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From: "Merethe Sjovoll" <msj%fskru3@hda.hydro.com>
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Hi!
Here follows a list of all the suggestions I got. Thanks to all of you that
took the time to reply.

Merethe


From: kessi@psizi1.psi.ch (Alain Kessi)

The standard textbook is certainly Ashcroft & Mermin, "Solid State
Physics". Most of the chapters are outstanding.

Best regards,

Alain

-- Alain Kessi (alain.kessi@psi.ch), at Paul Scherrer Institut, Zuerich, CH



>From couronne@vega.ens.fr  Fri Jul 12 14:30:16 1996

Hi,

I propose you :

"Hartree-Fock Ab Initio Treatement of Crystalline Systems"
C. Pisani, R. Dovesi, C. Roetti,
Lecture Notes in Chemistry
Edited by G. Berthier et al.
Ed: Springer-Verlag 1988

Examples are with the code 'CRYSTAL'

Hope be usefull

Olivier Couronne


--------------------------------------
        AstroChimie Quantique
 Lab de RadioAstronomie Millimetrique
   Ecole Normale Superieure - PARIS
*** E-mail :  couronne@vega.ens.fr ***
--------------------------------------

>From uli@smaug.physics.mun.ca  Fri Jul 12 14:57:44 1996

 Hi Merethe,
there are three books I can recommend:

1) Kittel, Introduction to Solid State Physics, Wiley 1976
This is a nice introduction which I found most helpful

2) Ashcroft, Mermin, Solid State Physics, Holt, Rinehart and Winston, 1976
There is a newer version also. This is a bit more difficult to read.
Solid state physicists say this is T H E book.

3) R. Hoffmann, Solids and Surfaces: A Chemist's View of Bonding in
Extented Structures, VCH, 1988
 If you are inetrested in band structure calculations and find the
physics terminology less than helpful, you will love that book.

Hoffmann has also published a review article in this spirit:
4) A Chemical Approach to the Orbitals of Organic Polymers,
 Macromolecules, 1991, 24, 3725-3746

Ulrike Salzner
Department of Chemistry
Memorial University of Newfoundland
St. Johns, NF A1B 2N5
Canada

Tel.: (709) 737-2151
Email:uli@smaugs.physics.mun.ca



>From P8946019@vmsuser.acsu.unsw.EDU.AU  Mon Jul 15 01:31:38 1996

Try "the Electronic Structure and Chemistro of Solids" by Cox, or
the book by Roald Hoffman on solid-state chemistry (I forget its name).
They are both designed for the chemist.

Hguh




-- 

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From Jeffrey.Nauss@UC.Edu  Mon Jul 15 09:14:12 1996
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Date: Mon, 15 Jul 1996 09:06:50 -0400
From: Jeffrey.Nauss@UC.Edu (Jeffrey L. Nauss)
Subject: Re: CCL:Book on PERL
In-reply-to: tj ODonnell <tj@eecs.uic.edu>
 <"CCL:Book on PERL"@UCBEH.SAN.UC.EDU> (Jul 14, 5:31pm)
To: chemistry@www.ccl.net
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On Jul 14,  5:31pm, tj ODonnell wrote:

> THE reference book is the camel book, aka,
> Programming Perl, by Larry Wall and Randal L. Schwartz,
> O'Reilly and Associates, March 1992, US$29.95, CAN$42.95

Yep, I whole-heartedly agree with this one.

> Also useful is the llama book,
> I forget the exact title, by Randal L. Schwartz...

"Learning Perl" by Randal L. Schwartz, O'Reilly, Nov 1993, US$24.95, ISBN
1-56592-042-2.  An excellent book.

> You may also want a CGI/Perl book.

I recommend as a starter "Introduction to CGI/PERL" by Steven E. Brenner and
Edwin Aoki.  M&T Books, 1996, ISBN # 1-55851-478-3, US$19.95  There are others
out I am sure.

-- 
						Jeff Nauss

***********************************************************************
*  UU    UU             Jeffrey L. Nauss, PhD                         *
*  UU    UU             Director, Molecular Modeling Services         *
*  UU    UU             Department of Chemistry                       *
*  UU    UU CCCCCCC     University of Cincinnati                      *
*   UU  UU CCCCCCCC     Cincinnati, OH 45221-0172                     *
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From glowka@indigo.ch.pwr.wroc.pl  Mon Jul 15 11:14:14 1996
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From: Jacek Glowka <glowka@indigo.ch.pwr.wroc.pl>
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Hello Netters,
I have a great problem with zinc potentials in ESFF, AMBER and CVFF
forcefields. I must calculate the binding of ligands to receptor
structure of zinc-metaloenzyme.I have full structure of active site,
there are two zinc cations. I use Insight and its modules Discover and
Ludi but they have no any parameters of zinc. I have any correct ideas
for calculate potentials for zinc cations. I am biochemistry student not
computational chemist so perhaps I don't understand all tricky methods,
calculations. Please let me know. If you have any suggestions, comments,
references of my problem please contact me.
Thank you for all your help.
Sincerelly yours,
Jacek

