From msj@fskru5.hre.hydro.com  Mon Oct 27 04:33:21 1997
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From: "Merethe Sjovoll" <msj@fskru5.hre.hydro.com>
Message-Id: <9710271019.ZM835@fskru5.hre.hydro.com>
Date: Mon, 27 Oct 1997 10:19:54 +0100
Reply-To: Merethe.Sjovoll@hre.hydro.com
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Hello everyone,

I would be very grateful if somebody having access to the ICSD database, or a
similar one, could look up the structures for the perovskites

La2NiO4
La8Ni4O17

The latter one has at least two different phases.

Best regards

Merethe

-- 

********************************************************
Merethe Sjovoll, Ph.D.                      *          *
Research Scientist                          *          *
Norsk Hydro a.s Research Center             *          * 
                                            *          *
P.O.Box 2560                                *  HYDRO   *
N-3901 Porsgrunn,                           * RESEARCH *  
Norway                                      *          *
                                            *   (((    *
email: Merethe.Sjovoll@hre.hydro.com        * (=====)  *
Phone:+47 35 56 48 97                       *          *
Fax  :+47 35 56 27 22                       *          *    
********************************************************

From jochen@pc1.uni-duesseldorf.de  Mon Oct 27 05:24:07 1997
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Date: Mon, 27 Oct 1997 10:14:42 +0100
From: Jochen Kuepper <jochen@pc1.uni-duesseldorf.de>
Message-Id: <9710270914.AA20464@bacchus.pc1.uni-duesseldorf.de>
To: CHEMISTRY@www.ccl.net, chburger@aci.unizh.ch
Subject: Re: CCL:G:Model Builders for LINUX
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:> some time ago an inquiry about molecular model builders
:> for LINUX was posted to this list. Unfortunately,
:> I have not seen any replies to this question besides
:> the suggestion to use Molden, which is
:> however, mostly a tool to analyze G94 and
:> Gamess data and _not_ a model builder (correct
:> me if I am wrong here).

Yes, but not exactly.
Molden does have an zmat editor, which let's you build up structures
interactively - it's not exactly like Spartan, but still you might
wanna look at it.

Be sureto grb the latest version (3.2 - IIRC).

Jochen

-----------------------------------------------------------------------
  Jochen K=FCpper

  Heinrich-Heine-Universit=E4t D=FCsseldorf     =
jochen@uni-duesseldorf.de
  Institut f=FCr Physikalische Chemie I
  Universit=E4tsstrasse 1, Geb 26.43.02.19       phone ++49-211-8113681
  40225 D=FCsseldorf                             fax   ++49-211-8115195
  Germany             http://www-public.rz.uni-duesseldorf.de/~jochen
-----------------------------------------------------------------------

From chan@uni-muenster.de  Mon Oct 27 05:33:21 1997
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Date: Mon, 27 Oct 1997 10:39:48 +0100 (MEZ)
From: "Jerry C.C. Chan" <chan@uni-muenster.de>
To: chemistry@www.ccl.net
Subject: basis set flexibility
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Dear CCLers,

	I have two basis sets for Silicon shielding calculation: 
1. TZVP, dft optimized, 73111/6111/1
2. iglo_II, scf optimized, 5111111/211111/11 

Could anyone please tell me whether I can use the iglo_II basis set for
a dft calculation and get a meaningful info for the basis set convergence 
(It SEEMS that the iglo_II is more flexible than the TZVP)?  Or I should
stick with either dft or scf optimized basis sets but not both of them
for each study?

Cheers,
Jerry

******************************************************************
* Jerry Chun Chung CHAN              chan@moorea.uni-muenster.de *
*								 *
* Universitaet Muenster	                phone: 0049-251-83-29156 *
* Institut fuer Physikalische Chemie    fax:   0049-251-83-29159 *
* Schlossplatz 4-7						 *
* D-48149 Muenster						 *
* Germany							 *
******************************************************************



