.6.9/930601.1506) id MAA09572; Thu, 20 Oct 1994 12:56:13 -0400
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From: "jim" <jim@acura.wavefun.com>
Message-Id: <9410200948.ZM7871@acura.wavefun.com>
Date: Thu, 20 Oct 1994 09:48:41 -0700
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To: CHEMISTRY@ccl.net
Subject: WAVEFUNCTION IS ON-LINE!
Content-Type: text/plain; charset=us-ascii
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			!!! WAVEFUNCTION IS NOW ON-LINE !!!

Wavefunction, Inc., producers of SPARTAN is now on-line.  Via E-Mail, you can:

1.  Acquire the latest information about SPARTAN molecular modeling software.

2.  Learn how to purchase copies of "Experiments in Computational Organic
           Chemistry" by Dr. Warren Hehre or other Wavefunction publications.

3.  Obtain scientific and technical assistance.

4.  Send Wavefunction ideas and suggestions on how we can better serve you.

If you would like to learn more about SPARTAN, the modeling package used by
commercial and academic chemists around the world, contact me, Jim Parisi, at:

				SALES@WAVEFUN.COM.

If you are a SPARTAN user and require scientific/technical assistance, contact:

				SUPPORT@WAVEFUN.COM.






From gilson@ibm2.carb.nist.gov  Thu Oct 20 14:22:38 1994
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 20 Oct 1994 14:12:55 -0400
Date: Thu, 20 Oct 1994 14:12:55 -0400
From: gilson@ibm2.carb.nist.gov (Dr. Mike Gilson)
Subject: Generating classical force field parameters for arbitrary molecules.
To: chemistry@ccl.net, gilson@ibm2.carb.nist.gov
Message-id: <9410201812.AA21129@ibm2.carb.nist.gov>
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I'd be grateful for pointers to software and/or journal references
relating to the problem of generating reasonable classical force-field
parameters (bond-stretch and angle-bend force constants, dihedral
rotation barriers, atomic charges...) for arbitrary organic molecules
of perhaps 100 atoms.  

Thanks in advance,

Mike Gilson
gilson@indigo2.carb.nist.gov




From burke@agouron.com  Thu Oct 20 17:21:42 1994
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From: "Ben Burke" <burke@agouron.com>
Message-Id: <9410201332.ZM19647@cardinal.agouron.com>
Date: Thu, 20 Oct 1994 13:32:01 -0700
In-Reply-To: gilson@ibm2.carb.nist.gov (Dr. Mike Gilson)
        "CCL:Generating classical force field parameters for arbitrary molecules." (Oct 20,  2:12pm)
References: <9410201812.AA21129@ibm2.carb.nist.gov>
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To: gilson@ibm2.carb.nist.gov (Dr. Mike Gilson), chemistry@ccl.net
Subject: Re: CCL: ANS: Gen classical FF pars
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On Oct 20,  2:12pm, Dr. Mike Gilson wrote:
> I'd be grateful for pointers to software and/or journal references
> relating to the problem of generating reasonable classical force-field
> parameters (bond-stretch and angle-bend force constants, dihedral
> rotation barriers, atomic charges...) for arbitrary organic molecules
> of perhaps 100 atoms.

===POINTER====>   "Molecular Mechanics Force-Field Parameterization
Procedures",                    AJ Hopfinger & RA Pearlstein, JCC, 5, No. 5,
486-99 (1984).
This is a set of procedures and guidelines for estimation of bond length, bond
angle and torsional potential constants for molecular mechanics force fields.
 The force field constants are ultimately derived by "subtracting" non-bonded
molecular mechanics energies from the molecular orbital energies using a model
compound containing the chemical structure to be parameterized.

===POINTER====>   "A Molecular Mechanics Valence Force Field for Sulfonamides
   Derived by ab Initio Methods", JB Nicholas et al, JPhysChem, 1991, 95,
9803-11 is a recent example of the method.  John's work is very nice, and
complete.
His model compound also reminds us that inversion about nitrogen is an
important consideration.

