From jkl@ccl.net  Thu Mar  2 02:08:53 1995
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	by www.ccl.net (8.6.10/930601.1506) id BAA10085; Thu, 2 Mar 1995 01:16:16 -0500
Date: Thu, 2 Mar 1995 01:16:16 -0500
From: Jan Labanowski <jkl@ccl.net>
Message-Id: <199503020616.BAA10085@www.ccl.net>
To: chemistry@ccl.net
Subject: Do you want the CCL list discontinued?
Cc: jkl@ccl.net


Dear netters,

I would like to thank all of you who responded to my cry for help.
I will thank you personally, when I close letter collection
(in about 2 or so weeks).

I am trying to get support for the CCL or otherwise it will be
terminated.  It is that simple. I need your letters of support to prove
"the broad and deep support" for the Computational Chemistry List.
Without your letters, my efforts to get support will have less weight.
The letters of support should be sent to me. You may include in your
letter whatever you think is useful, for example:
  1) how long you participate,
  2) why it is useful for your
  3) how more useful it may be if support is given for future development.
Please send them to me by non-electronic mail or FAX.

To find the details on what I propose, retrieve the file by sending a message:
   select chemistry
   cd ccl-proposal
   get message.txt
   quit
to MAILSERV@ccl.net
You can also view files via WWW:
   http://www.isc.edu/chemistry.html
or gopher:
   gopher.ccl.net 73

Frankly, I am disappointed. It is my reality check...  I include the
statistics below without comments. 

domain) -- the Internet domain for subscribed addresses

Subscribers) --  number of addresses in a given Internet domain (remember that
                 many of these addresses are local exploders for CCL and there
                 are more people reading the list than the number of addresses)
Letters) -- number of letters received from the domain (yes, I counted if
            all signatures, if a letter is signed by more than 1 person)
%        -- ratio of letters to nujber of addresses in a given domain.
            Again, if all subscribers wrote the letter, it would be greater
            than 100%, since many addresses are local exploders.

------------------------------------------------------------
  domain    Subscribers  Letters   Letters/Subscribers
                                      [%]
------------------------------------------------------------
     ar         3         0        0.00
     at        20         2       10.00
     au        53         4        7.55
     be        33         2        6.06
     br        16         1        6.25
     ca        78        11       14.10
     ch        26         0        0.00
     cl         5         0        0.00
     cn         4         0        0.00
     co         2         0        0.00
     cz         3         1       33.33
     de       140         4        2.86
     dk        14         3       21.43
     ee         4         0        0.00
     eg         2         0        0.00
     eq         1         0        0.00
     es        45         4        8.89
     fi        14         1        7.14
     fr        40         3        7.50
     gr         4         1       25.00
     hk         3         0        0.00
     hr         7         0        0.00
     hu        13         0        0.00
     ie         1         0        0.00
     il        26         1        3.85
     in        10         0        0.00
     ir         2         0        0.00
     it        33         2        6.06
     jp        29         0        0.00
     kr        11         0        0.00
     lv         1         0        0.00
     mk         1         0        0.00
     mx        12         0        0.00
     nl        42         5       11.90
     no         6         1       16.67
     nz         2         0        0.00
     pl        35         1        2.86
     pt         1         1      100.00
     ru         4         0        0.00
     se        18         1        5.56
     sg         5         0        0.00
     sk         5         0        0.00
     su         5         0        0.00
     th         2         0        0.00
     tr         3         0        0.00
     tw         9         0        0.00
     uk       123         6        4.88
     us         6         0        0.00
     ve         1         0        0.00
     za         9         1       11.11
    com       342        21        6.14
    edu       732        44        6.01
    gov        80         2        2.50
    mil        15         0        0.00
    net        11         0        0.00
    org        25         2        8.00
-----------------------------------------
Total:       2137       125        5.85

==============================
Yours as always
Jan
jkl@ccl.net
-- 

Dr. Jan K. Labanowski, Senior Research/Supercomputer Scientist/Specialist, etc.
Ohio Supercomputer Center, 1224 Kinnear Rd, Columbus, OH 43212-1163
ph:(614)-292-9279,  FAX:(614)-292-7168,  E-mail: jkl@ccl.net  JKL@OHSTPY.BITNET


From poblopex@sc.ehu.es  Thu Mar  2 04:09:07 1995
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Date: Thu, 2 Mar 1995 09:49:14 +0000 (WET)
From: Xabier Lopez <poblopex@sq.ehu.es>
Subject: Re: CCL:EEC summer school (fwd)
To: chemistry@ccl.net
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---------- Forwarded message ----------
Date: Tue, 28 Feb 1995 19:39:13 +0000 (WET)
From: Xabier Lopez <poblopex@sq.ehu.es>
To: "Jesus M. Ugalde" <popugurj@sq.ehu.es>
Subject: Re: CCL:EEC summer school (fwd)

Dear sir:

I am Xabier Lopez, a Ph.D. student adscrite to the group of Prof. 
Jesus M. Ugalde. I am finishing my thesis and I am very interested
in going to the EEC summer school. I would like to know
if that is still possible or if it is too late to send the form required.

