From varnali@hamlin.cc.boun.edu.tr  Tue Sep 16 04:24:33 1997
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From: "Doc.Dr.Tereza Varnali" <varnali@boun.edu.tr>
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To: Steven Bachrach <smb@smb.chem.niu.edu>
Cc: computational chemistry list <CHEMISTRY@www.ccl.net>
Subject: Re: CCL:ECCC-4 Abstract Dealine
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Dear CCLlers,
I am interested to find a list of conferences for 1998.
Does anybody know an adress for it?
Thanks
Tereza Varnali

From b.howlin@surrey.ac.uk  Tue Sep 16 04:35:19 1997
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Date: Tue, 16 Sep 1997 09:00:57 +0100
From: "Dr. Brendan James Howlin" <b.howlin@surrey.ac.uk>
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Dear Netters,
		I am acting as Guest Editor for the Journal, Polymer International and
we want to produce a special issue devoted to molecular modelling of
polymers. If you would like to submit a paper to this volume and I have
not contacted you yet, then let me know.
				regards
					Brendan Howlin
		b.howlin@surrey.ac.uk

From noertema@theochem.tu-muenchen.de  Tue Sep 16 08:24:39 1997
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Date: Tue, 16 Sep 97 14:03:05 +0200
From: noertema@theochem.tu-muenchen.de (Folke Noertemann)
Message-Id: <9709161203.AA21771@theo110.theochem.tu-muenchen.de>
To: chemistry@www.ccl.net
Subject: initial hesse matrix


Dear Colleagues,
 in order to set up an initial hesse matrix for geometry optimizations
built up from a simple valence force field (see e.g. H.B.Schlegel, 
Theoret.Chim.Acta 66,333,(1984)) I have written a  short routine
that establishes valence coordinates from a given set of
cartesian coordinates. Whether there is a bond or not between
a pair of atoms is determined by a set of covalent radii
and two parameters which I have taken from a piece of code
written by T.A.Halgren ('NABOR').

Since I have no idea how old this piece of code might be, I would
like to know if there is a standard set of covalent radii somewhere
and perhaps also a standard rule which tells me if there is a bond
between two atoms or not using these covalent radii.

Thank you very much in advance,
   F.Noertemann


Folke Noertemann
Lehrstuhl f. Theoret. Chemie
TU Muenchen
Lichtenbergstr. 4
85474 Garching

From bruno@antas.agraria.uniss.it  Tue Sep 16 09:24:36 1997
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Date: Tue, 16 Sep 1997 14:52:29 +0100 (NFT)
From: "Dr. Bruno Manunza" <bruno@antas.agraria.uniss.it>
To: "Doc.Dr.Tereza Varnali" <varnali@boun.edu.tr>
Cc: Steven Bachrach <smb@smb.chem.niu.edu>,
        computational chemistry list <CHEMISTRY@www.ccl.net>
Subject: Re: CCL:ECCC-4 Abstract Dealine
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On Tue, 16 Sep 1997, Doc.Dr.Tereza Varnali wrote:

> Dear CCLlers,
> I am interested to find a list of conferences for 1998.
> Does anybody know an adress for it?
> Thanks
> Tereza Varnali
> 

Dear Tereza,
	we hold a series of links to conference lists on our site at
http://antas.agraria.uniss.it/conferences.html
	Hope it helps
regards
Bruno


Dr Bruno Manunza
DISAABA (Dept. of Agricultural Environm. Sci)
University of Sassari
V.le Italia 39
07100 Sassari, ITALY
phone: 39 79 229215
fax:   39 79 229276
e-mail: bruno@antas.agraria.uniss.it
e-mail: bruno@tharros.dipchim.uniss.it
e-mail: gx6bot81@cray.cineca.it
web: http://antas.agraria.uniss.it


From jkl@ccl.net  Tue Sep 16 10:24:35 1997
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To: varnali@boun.edu.tr
Subject: List of conferences in CCL archives
In-Reply-To: Mail from '"Doc.Dr.Tereza Varnali" <varnali@boun.edu.tr>'
      dated: Tue, 16 Sep 1997 10:47:45 +0400 (MEDT)
Cc: chemistry@www.ccl.net, jkl@ccl.net


> Dear CCLlers,
> I am interested to find a list of conferences for 1998.
> Does anybody know an adress for it?
> Thanks
> Tereza Varnali


The CCL Archives contain a list of conferences which I compile from
announcements sent to me or the CCL. 
    http://www.ccl.net/cca/info/conferencelist.html
It also has job offers:
    http://www.ccl.net/cca/jobs/joblist.html
and lots of other stuff.