From jochen@pc1.uni-duesseldorf.de  Mon Oct 27 05:43:07 1997
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Date: Mon, 27 Oct 1997 10:32:47 +0100
From: Jochen Kuepper <jochen@pc1.uni-duesseldorf.de>
Message-Id: <9710270932.AA20391@bacchus.pc1.uni-duesseldorf.de>
To: chemistry@www.ccl.net, mathieu@ripault.cea.fr
Subject: Re: CCL:langage
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:> For me I have to choose a programming langage. Indeed, facing a =
serious
:> need for a broad range of specific programs for molecular engineering =
of
:> energetic materials (implementing simple and efficient empirical =
models
:> based on molecular mechanics, groups increments, QSPR =
relationships...)=20
:> we have these programs written by students who remain in the team for
:> short training periods (few months).=20
:> In this context of fairly long-term projects with high turnover and =
poor
:> communication between succesive programmers, pieces of code written =
by
:> some people must be used easily by others, hence codes must be at =
least
:> modular. Experience with Fortran has shown us that training students,
:> because of the limited time allocated, are in a hurry to implement as
:> much as possible, and resulting code is not well structured. On the
:> other hand, since they are mostly students in physics or chemistry, =
most
:> of them do not master C or C++ , although all of them have some
:> programming experience, for instance with Pascal or Basic.
:>=20
:> According to me, none of those free langages, C, C++ and Fortran, is =
a
:> good choice and I am looking for a SIMPLE langage supporting =
REUSABILITY
:> and QUICK DEVELOPMENT.=20
:>=20

I would say C++ is not that hard to learn, if you are using it for=20
impererative programming.

But you might as well want to take a look at phyton or Tcl/Tk.

Jochen

-----------------------------------------------------------------------
  Jochen K=FCpper

  Heinrich-Heine-Universit=E4t D=FCsseldorf     =
jochen@uni-duesseldorf.de
  Institut f=FCr Physikalische Chemie I
  Universit=E4tsstrasse 1, Geb 26.43.02.19       phone ++49-211-8113681
  40225 D=FCsseldorf                             fax   ++49-211-8115195
  Germany             http://www-public.rz.uni-duesseldorf.de/~jochen
-----------------------------------------------------------------------

From dino@eik.bme.hu  Mon Oct 27 06:33:20 1997
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From: SZIEBERTH Denes <dino@eik.bme.hu>
Message-Id: <199710270955.KAA25542@goliat.eik.bme.hu>
Subject: symmetry recognizing algorithm
To: chemistry@www.ccl.net
Date: Mon, 27 Oct 1997 10:55:12 +0100 (MET)
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       Dear netters,

 Could someone explain how the symmetry recognizing algorithm of gaussian 
or any other qc software works? Which is the fastest and simplest way 
to make a software recognize symmetry elements (axes, planes, improper axes,
etc)
           Denes Szieberth
        e-mail : dino@goliat.eik.bme.hu



From fk2fds@dix.fkem2.lth.se  Mon Oct 27 07:33:23 1997
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From: Fernando Luis Barroso da Silva <fk2fds@dix.fkem2.lth.se>
To: CHEMISTRY@www.ccl.net
Cc: Chris Harwell <charwel@chrs1.chem.lsu.edu>
Subject: Re: CCL:Software from "Compute Simulations in Liquids"     
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  Dear Chris,

  You can find Allen and Tildesley's programs at CCP5 home-page
  (http://gserv1.dl.ac.uk/CCP/CCP5/main.html). They also have
  other softwares available and useful information.

  All the best,

      Fer.


--

Fernando Luis Barroso da Silva
Physical Chemistry II - Chemical Center
POB 124 - Lund University                  Fax: +46 (46) 2224543
S-221 00 Lund, Sweden                    Phone: +46 (46) 2228241 (lab)
E-mail: fk2fds@dix.fkem2.lth.se                 +46 (46) 2220381 (office)

         http://www.fkem2.lth.se/personnel/fernando/dasilva.html
         http://idefix.ffclrp.usp.br/barroso/fernando.html


From fgonzale@lauca.usach.cl  Mon Oct 27 08:33:23 1997
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Message-ID: <34549019.6C9BD258@lauca.usach.cl>
Date: Mon, 27 Oct 1997 08:59:05 -0400
From: Danilo Gonzalez <fgonzale@lauca.usach.cl>
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Hi, folks!