I am looking forward to hearing from you, and thank you very much in 
advance:

Xabi

 



From rs0thp@rohmhaas.com  Thu Mar  2 09:09:47 1995
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From: rs0thp@rohmhaas.com (Dr. Tom Pierce)
Message-Id: <9503021344.AA24822@monte.br.rohmhaas.com>
Subject: Re: CCL:simplex
To: JeanLuc.Verschelde@rug.ac.be (Jean-Luc Verschelde)
Date: Thu, 2 Mar 1995 08:44:06 -0500 (EST)
Cc: chemistry@ccl.net
In-Reply-To: <Pine.SOL.3.91.950301165542.5452A-100000@allserv.rug.ac.be> from "Jean-Luc Verschelde" at Mar 1, 95 05:07:09 pm
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Previously, Jean-Luc Verschelde wrote:
> 	Where can I find minimization algorithms?
>  	The simplex procedure would be nice.

I find excellent numerical software at:
http://www.netlib.org
and
http://gams.nist.gov

The GAMS "Guide to Available Mathematical Software" can
be accessed by telnetting to gams.nist.gov
and following the instructions. 

-- 
Sincerely, Thomas Pierce - THPierce@RohmHaas.Com  -  Computational Chemist
"These opinions are those of the writer and not the Rohm and Haas Company."


From leboeuf@CERCA.UMontreal.CA  Thu Mar  2 10:09:22 1995
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Subject: Support Jan and CCL
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Dear CCLers,

I am also very disappointed in all of you. If you like
the CCL, and if you think it is useful, then you must
have time to write a letter to Jan.

Martin Leboeuf
leboeuf@cerca.umontreal.ca

From cletner@remcure.bmb.wright.edu  Thu Mar  2 13:09:29 1995
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Date: Thu, 2 Mar 1995 12:12:07 -0800 (PST)
From: Charles Letner <cletner@remcure.bmb.wright.edu>
Subject: CCL support
To: Computational Chemistry List <CHEMISTRY@ccl.net>
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Let me chime in and say, I to am disappointed.  Do people really think
that the CCL isn't usefull?  Hey if you had time to read/post to the CCL
then you have time to write a letter.  If you don't wite in support, then
you cannot complain when the CCL is shut down due to lack of support. 
Regards,
Chuck

Charles Letner
Wright State University
Department of Biochemistry
Dayton, OH 45435
e-mail: cletner@remcure.bmb.wright.edu



From oscar@bilbo.edu.uy  Thu Mar  2 14:09:17 1995
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Date: Thu, 2 Mar 1995 15:49:25 -0300 (TZ )
From: "Oscar N. Ventura" <oscar@bilbo.edu.uy>
To: chemistry@ccl.net
Subject: support CCL
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Hi netters!
 I hope one can observe in today's postings why one should support
Labanowski's efforts. The list needs more moderation, so that certain
messages (including this?) do not get distributed. You see, there is
certain verbal spanking I can easily live without.
 O.
-------------------------------------------------------------------------------
Dr. Oscar N. Ventura                 Tel.     +(5982)941860
MTC-Lab                              Fax      +(5982)941906
Gral.Flores 2124, C. C. 1157         E-mail   oscar@bilbo.edu.uy
Montevideo 11800, URUGUAY            MTC-Lab  http://bilbo.edu.uy/MTC-Lab.html
-------------------------------------------------------------------------------



From vis@gensia.com  Thu Mar  2 15:09:24 1995
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Date: Thu, 2 Mar 1995 07:14:50 +48000
To: CHEMISTRY@ccl.net
Subject: Re: Support to CCL
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Hello Jan and everybody,

We strongly support CCL. I am not sure in what context the discussion came
about (because I did not follow the e-mail for 1 month).

viswanadhan

vis@gensia.com


From SATYAM@vms.cis.pitt.edu  Thu Mar  2 16:09:21 1995
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Date: Thu, 02 Mar 1995 15:15:00 -0400 (EDT)
Subject: Polarization Propagators in Drug Design...?
To: chemistry@ccl.net
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Dear Netters,

Can somebody points us to some references/papers/reviews
books which make connection between polarizabilities and
drug-design ?