Jan Labanowski
jkl@ccl.net


From destack@unomaha.edu  Tue Sep 16 14:24:38 1997
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From: "Douglas E. Stack" <destack@unomaha.edu>
To: "'CHEMISTRY@www.ccl.net'" <CHEMISTRY@www.ccl.net>
Subject: Mechanistic Organic Chemistry Books
Date: Tue, 16 Sep 1997 12:53:22 -0500
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CCLers,
Can anyone recommend a good text on mechanistic organic chemistry that =
contains the following:

1) a good review of thermodynamics, esp. as it relates to reaction =
courses.

2) A detailed description of reaction courses, how they're presented and =
perhaps mention of computational methods to obtain structures and =
energies.

3) A presentation of the major classes of reaction types (e.g. =
substitution, addition, etc.) using both traditional reaction diagrams, =
as well as, computational methods used to examine classical reaction =
mechanisms.

Any suggestion would be welcome; thanks.


Douglas E. Stack=09
Assistant Professor
Department of Chemistry
University of Nebraska at Omaha
Omaha, NE 68182-0109
(402) 554-3647
(402) 544-3888 (fax)
destack@unomaha.edu

From johnL@proteus.co.uk  Thu Sep 11 13:59:02 1997
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From: "John Liebeschuetz" <johnL@proteus.co.uk>
Message-Id: <9709111756.ZM13461@Shiloh>
Date: Thu, 11 Sep 1997 17:56:27 +0100
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To: chemistry@www.ccl.net
Subject: Electronic Parameters for substituted napthyl
Mime-Version: 1.0
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Dear CCLers,
	I sent the following message to the list on the 2nd of September. Thank
you to those people who replied with useful information. A summary follows.

>
>
> Dear CCLers,
> 	I have been developing a QSAR for a series of analogues containing a
> substituted phenyl and I find that sigma_m/sigma_p contribute robustly to the
> final model. Now I want to repeat the exercise with a related series of
> substituted napthyl analogues. Does anyone know of references or a database
> which contains lists of substituent sigma values appropriate to the various
> possible substituent points on a 1- or 2-napthyl group ? Alternatively, can
> anyone tell me how to estimate these sigma values from QM calcs. ?
> 	Thanks in advance. I will be happy to summarise for the list.
>
> 					John



______________________________________________________________________________


On Sep 4, 10:47am, yvonne.c.martin@abbott.com wrote:
> Subject: Hammett Parameters
> Try looking at the Hansch & Leo 1995 or 6 book.
>
> (1)	Hansch, C.; Leo, A.; Hoekman, D. Exploring QSAR: Hydrophobic,
Electronic,
> and Steric Constants; American Chemical Society: Washington DC, 1995, pp 348.
> (2)	Hansch, C.; Leo, A. Exploring QSAR: Fundamentals and Applications in
> Chemistry and Biology; American Chemical Society: Washington DC, 1995, pp
557.
>
> The other choice is to go to CoMFA. Even AM1 charges at the appropriate atom
> might be enough for a QSAR.
>
> (1)	Kim, K. H.; Martin, Y. C., "Direct Prediction of Linear Free Energy
> Substituent Effects from 3D Structures Using Comparative Molecular Field
> Analysis. 1. Electronic Effects of Substituted Benzoic Acids," J. Org. Chem.
> 1991, 56, 2723-2729.
> (2)	Kim, K. H.; Martin, Y. C., "Direct Prediction of Dissociation Constants
> (pKa's) of Clonidine-like Imidazolines, 2-Substituted Imidazoles, and
> 1-Methyl-2-substituted-imidazoles from 3D Structures Using a Comparative
> Molecular Field Analysis (CoMFA) Approach," J. Med. Chem. 1991, 34,
2056-2060.
>
>
> Yvonne Martin, Senior Project Leader
> Computer Assisted Molecular Design Project
> D-47E, AP10 2fl                    FON: (847)937-5362
> Abbott Laboratories                FAX: (847)937-2625
> 100 Abbott Park Road               yvonne.c.martin@abbott.com
> Abbott Park, IL 60064-3500
>-- End of excerpt from yvonne.c.martin@abbott.com