There are, of course, alternate techniques which involve frequency
calculations. I trust that others will be sharing expertise on this.

--Ben

-- 
burke@agouron.com        Tel: (619) 622-3018         FAX: (619) 622-3299 ----------------------------------------------------------------------------
Benjamin J. Burke        Research Scientist	     Computational Chemistry     
Agouron Pharmaceuticals	 3565 General Atomics Court  San Diego, CA     92107 
----------------------------------------------------------------------------



From C1790@SLVAXA.UMSL.EDU  Thu Oct 20 18:21:40 1994
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	by www.ccl.net (8.6.9/930601.1506) id RAA15745; Thu, 20 Oct 1994 17:49:52 -0400
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Date: Thu, 20 Oct 1994 16:34:54 -0500 (CDT)
From: BILL WELSH <C1790@SLVAXA.UMSL.EDU>
Subject: Ribbons & Renderman
To: chemistry@ccl.net
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Dear Netters,

I'm looking for contacts (vendors, etc.) for obtaining two programs:

1) Mike Carson's RIBBONS.
2) Pixar's RENDERMAN

Thanks ... Bill Welsh
Dept of Chemistry
Univ. of Missouri-St. Louis
St. Louis, MO 63121



From jwilliam@gopher.chem.wayne.edu  Thu Oct 20 21:21:42 1994
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Date: Thu, 20 Oct 1994 20:21:03 -0400 (EDT)
From: Jeff Williams <jwilliam@gopher.chem.wayne.edu>
X-Sender: jwilliam@gopher.chem.wayne.edu
To: Douglas Soares Galvao - prof <galvao@ifi.unicamp.br>
Cc: chemistry@ccl.net
Subject: Re: CCL:Spartan program
In-Reply-To: <9410201457.AA04530@ifi.unicamp.br>
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I am also interested in this program!! Please send me a response also.

On Thu, 20 Oct 1994, Douglas Soares Galvao - prof wrote:

> 
> Dear Netters
> 
> I am interested in the SPARTAN program. I would like to know the address of
> the company is selling it.
> 
> Thanks in advance for your help.
> 
> Douglas Galvao
> 
> 
> ---Administrivia: This message is automatically appended by the mail exploder:
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> http://www.ccl.net/chemistry.html |     for info send: HELP SEARCH to MAILSERV
> 

From jwilliam@gopher.chem.wayne.edu  Thu Oct 20 21:24:45 1994
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From: Jeff Williams <jwilliam@gopher.chem.wayne.edu>
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To: jim <jim@acura.wavefun.com>
Cc: CHEMISTRY@ccl.net
Subject: Re: CCL:WAVEFUNCTION IS ON-LINE!
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Please send me information regarding SPARTAN!!

On Thu, 20 Oct 1994, jim wrote:

> 			!!! WAVEFUNCTION IS NOW ON-LINE !!!
> 
> Wavefunction, Inc., producers of SPARTAN is now on-line.  Via E-Mail, you can:
> 
> 1.  Acquire the latest information about SPARTAN molecular modeling software.
> 
> 2.  Learn how to purchase copies of "Experiments in Computational Organic
>            Chemistry" by Dr. Warren Hehre or other Wavefunction publications.
> 
> 3.  Obtain scientific and technical assistance.
> 
> 4.  Send Wavefunction ideas and suggestions on how we can better serve you.
> 
> If you would like to learn more about SPARTAN, the modeling package used by
> commercial and academic chemists around the world, contact me, Jim Parisi, at:
> 
> 				SALES@WAVEFUN.COM.
> 
> If you are a SPARTAN user and require scientific/technical assistance, contact:
> 
> 				SUPPORT@WAVEFUN.COM.
> 
> 
> 
> 
> 
> 
> ---Administrivia: This message is automatically appended by the mail exploder:
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