Any help will be appreciated
Thanks
Satyam


From cmao771@charon.cc.utexas.edu  Thu Mar  2 16:12:16 1995
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From: "Isaac B. Bersuker" <cmao771@charon.cc.utexas.edu>
Message-Id: <9503022106.AA64951@charon.cc.utexas.edu>
Subject: Summary of MO LCAO with FC
To: chemistry@ccl.net (Computational Chemistry List)
Date: Thu, 2 Mar 95 15:06:55 CST
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Dear 
	Frank Jensen, Stefan Fau, Ross Underhill, Gustavo Mercier, 
Mayer Istvan, Dennis L. Lichtenberger, David Heisterber, Alain St-Amant,
Shridhar Gadre, Thomas Bally, R.L.W.M. Erens, Bingze Wang, Ole Swang,
and Gennady Gutsev:
	
	First of all, many thanks for your replies to my question about
the MO LCAO method with fractional charges.  Many answers refer to the
Density Function Theory (DFT).  We knew, of course, about this possibility,
but it does not suit us.  Our electronic transparent interface between
QM and MM calculated fragments is worked out in the semiempirical MO LCAO
approach; DFT is not sufficiently good for geometry optimization, and we
have no appropriate programs for the Fenske-Hall method with geometry
optimization.  

	The suggestions of David Heisterberg is just what we are now
doing to solve the problem, but a question remains open: how to define
the multiplicity of an open shell state with frational charges.

	Below follows my original question and the replies received so
far.

--------------------------------------------------------------------------------

ORIGINAL QUESTION

Dear Netters:

        We have a non-trivial problem.  Developing a method of semiempirical
fragmentary MO LCAO calculations, we encounter the necessity to calculate the
electronic structure of molecular systems with FRACTIONAL CHARGES.  So
far, we couldn't find any existing method which can be easily adapted to
include fractional charges; to our knowledge, all the known methods are
reasonably assuming that the number of electron is integer.  Could anybody
help us with suggestions or hints?  We promise to generalize the replies for
the CCL.

--------------------------------------------------------------------------------
From: Frank Jensen <frj@dou.dk>

for the electrons or the nuclei. I have played with the latter in
        Two possible solutions: introduce fractional charges either
another connection. Modifying existing code is trivial. What the
"physical" implications are I'm not sure.
        Frank

------------------------------------------------------------------------------

From: "Stefan Fau"  <FAU@ps1515.chemie.uni-marburg.de>

Hi,
There is a paper on fractional particle numbers in DFT,
maybe it's of use:

J. P. Perdew, R. G. Parr, M. Levy in:
Phys. Rev. Lett. 49 (23), 1691 (1982)

Good luck!


Stefan Fau,               fau@ps1515.chemie.uni-marburg.de

FB Chemie der Philipps-Universitaet Marburg,
Hans-Meerwein-Str.
D-35032 Marburg

fau@ps1515.chemie.uni-marburg.de

------------------------------------------------------------------------------

From: underhil@hp.rmc.ca (Ross Underhill)

A tough problem.  The way Hyperchem deals with the fragments and the only
way that I think will work is to break the molecule at a single bond and
then parameterize the missing part of the system with a single s orbital
suitably parameterized to represent the missing system.  In this way you
deal with an integer number of electrons but come up with a fractional
charge on the fragment in a natural way because charge transferred to the
pseudo atom can be consisdered as lost (or gained) to the system.  Obviously
some care has to be taken at where you break and how you can parameterize
the pseudo orbitals.

Dr. Ross Underhill
Royal Military College of Canada
Kingston, Ontario
(613) 541-6000 X6175

------------------------------------------------------------------------------

From: Gustavo Mercier <mercie@mail.med.cornell.edu>

Hi!

Although not exactly in the spirit of semiempirical HF like methods,
DFT methods using the K-S equations allow you to specify fractional
occupation numbers. In fact, Slater's transition state method originally
described within the X-alpha approximation uses a fractional occupation.
Nothing stops you from making the sum of the fractions less than an
integer.
ADF can take fractional occupation numbers, although I don't
know if the program checks to make sure they add to a whole number. From
a computational point of view (and may be even theoretical point of view)
you should not have a problem.

