From tobisch@mailserv.rz.fh-merseburg.de  Tue Dec 17 03:10:11 1996
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From: "Dr. Sven Tobisch" <tobisch@mailserv.rz.fh-merseburg.de>
Message-Id: <9612170722.AA20678@mailserv.rz.fh-merseburg.de>
Subject: CCL:G:making G94 on a convex_spp
To: CHEMISTRY@www.ccl.net
Date: Tue, 17 Dec 1996 08:22:36 +0100 (MEZ)
Cc: tobisch@mailserv.rz.fh-merseburg.de (Dr. Sven Tobisch)
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Dear colleagues,

i was wondering if there is someone out there who has
succesfully installed G94(Rev. B1) on an convex_spp machine.

Any hints are highly appreciated.

	Sven

From IJZERMAN@rulgca.LeidenUniv.nl  Tue Dec 17 05:10:12 1996
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From: <IJZERMAN@rulgca.LeidenUniv.nl>
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 chemistry@www.ccl.net; Tue, 17 Dec 1996 10:13:12 +0100 (MET)
Date: Tue, 17 Dec 1996 10:13:12 +0100 (MET)
Subject: expert reports
To: chemistry@www.ccl.net
Message-id: <01ID42TSQPJM0001N4@rulgca.LeidenUniv.nl>
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The Leiden/Amsterdam Center for Drug Research in conjunction
with the Leiden Center for Science and Consult announces the
publication of two expert reports.


              3D Database Searching in Drug Design

                                and

            Library Design in Combinatorial Chemistry


Both reports cover the latest developments in the field, including
literature references, information from software vendors,
'electronic' information from newsgroups and Internet home
pages, useful addresses, etc. 

For orders or further information write, fax or email to 

Dr A.P. IJzerman
LACDR, medicinal chemistry
PO Box 9502
2300RA Leiden
The Netherlands

fax 31-71-5274565

email ijzerman@rulgca.leidenuniv.nl



From mbskowro@cyf-kr.edu.pl  Tue Dec 17 06:10:15 1996
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From: Marek Skowronek <mbskowro@cyf-kr.edu.pl>
Message-Id: <199612171010.LAA21952@kinga.cyf-kr.edu.pl>
Subject: trans-cis change
To: chemistry@www.ccl.net
Date: Tue, 17 Dec 1996 11:10:32 +0100 (MET)
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Content-Type: text



Dear Netters, I

I would like to ask you for advice about following problems.  I have
performed scan calculations for a diherdral angle at the basis set
RHF/3-21G* using the Gaussian 94 program. I obtained a dependance of
energy against the dihedral angle. There are two minima for both cis and
trans form of a molecule and  energy barrier between trans and
cis. I would like to ask you how to calculate temperature of
conformational changes from trans to cis form of the molecule?

Second my question is connected with force parameters for molecular
mechanics for Amber program.  Is it possible to evaluate a force parameter
for the dihedral angle from this curve?

I should be very grateful for any comments, advice, and hints.

						     Thank you in advance
                                                     Marek Skowronek



From ercolani@utovrm.it  Tue Dec 17 10:10:14 1996
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	by www.ccl.net (8.8.3/950822.1) id JAA02407; Tue, 17 Dec 1996 09:10:05 -0500 (EST)
From: <ercolani@utovrm.it>
Date: Tue, 17 Dec 1996 15:01:09 +0200
Message-Id: <96121715010904@utovrm.it>
To: chemistry@www.ccl.net
Subject: Performance of G94W
X-VMS-To: SMTP%"chemistry@www.ccl.net"


Dear CCLers,

I'm going to buy a new PC with 64 MB RAM and a 4 GB hard disk in order
to run G94W. I would like to know what is the best combination of CPU
and operating system for this program, among the following:
Pentium 200 Mhz with Win95
Pentium 200 Mhz with Win NT 4.0
Pentium Pro 200 Mhz with Win NT 4.0

If you have any experience with G94W on these systems, plese let me know.
I' ll summarize if there is enough interest.