I wonder if you could help me with a question, related to DFT vs. HF
calculations.
Since DFT methods take into account, at least partially, correlation
energies in molecules, a simple calculation of the HOMO-LUMO gap by a
DFT method could be a good alternative to an HF/CI calculation, for the
theoretical prediction of electronic transitions.  For example, am I
right in expecting that the HOMO-LUMO gap of benzene, calculated by
6-311G/B3LYP, would give me as good a  transition energy as, say a
6-311G plus Configuration Interaction calculations (CIS) ?
I will summarize and forward all answers.
Thanks a lot!!,

Danilo///


--
*************************************************************************

Fernando Danilo Gonzalez N.
University of Santiago de Chile
Faculty of Chemistry and Biology, Computational Chemistry Lab.
Casilla 40, Correo 33, Santiago, Chile    Fono: (562) 681 2575 Anexo:799

E-mail : fgonzale@lauca.usach.cl            Fax   : (562) 681 2108
URL    : http://quimbio.usach.cl/~danilo/
**************************************************************************




From nauss@beryllium.crs.uc.edu  Mon Oct 27 10:33:23 1997
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From: nauss@beryllium.crs.uc.edu (Jeffrey L. Nauss)
Message-Id: <9710271025.ZM14282@beryllium.crs.uc.edu>
Date: Mon, 27 Oct 1997 10:25:03 -0500
In-Reply-To: Chris Harwell <charwel@chrs1.chem.lsu.edu>
        "CCL:Software from "Compute Simulations in Liquids"" (Oct 25, 12:32pm)
References: <Pine.A32.3.91.971025122559.31284D-100000@chrs1.chem.lsu.edu>
Organization: Dept. Chemistry, University of Cincinnati
Reply-to: Jeffrey.Nauss@UC.Edu
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To: chemistry@www.ccl.net
Subject: Re: CCL:Software from "Compute Simulations in Liquids"
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On Oct 25, 12:32pm, Chris Harwell wrote:

> 	Does anyone know where the software samples/programs referred to in
> the apendix of Allen and Tildesey's book "Computer Simulations in Liquids"
> might be found?

I know a couple of answers have already been given point to a site in the UK.
 However, you could also retrieve the files from our anonymous ftp site at
ucmodl.che.uc.edu.  The file (named a-l.tar.Z) is a compressed tar file in the
pub directory.


-- 
  Jeffrey L. Nauss, PhD           Telephone: 513-556-0148          
  Dir. Molec. Model. Serv.        Fax:       513-556-9239
  Department of Chemistry         e-mail: Jeffrey.Nauss@UC.Edu    
  University of Cincinnati        URL http://www.che.uc.edu/~nauss  

From debnath@iris.nybc.org  Mon Oct 27 10:38:55 1997
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From: "Asim Kumar Debnath" <debnath@iris.nybc.org>
Message-Id: <9710270947.ZM11654@iris.nybc.org>
Date: Mon, 27 Oct 1997 09:47:01 -0500
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Hi! Everybody:
	I would like to animate some proteins (peptides) as part of a
presentation to show the 3D structure in real time. Does anyone know of any
freeware for PC to do that? I would also appreciate if someone could tell me
 the steps involved to do the whole process ( do I need any accessory
programs?).
	Thank you very much in advance.

Asim



-- 



=======================================================================

             ***
             ***		Asim K. Debnath, Ph.D.
            ****		Assistant Member	
           **** 		Lindsley F. Kimball Research Institute 
          ****  ***		The New York Blood Center
         ****    ****		310 E 67 Th Street
        ****  **  ****		New York, NY 10021
       ****  ****  ****		Tel. (212) 570-3373
      ****    **    ****	Fax. (212) 570-3299
       ****************		E-mail: adebnath@server.nybc.org
        **************					
					
========================================================================					
					
					
											


From jkl@ccl.net  Mon Oct 27 11:33:26 1997
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From: Jan Labanowski <jkl@ccl.net>
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	by krakow.ccl.net (8.8.3/920428.1525) id KAA04022; Mon, 27 Oct 1997 10:48:58 -0500 (EST)
Date: Mon, 27 Oct 1997 10:48:58 -0500 (EST)
Message-Id: <199710271548.KAA04022@krakow.ccl.net>
To: chemistry@www.ccl.net
Subject: How about CCL version of Computer Simulations in Liquids
In-Reply-To: Mail from 'nauss@beryllium.crs.uc.edu (Jeffrey L. Nauss)'
      dated: Mon, 27 Oct 1997 10:25:03 -0500
Cc: jkl@ccl.net


> > 	Does anyone know where the software samples/programs referred to in
> > the apendix of Allen and Tildesey's book "Computer Simulations in Liquids"
> > might be found?
> 
> I know a couple of answers have already been given point to a site in the UK.
>  However, you could also retrieve the files from our anonymous ftp site at
> ucmodl.che.uc.edu.  The file (named a-l.tar.Z) is a compressed tar file in the
> pub directory.