________________________________________________________________________________


On Sep 4,  1:21pm, Durst, Gregory L. wrote:
> Subject: RE: CCL: Electronic Parameters for substituted napthyl
> Hello John!
> How are you? It's been a long time since I've heard from you. I saw your
> post to CCL about naphthyl sigma constants and thought I'd respond.  I
> did a quick search and found a paper concerning naphthanesulfonyl
> chlorides and calculation of a few naphthyl sigma constants.  I don't
> know if this will help, but here it is...
>
> Perumal, S.; Selvaru, S.; Viswanathan, T. K.; Arumugam, N.  "Linear free
> energy relationship in the naphthalene system: kinetics of hydrolysis of
> 4-substituted 1-naphthalenesulfonyl chlorides",  Indian J. Chem., Sect.
> A, 25A(5), (1986), 436-438.
>
> Also if you need to calc sigmas and have a *training set including some
> naphthyls* check out:
> P. Genix, H. Jullien, R. LeGoas, J. Chemom., 10(5-6), (1996), 631-636.
>
> I have also estimated sigmas, pKas using CoMFA...Ki Kim has published on
> this...
> K. Kim and Y. Martin, J. Org. Chem., 56, (1991), 2723-2729.
>
> The key to both of the above "calc" methods is the *training set*. If
> you have no naphthyls in the training set...you're extrapolating...not
> estimating...big difference!
>
> Regards,
> Greg
> >+---------------------------------------------------------------------+
> >|   Gregory L. Durst                   Computational Chemistry        |
> >|   phone:   317/337-3413              DowElanco  R&D                 |
> >|   email:   gdurst@dowelanco.com      9330 Zionsville Rd.  306/D2    |
> >|                                      Indianapolis, IN  46268   USA  |
> >+---------------------------------------------------------------------+
> >
>-- End of excerpt from Durst, Gregory L.

___________________________________________________________________________


I also received a fax from Victoria Barclay of ACD Inc. which suggested that
the
Dewar-Grisdale method can be used to estimate sigma values for substituted
napthyl groups (Dewar M.J.S., Grisdale P.J., (1962), J.Am.Chem.Soc., 84, 3539).
The ACD program ACD/Sigma apparently uses a version of this method to calculate
sigmas for a wide range of substituted polyaromatic systems.



John


-- 
John W. Liebeschuetz Ph.D.      |    johnl@proteus.co.uk
Proteus Molecular Design Ltd.   |  
Proteus House,                  |    Tel: +44 (0)1625 500555 
Lyme Green Business Park,       |    Fax: +44 (0)1625 500666
Macclesfield SK11 0JL, UK.      |   


From ccl@www.ccl.net  Fri Sep 12 02:23:37 1997
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	Fri, 12 Sep 1997 09:13:57 +0300 (EET DST)
Date: Fri, 12 Sep 1997 09:13:52 +0300 (GFT Daylight Time)
From: Leif Laaksonen <laaksone@csc.fi>
To: Tom Cundari <tcundari@msuvx2.memphis.edu>
cc: "E. Lewars" <elewars@alchemy.chem.utoronto.ca>, chemistry@ccl.net
Subject: Re: CCL:Re: CCL:RELATIVITY IN COMP CHEM
In-Reply-To: <v01530500b03b3919fd03@[141.225.145.9]>
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Hi,

Let me remind you all of the RTAM (Relativistic Theory of Atoms
and Molecule) database at:

http://www.csc.fi/lul/rtam/

  The RTAM database contains the bibliography part of the two books
  "Relativistic Theory of Atoms and Molecules I-II" (Springer, 
  Berlin, 1986 and 1993), (LNCh 41 and 60) as well as additional 
  references, mainly later ones from 1993- onwards. 
  The contents of the references are analyzed in the books. 

Regards,

-leif laaksonen

-------------------------------------------------------------------
Center for Scientific Computing    | Phone:      358 9 4572378
P.O. Box 405                       | Mobile:     358 400425203
FIN-02101 Espoo                    | Telefax:    358 9 4572302
FINLAND                            | Mail:  Leif.Laaksonen@csc.fi
-------- URL: http://laaksonen.csc.fi/leif.laaksonen.html ---------




From ccl@www.ccl.net  Fri Sep 12 12:23:45 1997
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Date: Fri, 12 Sep 1997 08:49:42 -0700 (PDT)
From: Mark Thompson <mathomps@u.washington.edu>
Message-Id: <199709121549.IAA14796@saul3.u.washington.edu>
To: chemistry@ccl.net
Subject: Argus: input file formats.




I am looking to have Argus support other input file 
formats.  I would like to get some feeling for a
concensus on the most important formats to support.

Current considerations:

 PDB and XYZ

Any other suggestions?