				Gianfranco

Prof. Gianfranco Ercolani
Dipartimento di Scienze e Tecnologie Chimiche
Universita' di Roma Tor Vergata
V. della Ricerca Scientifica
00133 Roma---Italy
E-mail: ercolani@utovrm.it

From qojskd@uscmail.usc.es  Mon Dec  9 10:52:14 1996
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Date: Mon, 9 Dec 1996 16:34:44 +0100
Message-Id: <199612091534.AA23096@uscmail.usc.es>
From: "F. Javier Sardina"  <qojskd@uscmail.usc.es>
To: chemistry@www.ccl.net
Subject: Freeware for NMR data proccesing 
Mime-Version: 1.0
Content-Type: text/plain; charset="us-ascii"
X-Mailer: POPmail 2.3b5



 Dear colleague:

  The latest version of the freeware NMR data processing program MestRe-C (1.1.2
for Windows 95) has just been released. It can be retrieved from any of the 
following anonymous ftp repositories:

   ftp://qobrue.usc.es/nmr/mestrec
   ftp.uniovi.es/pub/win95/nmr
   ftp.rediris.es/software/incoming/science/nmr/mestrec
   ftp://www.ccl.net/pub/chemistry/software/MS-WINDOWS95/MestRe-C

  This version is a minor maintenance release that fixes several bugs in the 
following routines:
  - Integration.
  - Phase correction.
  - Printing.
  - Data export as ASCII

  Users of MestRe-C 1.1.1 should upgrade to version MestRe-C 1.1.2.

  For more information check MestRe-C WWW home page:
   http://qobrue.usc.es/jsgroup/MestRe-C/MestRe-C.html

  Happy NMR data processing.

  F. Javier Sardina


F. Javier Sardina                      Phone: 34-81-591085
Departamento de Quimica Organica              34-81-563100. Ext 14234
Universidad de Santiago de Compostela  Fax:   34-81-595012 or 34-81-591091
15706 Santiago de Compostela           e-mail: qojskd@usc.es       
      SPAIN                            http://qobrue.usc.es/jsgroup/Js-eng.html
                                    



From ccl@www.ccl.net  Tue Dec 10 10:52:22 1996
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To: CHEMISTRY@ccl.net
Subject: Lattice Code for Protein folding studies
From: Arne Elofsson <arne@rune.biokemi.su.se>
Date: 10 Dec 1996 16:36:23 +0100
Message-ID: <ygbengybedk.fsf@rune.biokemi.su.se>




Dear CCL friends

I have a graduate student who is going to some studies of protein
folding with simplified lattice models of proteins. 


Does anyone have (or know about) some program with source code
that he can use for a start of his project.

sincerely yours


arne elofsson


-- 
-----------------------------------------------------------------
      From: Arne Elofsson         Email: arne@bimbo.biokemi.su.se
      Tel:+46(0)8-161553   WWW:  http://www.biokemi.su.se/~arne/


From alevy@tc.cornell.edu  Tue Dec 10 17:08:49 1996
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Date: Tue, 10 Dec 1996 15:53:17 -0400
To: alevy@tc.cornell.edu
From: alevy@tc.cornell.edu (Amy Levy)
Subject: Workshop on Parallel Solution of PDEs
Cc: tc-all@tc.cornell.edu, sn@tc.cornell.edu





                        Bring-Your-Own-Code Workshop
                      on the Parallel Solution of PDEs

                               Sponsored by:

                              Cornell Theory Center
       Institute for Computer Applications in Science & Engineering
                           Argonne National Laboratory

                              April 14-16, 1997
                     Registration deadline: March 1, 1997

                                    at
                            Cornell Theory Center
                             Cornell University
                                 Ithaca, NY

A workshop designed for computational engineers and scientists with an
interest in distributed computation for large-scale problems in partial
differential equations is announced. The workshop will introduce
participants to PETSc, the Portable, Extensible Toolkit for Scientific
Computation. It will consist of a day of presentations by PETSc developers
and users, and two days of "hands-on" coaching to port codes brought by
participants to parallel machines.