And by the way, if you searched CCL archives:
  http://www.ccl.net/chemistry.html
for Allen or Tildesley you would find out that this software is availale
in CCL since 1993 in:
  ftp://www.ccl.net/pub/chemistry/software/SOURCES/FORTRAN/allen-tildesley-book

Amen...

Jan Labanowski
jkl@ccl.net


From seabra@NPD.UFPE.BR  Mon Oct 27 12:33:26 1997
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 27 Oct 1997 14:08:42 GMT-3
Content-return: allowed
Date: Tue, 28 Oct 1997 02:19:52 -0300
From: Gustavo de Miranda Seabra <seabra@NPD.UFPE.BR>
Subject: Help on GAMESS (other)
To: Computational Chemistry Letters <chemistry@www.ccl.net>
Message-id: <345575F7.D13EB0C5@npd.ufpe.br>
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Dear All,

    I'm trying to run a simple single point SBK/MP2 calculation on Zr +4

ion. Buti when I try to do this, GAMESS gives me an error message:

                    *ERR* KO-04 integer divide by zero

I'm including the input file I'm using, and would be very pleased if
someone
could help me! Thanks in advance.

GAMESS input file:

!
! Calculo da Energia de UM Atomo de Zr
!

 $CONTRL SCFTYP=RHF MPLEVL=2 RUNTYP=ENERGY ECP=SBK $END
 $CONTRL ICHARG=4 $END
-- $CONTRL EXETYP=CHECK $END
 $DATA
 -- Energia do Zr
 C1
Zircon 40 0.0 0.0 0.0
 SBK

 $END


--

-----------------------------------------------------------------------------------

                            Gustavo de Miranda Seabra
MSc Student in Chemistry                     E-Mail: seabra@npd.ufpe.br
Universidade Federal de Pernambuco - Recife - Pernambuco - Brazil
-----------------------------------------------------------------------------------




From smillefiori@dipchi.unict.it  Mon Oct 27 13:33:25 1997
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To: chemistry@www.ccl.net
From: "Millefiori Salvatore" <smillefiori@dipchi.unict.it>
Subject: Units in G94
Date: Mon, 27 Oct 1997 18:55:25 +0000
Message-ID: <19971027185525631.AAA177@millefiori.dipchi.unict.it>


Dear CCLers !

I will appreciate very much to know, 

   the units of dipole moment and dipole polarizability derivatives
   against vibrational modes in GAUSSIAN94 using IOP(7/33=1).
 
Enclosed find a piece of an ab initio vibrational frequency output:

 ......
  Dipole derivatives wrt mode 28: -2.46088D-14  3.13614D-06  2.65397D+01
 Polarizability derivatives wrt mode 28:
             1             2             3
   1  0.745218D-01
   2  0.000000D+00  0.209450D+00
   3  0.000000D+00  0.000000D+00  0.659501D+01
 AK= 2.29D+00 GK= 6.45D+00 Act= 5.28D+02 Depol= 3.10D-01
 Dipole derivatives wrt mode 29: -9.85718D-15 -5.61630D-07  7.04832D+00
 ......

Thank You in advance

                               
                                Dr. Andrea Alparone
                               
                              


From merkle@parc.xerox.com  Mon Oct 27 14:33:26 1997
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From: Ralph Merkle <merkle@parc.xerox.com>
To: chemistry@www.ccl.net
Subject: Molecular Nanotechnology Conference Nov. 5-8
Message-Id: <97Oct27.105923pst."12179"@manarken.parc.xerox.com>
Date: Mon, 27 Oct 1997 10:59:23 PST


Fifth Foresight Conference on Molecular Nanotechnology
November 5-8 1997, Palo Alto, California.
    http://www.foresight.org/Conferences/MNT05/Nano5.html

Abstracts and Preliminary Schedule available on the web:
    http://www.foresight.org/Conferences/MNT05/Abstracts
    http://www.foresight.org/Conferences/MNT05/Schedule.html

Keynote: Richard Smalley, Rice University
         1996 Nobel Prize in Chemistry

The 1997 Feynman Prizes in Nanotechnology will be awarded at the conference.