Mark Thompson



From balducci@serine.phr.utexas.edu  Fri Sep 12 14:42:08 1997
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From: "Renzo Balducci" <balducci@serine.phr.utexas.edu>
Message-Id: <9709121236.ZM3106@serine.phr.utexas.edu>
Date: Fri, 12 Sep 1997 12:36:22 -0500
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On Sep 12, 11:34am, Wolf-Dietrich Ihlenfeldt wrote:
> Subject: CCL:NCI SMILES Database
> On Sep 9, 22:14, Ray Crawford wrote:
> > Subject: CCL:Re: CCL:NCI SMILES Database
> >
> > All,
> >
> > Marc C. Nicklaus & Bruno Bienfait raised an interesting point...  It is
> > difficult to do string comparisons with SMILES...  Does anyone know of any
> > utilities available that can do this quickly and painlessly?
> >
> > 	Thanks,
> > 		Ray Crawford
> > 		The P&G Co.
> >
>
> Sure. The CACTVS toolkit programs (which was used to create one of
> the datasets) can read and compare SMILES-encoded structures.
>
> Note however that this is not a string-level comparison but
> operates on the decoded structures. Therefore, it is several
> magnitudes slower than simple string matching (but probably
> still fast enough for most applications).
>
> The alternative is USMILES (Unique SMILES), a procedure
> to generate a unique SMILES string, regardless of
> the order of atoms in the structure etc. Unfortunately, as
> far as I know, the precise mechanism to generate this
> string is unpublished and proprietory to Daylight.
> If I am wrong with this, I'd be interested in a reference.

D. Weininger, A. Weininger, and J. L. Weininger
"SMILES. 2. Algorithm for Generation of Unique SMILES Notation"
J.Chem.Inf.Comput.Sci. (1989), 29, p.97-101


	---Renzo


-- 
------------------------------------------------------------------------
Renzo Balducci                          balducci@naphthyl.phr.utexas.edu
Research Associate & System Manager     balducci@vax.phr.utexas.edu
College of Pharmacy                     Voice: (512) 471-8509
Univ. of Texas --- Austin, TX 78712       FAX: (512) 471-7474
------------------------------------------------------------------------
"We are perhaps not far removed from the time when we shall be able to 
submit the bulk of chemical phenomena to calculation." Gay-Lussac (1808)

     ++++ stop the execution of Mumia Abu-Jamal ++++
 ++++ if you agree copy these 3 sentences in your own sig ++++
++++ see: http://www.xs4all.nl/~tank/spg-l/sigaction.htm ++++



From mckelvey@kodakr.kodak.com  Fri Sep 12 16:36:34 1997
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Date: Fri, 12 Sep 1997 03:51:13 +0100
From: John McKelvey <mckelvey@kodakr.kodak.com>
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Organization: Eastman Kodak Company
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This is a multi-part message in MIME format.

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CCLER's:

Sorry I left the Dallas/ACS Symposia list out of the previous listing!
If you wish to participate, and you are encouraged to do so, please
contact the respective Symposia chairs.  If there is a doubt as to where
your thoughts might fit, there are always the poster sessions on Monday
and Tuesday evenings (brew included.) Please let us know if you are
interested...


John
-- 
************************************
* John McKelvey                    *
* Imaging Research and Development *
* Building 83                      *
* Research Laboratories            *
* Eastman Kodak Company            *
* Rochester, NY 14650-2216         *
* (V)716-477-3335                  *
* (F)716-722-2327                  *
* (E)McKelvey@Kodak.COM            *
************************************

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  American Chemical Society
  Computers in Chemistry Division
  Dallas Meeting, March 29 - April 2, 1998
  
       
  Program Chair:  Dr. John McKelvey, B83 Research Labs, Eastman Kodak
  Company, Rochester, NY, 14650-2216; Voice:  (716) 477-3335; 
  Fax: (716) 722-2327; email: McKelvey@Kodak.com.
  
  If you are interested in presenting at Dallas, please contact one of the session
  chairs below.  For all concerned four (4) copies of 150-word abstract (Original
  on ACS Abstract Form) are due by October 20, 1997 to respective session or
  symposium chairperson.
  
  .     Computational Reaction Mechanisms -  Dr. Timothy Clark, Chemie-Centrum
          des Institus fur Organische Chemie, Friedrich-Alesander-Universitaet, Erlhangen-Nuernberg,            
          Naegelsbachstrasse 25, D-91052 Erlangen, GERMANY; voice: +49-9131-852948;
          fax:  +49-9131-856565; email:  clark@organik.uni-erlangen.de.
            