For additional information, including the registration form, link to:

   http://www.tc.cornell.edu/Edu/Workshops/PDE.97.Apr/index.html

or contact

        Amy Levy
        Conference Assistant
        Cornell Theory Center
        Telephone: (607) 254-8686
        E-mail: alevy@tc.cornell.edu




From ccl@www.ccl.net  Thu Dec 12 12:09:11 1996
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Date: Thu, 12 Dec 1996 10:44:51 CST
To: <chemistry@ccl.net>
Subject: Crystal structure of trimethoprim bound to E. coli DHFR




Dear CCLers:

              I would like to have the coordinates for the crystal structure
of trimethoprim bound to E. coli DHFR. It is not available in the PDB. Any
suggestions as to where I could find this information, would be highly
appreciated.

              The crystal structure was solved in 1985, and the reference
for it is:
Mathews,D. A.; Bolin, J. T.; Burridge, J. M.; Filman, D. J.; Volz, K. W.;
Kaufman, B. T.; Beddell, C. R>; Champness, J. N.; Stammers, D. K.; Kraut, J.;
"Refined crystal structures of Escherichia coli and chicken liver dihydrofolate
 reductase containing bound trimethoprim" J. Biol. Chem., v 260, 381-391 (1985)

              If there is sufficient interest, I will summarize the responses
for the net.

Thanking you,
Sincerely,

Chaya Duraiswami
(email: cdurai1@uic.edu)





From polowin@hyper.hyper.com  Thu Dec 12 12:12:30 1996
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Date: Thu, 12 Dec 96 11:37:26 -0500
From: polowin@hyper.hyper.com (Joel Polowin)
Message-Id: <9612121637.AA00619@hyper.hyper.com>
To: somsak@atc.atccu.chula.ac.th (Somsak Tonmunphean),
        CHEMISTRY@www.ccl.net
Subject: Re:  CCL:G:How to calculate Bond Order ?



> From: somsak@atc.atccu.chula.ac.th (Somsak Tonmunphean)
> Date: Thu, 12 Dec 1996 18:55:41 +0000 (WET)
> 
> 	I am doing my thesis with the subject of QSAR of antimalarial 
> drugs. My available chemical calculation softwares are Gaussian 92, 
> Hyperchem release 3, ChemPlus, Alchemy, and Molgen. From some papers, 
> they calculated bond orders and found that these had good correlations 
> with activity so I would like to try it but unfortunately I really don't 
> know how to calculate the bond order of molecules. Does anybody know how 
> to do so (if possible with the programs I have) ? 

It is not possible to calculate bond orders automatically with HyperChem, 
but they can be calculated manually from the density matrices, which can 
be printed in a log file.  The bond order between atoms A and B is the sum 
of the squares of the elements in the density matrix with rows for atom A's 
orbitals and columns for atom B's orbitals, or vice versa.  If you are 
doing UHF calculations, you must add the elements of the alpha and beta 
matrices together before squaring.  I tried this for C2H4 as model-built, 
with an AM1 single-point calculation, and got a C--C bond order of 2.0004.

Joel

------------
Joel Polowin, Ph.D.   Manager, Scientific Support
Email to: polowin@hyper.com 

Hypercube Inc, 419 Phillip St, Waterloo, Ont, Canada N2L 3X2 (519)725-4040
Info requests to: info@hyper.com    Support questions to: support@hyper.com
Email group: Send "subscribe hyperchem" to hyperchem-request@hyper.com
WWW: http://www.hyper.com/




From nick@cherwell.com  Fri Dec 13 12:09:24 1996
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          Fri, 13 Dec 1996 17:06:03 +0000
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Date: Fri, 13 Dec 1996 17:05:26 +0000
To: chemistry@www.ccl.net
From: Nick Lynch <nick@cherwell.com>
Subject: Re: CCL:M:Molecular Visualization on SUNs




Hi CCLers,


> However, I also need a program that will enable
>us to build and visualize small molecules. 

We are developing a Java based program for the rendering and display of
chemical structures on the web and within a Java enviroment. Running the
Java SDK would enable you to run ChemSymphony locally and also to design web
pages which allowed others to view structures within their Java compatible
browsers.