Jacek Glowka 
Dept. of Chemistry
Tech. Uni. of Wroclaw
Poland
e-mail: glowka@indigo.ch.pwr.wroc.pl

From WILLSD@conrad.appstate.edu  Mon Jul 15 11:25:56 1996
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Date: 	Mon, 15 Jul 1996 10:33:49 -0400 (EDT)
From: willsd@conrad.appstate.edu
Subject: MOPAC for NT Summary
To: CHEMISTRY@www.ccl.net
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I posted a question about the existence of a version of MOPAC for windows 
NT several weeks ago.  This is the summary of responses to that query.

1:
From: Bruce Wilson <bewilson@eastman.com>
To: "'willsd@appstate.edu'" <willsd@appstate.edu>
Subject: FW: M:mopac for NT?
 
Greetings, neighbor.  No, I've not heard of such a port, but all
the info I have says it would be a legal one.  If you do go through
with it, I'll be happy to test it.
 
 
                                      Bruce E. Wilson
                                      Eastman Chemical Company
                                      bewilson@eastman.com

2:
From: lrbu00@xd88.kodak.com
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?
 
I believe there is an NT version of MOPAC at QCPE...
 
Regards,
 
John
 
--
 
John M. McKelvey                        email: mckelvey@Kodak.COM

(QCPE has versions that could be ported to NT but does not have an NT 
specific version in the catalog...)

3:
From: jsb2@camsoft.com
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?

We've pretty much finished doing this for MOPAC 93, and should be selling the
results in another month or two.  Because of that, you can infer any sort
of bias you feel like and salt this to taste, but I expect you will find this
a decidedly *non*-trivial task.
Additionally, there is a real question about whether the results you would
get from MOPAC 7 (or especially MOPAC 6) are worth any sort of time 
investment.
 
You might want to look at the MOPAC home page:  http://iti2.net/jstewart/
for lots more information on this subject, from the one man who knows best.
 
Jonathan Brecher
CambridgeSoft Corporation
jsb@camsoft.com
 
4:
From: seow@unixg.ubc.ca
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?
 
I have yet to find out what is the ftp site of ccl. Is there a port for
MKlinux or powerMac. Thank very much
 
 
Kah Tong, Seow
West East Centre for Microbial Diversity
University of British Columbia
Vancouver, Canada
 
(I do not know of linux or powermac versions, but the ftp site of ccl 
should be listed at the end of this message as it is appended 
automatically by J. Labanowski's wonderful program....)

5:
From: toukie@zui.unizh.ch
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?
 
Dear Prof. Dr. Williams;
 
     I can't comment upon MOPAC for Windows NT because I have no access 
to any
machines with this OS.  However, I would like to suggest that if you are 
indeed
contemplating porting MOPAC 7 (with all of the corrections later 
promulgated by
Dr. Stewart), perhaps you might also consider porting it to either DOS and/or
Windows 3.x/Windows '95 as well.  I know of some people, myself included, who
need to use this programme, especially for the ESP and COSMO modules, but who
only have access to Pentiums.  There _does_ exist a MOPAC 7 port to DOS (see
the software in the CCL archives), but it has too many, errr, "porting 
bugs" as
to render it unuseful.  I have spoken with the man who did the porting, 
actual-
ly a rather gifted graduate student, but he said that he no longer has 
the time
to go back and repair these bugs.
     Hope to hear from you again soon.
 
 
Regards,
 
S. Shapiro
Zuerich
toukie@zui.unizh.ch

(The DOS version of mopac 6 in the ccl archives does not run under NT, as 
it uses a dos memory extender that NT interprets as a security violation.
A version of mopac 6 for NT and windows 95 does exist, see below...)

6:
From: Andrey Khavryutchenko <andrey@compchem.kiev.ua>
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?

I've ported once MOPAC 6.0 to WinNT 3.5 using Microsoft Fortran Powerstation
1.0.
I have no files now, but porting is rather straighforward.  Main differences
are the different time and, to some extent, environment handling under NT
and U*x.  The thing that requires most changes is the shell script 'mopac'.
 
Regards legality of port - it's legal since it is the collaborative 
effort much
like most of GNU software.

(This is the compiler that I have and I attempted a compile of the code 
for mopac 6 (from the ccl archives) using this compiler.  There were a 
lot of problems related to this code's use of fortran unit 6 and 5 for 
scratch files, and the use of rewind statements on these files.  A port 
of this code was clearly doable, but was annoying.... See below for more)

7:
From: vicpaul@ibm.net
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?
 