This conference is a meeting of scientists and technologists working in
fields leading toward molecular nanotechnology: thorough three-dimensional
structural control of materials and devices at the molecular level.  The
conference will cover topics relevant to the pursuit of molecular control:

* supramolecular chemistry and self-assembly
* proximal probes (e.g. STM, AFM)
* biochemistry and protein engineering
* computational chemistry and molecular modeling
* computer science (e.g. computational models, system design issues)
* natural molecular machines
* materials science
* mechanical engineering (CAD) and robotics

Foresight Institute, PO Box 61058, Palo Alto, CA, 94036 USA

email: inform@foresight.org, fax +1 650 917 1123, phone 650-917-1122

From jkl@ccl.net  Mon Oct 27 16:33:34 1997
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From: Jan Labanowski <jkl@ccl.net>
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Message-Id: <199710272050.PAA04094@krakow.ccl.net>
To: chemistry@www.ccl.net, chemweb@ic.ac.uk, CHMINF-L@iubvm.ucs.indiana.edu
Subject: Internet for the Practicing Chemist -- materials available on 
	the Web
Cc: jkl@ccl.net


Dear Netters,

I would like to point you to the collection of pages and materials from
the ACS Symposium: "Internet for the Practicing Chemist" which happened
in Las Vegas this fall. Topics discussed: CyberLaw, Web publishing in
chemistry, research uses of Internet, tools for presenting information
on the Web, educational uses of Web, sources of chemistry information
on the Web, etc. The speakers did an excellent job. Most of the materials
shown at this symposium are now publicly available. I hope that some missing
pieces will also be released soon by the authors, so please revisit.

Point your browser at:
             http://www.ccl.net/ccl/acs-fall97/
and enjoy.

Jan Labanowski
jkl@ccl.net
http://www.ccl.net/chemistry.html


From MAILER-DAEMON@www.ccl.net  Sun Oct 26 02:33:09 1997
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From: dxl@IRIS3.shmm.ac.cn (Dongxiang Liu)
Message-Id: <9710262150.AA01299@IRIS3>
To: chemistry@www.ccl.net
Subject: CoMFA help



Dear Sir, 

I want to obtain the CoMFA matrix from SYBYL MSS. Could someone tell me how to 
do this work? I know that the CoMFA matrix is included in .qad file when doing
Factor Analysis with Batch option. However, the .qab file is in binary format. 
So, if someone could provide the format of .qab file, it is also very helpful. 
(Please forward your answer to my E_mail box.)

Thanks, 

DongXiang Liu


==============================================================================                        
 Dong-Xiang Liu, Ph.D.
 State Key Laboratory of Drug Research       E-mail: dxl@iris3.shmm.ac.cn    
 Shanghai Institute of Materia Medica        Tel: 86-21-64311833*222  
 Chinese Academy of Sciences                      86-21-64311833*615
 294 Taiyuan Road                            Fax: 86-21-64370269
 Shanghai, 200031
 P.R. China
===============================================================================



From nakiya@engin.umich.edu  Mon Oct 27 18:33:26 1997
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Date: Mon, 27 Oct 1997 18:18:53 -0500 (EST)
From: Naoko Akiya <nakiya@engin.umich.edu>
To: chemistry@www.ccl.net
Subject: CCL: tunneling
In-Reply-To: <19971027185525631.AAA177@millefiori.dipchi.unict.it>
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Dear All,

Could someone give me any references for Eckardt calculation of tunneling?
I haven't had much luck with the on-line search.  Thank you very much in
advance.

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
  Naoko Akiya                        nakiya@engin.umich.edu
  University of Michigan                
  Dept. of Chemical Engineering      phone (313) 764-7121        
  Ann Arbor, MI 48109-2136	     fax   (313) 763-0459
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=


From mbriseno@foreigner.class.udg.mx  Mon Oct 27 22:33:29 1997
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Hello friends...


        Does anyone Know where i can search search the Bibliography :


Baker, c.k and G. H. Waller "Application of Dynamic Modeling Technique
to the Analysis and prediction of Heat Transfer with Particular
REference to Agitated Vessels," Heat Transfer Engineering. Vol 2,
Oct-Dec (1979) pag 28.


        
Uhl V. W " Heat transfer to viscous Materials in Jacketed Agitated
Kettles ", Chem Eng. Prog. Sym., series 51, No 17 pg 93 (1955) Amer.
Inst Chem Engrs., New York.


If someone know where can i get this  information, tell me ..

Thanks for your Help.

