From kahn@prancer.biochem.missouri.edu  Mon Dec 23 18:11:35 1996
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From: "Kalju Kahn" <kahn@prancer.biochem.missouri.edu>
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Date: Mon, 23 Dec 1996 16:09:38 -0600
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To: chemistry@www.ccl.net
Subject: CD spectrum in UV/VIS region: question
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 Dear Netters,

Could anyone suggest a program or method to calculate a CD
spectrum in UV/VIS region for an organic compound (heterocyclic)
with single chiral center. I have the experimental CD spectrum and
my puropse of calculations is to assign the absolute (R or S)
configuration to this compound. I also have an educated guess
what is the structure for this compound (except stereochemistry at
chiral carbon). So I am looking for program that takes the coordinates
of the compound (and maybe a wavefunction) as input and calculates
the position of positive and negative CD bands.

  Thank you in advance for any help.
  Merry Christmas!

Kalju Kahn
Graduate Student

------------------------------------------------------------------------
Kalju Kahn			e-mail: kahn@prancer.biochem.missouri.edu
Dept. of Biochemistry		phone:  (573)882-1359
Univ. of Missouri-Columbia	fax:    (573)884-4812



From hinsen@lmspc1.ibs.fr  Mon Dec 23 18:38:02 1996
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Date: Mon, 23 Dec 1996 23:38:38 +0100
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From: Konrad Hinsen <hinsen@ibs.ibs.fr>
To: h.rzepa@ic.ac.uk
CC: chemistry@www.ccl.net
In-reply-to: <v03007801aee2a96ccd87@[155.198.63.21]> (h.rzepa@ic.ac.uk)
Subject: Re: CCL:James Stewart's article


> Now,  I sense that the chemistry sector has the opportunity to
> move into stage 3 of this evolutionary process, which could be
> summed up by the description "chemistry objects". Whilst
> object oriented chemistry programming has been seen in
> many incarnations, the most recent advent of technologies such
> as  Java and most importantly  CORBA (common object
> request brokering architectures) and its Internet implementation
> suggests that this time it should succeed.

CORBA provides the technical basis that would *allow* a useful
object-based programming approach on a large scale, but it doesn't
mean that it has to happen. Some interface standards will also be
necessary, and I don't see who would be able to define them and
influential enough to make them accepted. And then there is the problem
that at least among research scientists (who do provide a lot of
important computer code), object-oriented programming is still largely
unknown.

> SAME objects!  For example, there are about 15-20 molecule
> rendering "applets" written in Java, and yet there is no
> common object architecture between them at present.

Exactly. And then Java is unsuitable for many problems in
chemistry (as is any other single language), so we need more than
simply Java conventions.

> Which brings me to what role a "QCPE" might have in
> this new era. It might have to be a more pro-active one,
> in maintaining the chemical object namespace to go
> with CORBA (think of CORBA as an object equivalent

I must confess knowing next to nothing about QCPE (i.e. who backs it
and how it is organized), but of course it would be nice if it could fulfill
that role.

-- 
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Konrad Hinsen                          | E-Mail: hinsen@ibs.ibs.fr
Laboratoire de Dynamique Moleculaire   | Tel.: +33-4.76.88.99.28
Institut de Biologie Structurale       | Fax:  +33-4.76.88.54.94
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