  .     Compuational Chemisty on Organophosphorus Compounds - Dr. William
          E. White, U.S. Army Edgewood Research, Development and Engineering Center,
          SCBRD-ASI, Aberdeen Proving Ground, MD 21010; voice:  (410) 671-3058; fax: 
          (410) 671-1912; email:  wewhite@apgea.army.mil.
            
  .     QSAR and Related Techniques - Dr. Curt Breneman, Department of
          Chemistry, Rensellaer Polytechnic University, Cogswell Lab, 110 8th St, Troy,
          NY; voice:  (518) 276-2678; fax:  (518)276-4045; email:  brenec@rpi.edu.
          
  .     Activity Prediction and Database Searching: A Synergistic Approach - 
          Dr. Ajay Shah, Biosym Corporation, 9685 Scranton Road, San Diego, CA 92121-3752; 
          fax: (619) 458-0136;  email: avs@biosym.com.
            
  .     Computational Methods in Catalysis - Dr. Donald Truhlar, Department of
          Chemistry, University of Minnesota, Minneapolis, MN 55455; voice:  (612) 624-7555;
          fax:  (612) 624-9390; email: mf12101@sc.msc.edu.
            
  .     Diverse Perspectives in Chemical Diversity - Dr. Robert Pearlman, College
          of Pharmacy, University of Texas, Austin, Texas 78712; voice: (512) 471-3383; fax: 
          (512) 471-7474; email:  pearlman@vax.phr.utexas.edu.
          
  .     Linear Scaling Quantum Mechnical Methods - Dr. Kenneth M. Merz Jr.,
          Associate Professor of Chemistry, 152 Davey Laboratory, Department of
          Chemistry, The Pennsylvania State University, University Park, Pennsylvania
          16802;  voice: (814) 865-3623;  fax:   (814) 863-8403; email: 
          merz@retina.chem.psu.edu
          
  .     General Computational Chemistry - Poster and/or Oral Sessions -       
          Dr. John McKelvey,  Research Laboratories, Building 83, Eastman Kodak               
          Company, Rochester, NY 14650-2216; voice: (716) 477-3335; fax: (716) 722-2327;
          email: McKelvey@Kodak.com.
  
  
  
  
  
  

--------------258887341A7--



From robert@pauli.utmb.edu  Mon Sep 15 11:24:24 1997
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From: "Robert Fraczkiewicz" <robert@pauli.utmb.edu>
Message-Id: <9709150952.ZM10067@pauli.utmb.edu>
Date: Mon, 15 Sep 1997 09:52:10 -0500
In-Reply-To: Juan Frau <dqujfm0@PS.UIB.ES>
        "CCL:NMR program" (Sep 15,  1:50pm)
References: <393*dqujfm0@PS.UIB.ES>
X-Mailer: Z-Mail (3.2.3 08feb96 MediaMail)
To: <CHEMISTRY@www.ccl.net>, Juan Frau <dqujfm0@PS.UIB.ES>
Subject: Re: CCL:NMR program
Cc: werner@tocsy.utmb.edu
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On Sep 15,  1:50pm, Juan Frau wrote:
> Subject: CCL:NMR program
> HI everybody
>
> Does anybody have a list of programs able to perform a conformational
> analysis using NMR data?
>
> I know some of these programs like AngleSEarch, CUPID, FANTOM,
> but I would like to know the opinion of the users as well as about
> these programs and another related to and the address where
>  we can get them?

Dear Juan,

You can get FANTOM (the best program for conformational analysis) from
the following URL:

http://www.scsb.utmb.edu/fantom/fm_home.html

FANTOM is free for academic users.

Best regards,
Robert Fraczkiewicz
University of Texas Medical Branch
Galveston, TX 77555, USA

>
> Thanks in advance
>
> Juan Frau
>
> **********************************************************************
>



From McAllister@unt.edu  Tue Sep 16 18:24:40 1997
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Date: Tue, 16 Sep 1997 17:15:32 -0500 (CDT)
From: Michael A McAllister <McAllister@unt.edu>
To: CHEMISTRY@www.ccl.net
Subject: Chromium basis functions
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Hi all, does anyone  know where I can get some high quality basis
sets for Chromium? I guess they need to be publically available,
or at least easily available.  

Appreciate it,

Mike M.

**************************************************************************
   Michael A. McAllister		
   Assistant Professor of Chemistry	voice: 940-565-4584
   University of North Texas 	 	  fax: 940-565-4318	
   P.O. Box 305070			email: McAllister@unt.edu
   Denton, TX 76203			  www: http://people.unt.edu/~mam0008	
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