Further information is available from

http://www.cherwell.com/cherwell
Best wishes

Nick

---                                                   ---
     Nick Lynch  PhD                |  e-mail:  nick@cherwell.com
     Commissioning Editor           |  Phone:    +44 (0)1865 784812
     Cherwell Scientific Publishing |  Fax:      +44 (0)1865 784801
     Oxford OX4 4GA, UK             |  http://www.cherwell.com/cherwell
---                                                   ---



From jstewart@iti2.net  Mon Dec 16 11:47:02 1996
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Date: Mon, 16 Dec 1996 08:37:11 -0700
To: CHEMISTRY@www.ccl.net
From: jstewart@iti2.net (James J. P. Stewart)
X-Mailer: <PC Eudora Version 1.4b22>




Recently there have been several messages regarding possible
errors in MOPAC 7.  These errors were revealed at run-time.

I would like to reiterate:  MOPAC 7 is NOT intended for production
work.  It should NOT be used by users.  It is intended to be a
public-domain source of code for program developers.

There are about 300 to 400 known errors in MOPAC 7.  The errors that
users have reported are known bugs.  

Many users have asked for bug-fixes for MOPAC 7.  These requests will not
be honored.  MOPAC 7 is not supported code.  If users elect to use
a program that is known to be buggy, and which is not supported, then
user beware - a lot of time has been unecessarily wasted by using MOPAC 7.

So why not remove the bugs?

All bugs detected in MOPAC 7 have already been removed.  The corrected
program is called MOPAC 93.  

This copyrighted program is intended for users. It can be obtained 
>from the QCPE.  There is no license fee for academic users, the
license for commercial use is $2,000. 

Any bugs detected in MOPAC 93 are worked on immediately - in the past
three years, there have been 5 bugs detected and fixed, the last bug
was corrected about a year ago.

Might I make a plea - STOP USING MOPAC 7 !!!  It wastes your time and 
time is valuable - if you want to use MOPAC, then get a copy of MOPAC 93 
>from QCPE.  If you find any bugs in that, then let me know, and I'll
be happy to repond.

Jimmy Stewart   



From jstewart@iti2.net  Mon Dec 16 11:47:08 1996
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	by www.ccl.net (8.8.3/950822.1) id KAA17077; Mon, 16 Dec 1996 10:35:50 -0500 (EST)
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Date: Mon, 16 Dec 1996 08:35:11 -0700
To: CHEMISTRY@www.ccl.net
From: jstewart@iti2.net (James J. P. Stewart)
Subject: MOPAC 7 and MOPAC 93
X-Mailer: <PC Eudora Version 1.4b22>




Recently there have been several messages regarding possible
errors in MOPAC 7.  These errors were revealed at run-time.

I would like to reiterate:  MOPAC 7 is NOT intended for production
work.  It should NOT be used by users.  It is intended to be a
public-domain source of code for program developers.

There are about 300 to 400 known errors in MOPAC 7.  The errors that
users have reported are known bugs.  

Many users have asked for bug-fixes for MOPAC 7.  These requests will not
be honored.  MOPAC 7 is not supported code.  If users elect to use
a program that is known to be buggy, and which is not supported, then
user beware - a lot of time has been unecessarily wasted by using MOPAC 7.

So why not remove the bugs?

All bugs detected in MOPAC 7 have already been removed.  The corrected
program is called MOPAC 93.  

This copyrighted program is intended for users. It can be obtained 
>from the QCPE.  There is no license fee for academic users, the
license for commercial use is $2,000. 

Any bugs detected in MOPAC 93 are worked on immediately - in the past
three years, there have been 5 bugs detected and fixed, the last bug
was corrected about a year ago.

Might I make a plea - STOP USING MOPAC 7 !!!  It wastes your time and 
time is valuable - if you want to use MOPAC, then get a copy of MOPAC 93 
>from QCPE.  If you find any bugs in that, then let me know, and I'll
be happy to repond.