 
I'm not aware of a version for NT, but there is a version for OS/2.  This
may help in your conversion.
 
----------------------------------------------------------------------------
V. Paul Gregory, Ph.D.
paul@simulate.chem.vt.edu
vicpaul@ibm.net

8:
From: "Victor M. Rosas Garcia" <rosas@irisdav.chem.vt.edu>
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?

My only suggestion is that if you want to port Mopac 7, you may want to 
divide
your project in two parts: first, getting the solvation models to work
*correctly* in Mopac 7 (the code is there, but a message always appears 
saying
that the program shouldn't be used for production runs) and, second, the 
actual
porting.  I think it would be greatly appreciated by the scientific community
if someone took the time to optimize the solvation models in Mopac 7.  AFAIK,
the code in Mopac is very clean and the porting itself shouldn't take too 
long.
 I haven't heard from anyone else porting Mopac to NT in the past.
Just a suggestion.
 
Victor
 
--
-----------------------------------------------------------------------
Victor M. Rosas Garcia                   * "How can we contrive to be
rosas@irisdav.chem.vt.edu                *  at once astonished at the
Virginia Tech doesn't necessarily share  *  world and yet at home in it?"
the opinions you just read.              *  G. K. Chesterton
-----------------------------------------------------------------------
(My motivation for this thread was to use a new NT machine was to do 
partial struture refinements and such before submitting jobs to big 
programs gaussian94, dgauss, dmol... on a cray.  Since I have yet to do 
much with solvation models, I did not follow this valuable suggestion.)

9:
From: Victor Lobanov <victor@ufark2.chem.ufl.edu>
To: willsd@conrad.appstate.edu
Subject: Re: CCL:M:mopac for NT?
 
Steve,
 
In case you haven't found MOPAC for NT yet, I have compiled MOPAC 6.0 for
Windows 95.
I believe it will run on NT without any problems. You can download it from
http://ufark12.chem.ufl.edu/victor/mopac.htm
 
Regards,
Victor Lobanov

(Victor's site has executables and code.  The executables should work for 
both NT and win95.  The code (from and SGI version of mopac 6, I think) 
does not have the scratch file / rewind problem mentioned above.  The 
code compiled under MS fortran powerstation 4 for NT, and runs just fine; 
It reproduced all of the important test results in the ccl mopac 6 
package, except for some problems related to reading density files.  
These problems may in fact be due only to how I ran the test jobs.  
Thanks Victor, this was just what I was looking for....)


So, there was some interest in mopac for NT, and such a thing does exist.

Steve Williams


From fgonzale@lauca.usach.cl  Mon Jul 15 12:14:14 1996
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From: Fdo Danilo Gonzalez Nilo <fgonzale@lauca.usach.cl>
Message-Id: <199607151540.LAA25025@lauca.usach.cl>
Subject: Atomic Force Microscopy!!???
To: chemistry@www.ccl.net
Date: Mon, 15 Jul 96 11:40:24 AST


 Hi All...
 
 	I need some information about:SCANNING PROBE MICROSCOPY especialy:
 ATOMIC FORCE MICROSCOPY AND LATERAL FORCE MICROSCOPY applied in 
 monolayers and mixed-monolayers.
 
 	In this time I am working in dominious and microdominious 
 observed in monolayers and bilayers, and liposomes.
 
 	I will agree to reciev information or references about near field 
 microscopy in this sistems.
 
 
 
 THANKS A LOT!!!!!!
 
 
 	I will summarise the comments and references...
 
 
 
 
 					ALEX\\\\
 
  -- 
 
 *************************************************************************
 Alexis Aspee Lamas.           
 Universidad de Santiago de Chile
 Facultad de Quimica y Biologia         
 Casilla 307, Santiago-2, Chile               fono: 681 2575
 E-mail : aaspee@lauca.usach.cl             fax : (562) 681 2108           
  
 *************************************************************************x

From Jeffrey.Nauss@UC.EDU  Mon Jul 15 17:14:15 1996
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Date: Mon, 15 Jul 1996 16:17:09 -0400
From: "Jeffrey L. Nauss" <Jeffrey.Nauss@UC.EDU>
Subject: Order Parameters from a Molecular Dynamics Simulation
Sender: nauss@UC.EDU
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>From under the heading of "before we reinvent the wheel:"

We want to calculate NMR order paramters for C(alpha)-H spin pairs from
a molecular dynamics simulation.  For these simulation, we will be
using Discover 2.97.  Is anyone willing to share a BCL script, FORTRAN
program, or a C/C++ program to perform the analysis and calculation?

At the moment we are considering using the methods found in the journal
articles:  Palmer and Case, JACS 114, 9059 (1992) and Friedrichs et al.
JACS 117, 10855 (1995).

Any suggestions and/or comments will be apprecitated.