Gustavo A. Mercier, Jr.
mercie@mail.med.cornell.edu

------------------------------------------------------------------------------

From: Mayer Istvan <h1376may@ella.hu>

Dear Dr. Bersuker,

I suppose, you might calculate systems with fractional charges
by introducing explitly some orbitals and assigning to them
fractional occupation numbers when building the density
matrix.

Yours,
Prof. Istvan Mayer
Budapest

------------------------------------------------------------------------------

From: DLICHTEN@XRAY0.CHEM.ARIZONA.EDU (DENNIS L. LICHTENBERGER)

Isaac,
        Fenske-Hall calculations easily do fractional charges.  You probably
know Mike Hall at Texas A&M and can contact him directly about it.
Dennis Lichtenberger

------------------------------------------------------------------------------

From: David Heisterberg <djh@ccl.net>

Can you write an energy expression in the form

    E = SUM_i {q_i h_ii + SUM_j {a_ij (ii|jj) - b_ij (ij|ij)}}

for one of these fractional systems?  The a_ij and b_ij are the
appropriate coupling coefficients with occupation numbers included.
If so, you might look into the way Cadpac does it's generalized SCF.
--
David J. Heisterberg (djh@ccl.net)      Gee, it's so beautiful, I gotta
The Ohio Supercomputer Center           give somebody a sock in the jaw.
Columbus, Ohio                          -- Little Skippy (Percy Crosby)

------------------------------------------------------------------------------

From: st-amant@theory.chem.uottawa.ca (Alain St-Amant)

Hi,

With regards to your post, you might want to consider DFT.  The occupation
numbers for the KS orbitals can be fractional.  In fact, for ionization
energies, you sometimes perform SCF calculations on a system with half an
electron removed.

I had all of this working in my old code deMon.  I have no idea if it's
still supported or not.  In my new code DeFT, I had plans to implement it
in the next few months.

Alain St-Amant

------------------------------------------------------------------------------

From: gadre@parcom.ernet.in

You may consider using DFT-bvased methods. Fractional charge poses
no formal problem there..............Shridhar Gadre..22.2.95.

------------------------------------------------------------------------------

From: Thomas.Bally@unifr.ch (Thomas Bally)

Dear Dr. Bersuker,

  quite a while ago, during my PhD thesis, I did something which sounds
  similar to what you wish to do. I was at the time (and, in fact, still
  quite a while ago, during my PhD thesis, I did something which sounds
  similar to what you wish to do. I was at the time (and, in fact, still
  am!) interested in the electronic structure and potential energy surfa-
  ces of radical ions which I calculated by MINDO/3. Often I ran into con-
  vergence problems and I developed a bag full of tricks to beat those
  (they are described in Helv. Chim. Acta 62, 583 (1979), more precisely
  on pp 585/586, I can senc you a reprint if you have no access to this
  journal). One of these tricks consisted in starting out with a closed-
  shell configuration (neutral or dication) and arrive at the desired
  radical cation by "dropwise" population (from dication) or depopulation
  (from neutral) of a given MO. For this I had to do SCF calculations
  with fractional occupation numbers (and hence fractional charges). I
  actually developed and "interactive" version of the MINDO/3 program
  where I would put a "drop" of charge into the target MO and watch the SCF
  calculations converge. If it diverged, I stopped it, went back and put
  "half a drop" of charge into the MO and so on until I found conditions
  where it converged. Taken together with the other tricks (symmetrization
  of the MO's or the F-matrix after every iteration etc.) I often managed
  to achieve convergence in "impossible" cases and arrive at a set of
  potential energy curves (cf. Fig. 2 in the above paper) which made sense,
  although the "stepping stones" used to arrive at states with integral
  charge were of course entirely unphysical.

  Unfortunately, I am afraid that I no longer have the code which I used
  for these calculations. I keep a copy of MOPAC with the MO-filter and
  the symmetrization (which are also described in the above paper), but
  the fractional occupation existed only in the "interactive" version
  which was discarded when I left the University of Basel in 1979.

  Perhaps it is important to know that the fractional occupation was
  implemented in a program which used Dewar's "half electron" method
  to calculated open-shell systems. Thus, I actually always put *pairs
  of fractional alpha and beta electrons into my target MO. Conceptually,$
  it should also be possible to do the same in a UHF way.

   Feel free to contact me if you have more questions, perhaps I remember
  some important details whic I forgot to mention here.