Jimmy Stewart   



From linaras@UMDNJ.EDU  Tue Dec 17 13:10:18 1996
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	by www.ccl.net (8.8.3/950822.1) id MAA13788; Tue, 17 Dec 1996 12:42:37 -0500 (EST)
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	(1.37.109.20/16.2) id AA290774558; Tue, 17 Dec 1996 12:42:38 -0500
From: Charilaos Linaras <linaras@UMDNJ.EDU>
Subject: Kinetic data for reaction
To: chemistry@www.ccl.net
Date: Tue, 17 Dec 1996 12:42:38 -0500 (EST)
X-Mailer: ELM [version 2.4 PL25]
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	Hi,

	I am looking for kinetic data (Arrhenius constant and
	activation energy) for the reaction :
		
		Na+ + e -> Na
		^
		|
	   (sodium ion) 
	
	Any literature references would work too.
	Thank you in advance,
	Harry E. Linaras,
	Department of Chemical Engineering,
	New Jersey Institute of Technology, Newark, N.J. U.S.A.


From qftramos@usc.es  Tue Dec 17 14:10:18 1996
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	id AA01757; Tue, 17 Dec 1996 19:41:35 +0100
Date: Tue, 17 Dec 1996 19:41:34 +0100 (MET)
From: Antonio Fernandez Ramos <qftramos@usc.es>
To: Lista computacional <CHEMISTRY@www.ccl.net>
Subject: CIS-MP2 and CAS calculations
Message-Id: <Pine.SV4.3.91.961217192915.58B-100000@uscmail.usc.es>
Mime-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII


Dear netters:

	I would like to know
 
	1)if is possible to do single points CIS-MP2 calculations with G94.

	2)if is possible restart a CAS calculation in a specific iteration.
		

Antonio Fernandez Ramos E-mail:qftramos@usc.es
Dept. de Quimica Fisica
Facultade de Quimica
Avda das Ciencias s/n
15706 Santiago de Compostela
SPAIN


From qibvigap@lg.ehu.es  Tue Dec 17 14:20:12 1996
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Date: Tue, 17 Dec 1996 20:12:35 +0000 (WET)
From: Pablo Vitoria Garcia <qibvigap@lg.ehu.es>
X-Sender: qibvigap@lgdx02
To: ccl <CHEMISTRY@www.ccl.net>
Subject: Program to superpose and fit several crystal fragments.
Message-Id: <Pine.ULT.3.91.961217200635.18419A-100000@lgdx02>
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Dear fellows,

i am looking for software (free, if that's possible) that superpose and 
fit several slightly different conformations of the same molecule in 
different crystals, in order to see the different arrangement of the 
molecules in the crystals.

Could anyone help me?

Thanks a lot

pablo
 
-----------------------------------------------------------------------------
Pablo Vitoria Garcia 
Departamento de Quimica Inorganica, Facultad de Ciencias
Universidad del Pais Vasco (UPV/EHU)
Apartado 644, E-48080 Bilbao
SPAIN
e-mail: qibvigap@lgdx02.lg.ehu.es
Phone: +34 4 4647700 Ext. 2450
--------------------------------------------------------------------------------


From rkirby@ortech.on.ca  Tue Dec 17 17:10:20 1996
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From: Robert Kirby <rkirby@ortech.on.ca>
To: "'smtp:CHEMISTRY@www.ccl.net'" <CHEMISTRY@www.ccl.net>
Subject: RE: Gamess Basis Set INput
Date: Tue, 17 Dec 1996 16:33:00 -0500
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CCL,
     Does anyone have a handy example of a GAMESS input file in which they 
placed their own basis sets. I am having some trouble getting GAMESS to take 
some of my own basis sets and wish to sort out whether it is my format or 
input template that is in error.

Thanks

Robert A. Kirby, Ph. D.
Manager,
Molecular Drug Design and Discovery,
ORTECH Corporation,
2395 Speakman Drive,
Mississauga, Ontario, Canada.
L5K 1B3
tel# 905-822-4111 ext 615
fax# 905-823-1446
e-mail rkirby@ortech.on.ca