-- 
						Jeff Nauss

***********************************************************************
*  UU    UU             Jeffrey L. Nauss, PhD                         *
*  UU    UU             Director, Molecular Modeling Services         *
*  UU    UU             Department of Chemistry                       *
*  UU    UU CCCCCCC     University of Cincinnati                      *
*   UU  UU CCCCCCCC     Cincinnati, OH 45221-0172                     *
*    UUUU CC                                                          *
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From welch@arris.com  Mon Jul 15 17:59:03 1996
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From: welch@arris.com (William Welch)
Message-Id: <199607152043.NAA21303@pinch.arris.com>
To: chemistry@www.ccl.net
Subject: Call for abstracts, PSB session on molecular docking



**************************Call for Abstracts*****************************

	  Molecular Docking: Lead Discovery and Optimization

		  Pacific Symposium on Biocomputing
		      (http://cgl.ucsf.edu/psb)
		  Ritz-Carlton Kapalua, Maui, Hawaii
			  January 6-9, 1997

CoChairs:   Dr. Ajay N. Jain and Dr. Will Welch
            Arris Pharmaceutical Corporation

The Pacific Symposium on Biocomputing (PSB-97) is an international,
multidisciplinary conference for the presentation and discussion of
current research in the theory and application of computational
methods in problems of biological significance.

We are currently soliciting abstracts for a poster session that will
focus on computational techniques for molecular docking applied toward
lead discovery and optimization.  The rapidly increasing availability
of structural information for biologically relevant enzymes and
receptors has put molecular docking techniques on the critical path
for modern drug discovery.

The session is intended to cover both algorithmic aspects of docking
and application of docking techniques to drug targets.  Particular
emphasis in the algorithmic area will be on methods for flexible
docking, novel scoring functions, and on methods for protein analysis
and characterization.  Emphasis in the application areas will be on
real-world use of docking techniques and assessment of their value as
lead discovery and optimization tools.  Contributions which introduce
or illustrate novel computational methods and which present
contemporary applications are equally encouraged.


INSTRUCTIONS FOR SUBMISSIONS

The Molecular Docking session will be a poster session with an
opportunity for semi-structured discussion.  We request submission of
abstracts of up to two pages adhering to the guidelines set forth on
the PSB web pages, which will be distributed at the meeting separately
>from the archival proceedings.

  Important dates
  ------------------------------------------------------------------------
  August 15, 1996   1-2 page abstract due
  August 31, 1996   Notification of accepted abstracts

Submissions to this session or questions may be sent either
electronically (preferred) or by standard mail to:

Dr. Ajay N. Jain   OR   Dr. Will Welch
Arris Pharmaceutical Corporation
385 Oyster Point Blvd., Suite 3
South San Francisco, CA 94080
jain@arris.com, welch@arris.com
Tel  (415) 829-1016 (Jain), x1014 (Welch)
Fax  (415) 829-1001

For more information on the Pacific Symposium on Biocomputing, please see
our web site at http://cgl.ucsf.edu/psb or contact: 

Ms. Sharon Surles
PSB Coordinator
Interactive Simulations, Inc.
5330 Carroll Canyon Road, Suite 203
San Diego, CA  92121
psb@intsim.com
Phone: +1 (619) 658-9782
FAX:   +1 (619) 658-9463

******************************************************************************

From Steve.Bowlus@sandoz.com  Mon Jul 15 19:14:16 1996
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X400-Originator: Steve.Bowlus@sandoz.com
X400-Recipients: CHEMISTRY@www.ccl.net
X400-Mts-Identifier: [/PRMD=SANDOZ/ADMD=400NET/C=CH/;0034700002027510000002]
X400-Content-Type: P2-1988 (22)
Message-Id: <0034700002027510000002*@MHS>
To: <CHEMISTRY@www.ccl.net>
Subject: UV-Vis Spectral Simulation
Date: Tue, 16 Jul 1996 01:06:45 +0200


An associate has asked me to find out what software may be available for
simulation or computation of UV-visible spectra, given only a structure.  He is
interested in calculating absorption maxima (transition frequencies), extinction
coefficients, and (if possible) envelope shapes.

>From Zerner's discussion of INDO/S in Volume 2 of "Reviews in Computational
Chemistry," most, if not all, of this can be calculated at the semi-empirical
level.  Has this capability been included in a reasonably easy-to-use package
which would require minimal post-processing to obtain results interpretable by
us computationally challenged types?

I will summarize useful replies if there is interest.

sb

===========================================================================
  Stephen B. Bowlus, Ph.D.                Computer-Aided Molecular Design
                                          Research Division
  e-mail: bowlus@sandoz.com               Sandoz Agro, Inc.
  Phone:  + 1 415 354 3904                975 California Ave.
  Fax:    + 1 415 857 1125                Palo Alto, CA 94304
===========================================================================