  Sincerely

  thomas bally


*-------------------------------------------------------------------------*


*-------------------------------------------------------------------------*
|  Prof. Thomas Bally                 |  E-mail:  Thomas.Bally@unifr.ch   |
|  Institute for Physical Chemistry   |  WWW page:                        |
|  University of Fribourg             |  http://sgich1.unifr.ch/pc.html   |
|  Perolles                           |                                   |
|  CH-1700 FRIBOURG                   |  Tel:     011-41-37 29 8705       |
|  Switzerland                        |  FAX:     011-41-37 29 9737       |
*-------------------------------------------------------------------------*

------------------------------------------------------------------------------

From: erens@chem.rug.nl (R.L.W.M. Erens)

Dear Dr. Bersuker,

In the DFT-based program DGAUSS you can enter a non-integer occupation
number of alpha and beta electrons, using the keyword OCCUP.

Best regards,
Roger Erens

Laboratorium voor Chemische Fysika
Nijenborgh 4
9747 AG  Groningen
The Netherlands

tel. +31 50 63 43 77
e-mail erens@chem.rug.nl
WWW URL http://rugch5.chem.rug.nl/~erens/

------------------------------------------------------------------------------

From: WANG@IRBM.IT

Hi Isaac,

Assuming you want an intermdiate 'tool' rather than a
physical reality, you may get these numbers by playing
the trick of ESP-fitting. Just need a little bit more math
on the top of the current approaches:

  Sum_q(i) = Q(A), atom i is from fragment A.
  Sum_Q(A) = Qt,   Qt is the total charge of the molecule.

It might be irrelevant if your question is misunderstood.

Bingze Wang

------------------------------------------------------------------------------

From: oles@kjemi.uio.no

If you don't mind using DFT, the program system ADF (Amsterdam Density
Functional) can calculate the electronic structure for molecular
systems with fractional charges.  I haven't tried it myself, but the
manual says it's possible. The program is sold at a reasonable price
(we paid about 1000$) to academic users.  Contact Bert te Velde
(tevelde@chem.vu.nl) for additional information.

Good luck,
              Ole Swang

------------------------------------------------------------------------------

From: GLG@CCIT.ARIZONA.EDU

Dear Isaak Borisovich,
   I really happy to hear from You. Some answer about fractional
charges may come from the density functional. Actually, I was
trying to fix fractional charge in my DVM-X(alpha) program in
order to calculate the core energy shifts in molecules like
SF6. The input has to contain the imlicitly defined occupation
numbers (with accounting for the MO symmetry, if exists).
In this way You may form "charges" on any internal MO, not
only the external one - with obvious tracing the orbital
when iterating for self-concistency - the easest way to
check the AO occupations. I had used it when calculating
Auger spectra in systems with several atoms of the same
type. It is easy to do if You trace the core orbitals, for higher
MOs the "adhesion" to the same MO is more complicated.
  With my personal regards,

  Gennady Gutsev
  Visiting scholar

-- 

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * 
Isaac B. Bersuker		 | E-mail: 
Welch 3.140			 | cmao771@charon.cc.utexas.edu (prefered)
Dept. of Chemistry	         | bersuker@eeyore.cm.utexas.edu
Univeristy of Texas at Austin    | Phone: (512) 471-4671
Austin, TX 78712 	         | Fax:   (512) 471-8696
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * 


From jkong@is.dal.ca  Thu Mar  2 21:09:10 1995
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Date: Thu, 2 Mar 1995 21:19:44 -0400 (AST)
From: Jing Kong <jkong@is.dal.ca>
Subject: Re: CCL:CCL support
To: Charles Letner <cletner@remcure.bmb.wright.edu>
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Dear netters,

	I have to admit that I just read the Jan's proposal today; so I 
am one of those who should be ashamed of :-(.  My impression of that 
proposal is that things like international conferences, workshops and some 
sort of organization sound too ambitious.  I thought that the 
info_highway would make communication and learning simpler and easier.

	Anyways, I think Jan's effort can't be overestimated and many of us owe 
him a lot.  It would be unreasonable and unfair to ask him or anyone else 
to continue the job of management without funding.  I do think there 
should be a change.  I guess what I would like see is that Jan gets some 
funding so that he can be freed from some of his current researching and/or 
teaching duties.  But then the money will bring in some constraints.  
Right now, we enjoy complete freedom on Internet and everything is done 
on volunteering basis.  So I don't know.

	I have to say that I don't intend to open the discussion of 
Jan's proposal, although I am sort of curious what other people think.

Regards,

Jing

